Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0000871

Physical Location & Seq

Genomic Coordinates Forward (+)

12929084 .. 12931706

Gene Structure 2623 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g15880.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGAAGAACGATGAGCGAGCTCGGTTCCTTTTTGGGATTTCGCTCTCTGACAGACCCAAATGGCAACAATTCCTCCTTTGCTCTTCTGGGTTCTTCTTTGGCTACCTTGTTAATGGTGTCTGCGAGGAATATGTGTATAACAGGCTACAATTCAGCTATGGTTGGTACTTCACATTTGTCCAAGGATTTGTGTATCTATTTCTGATATACCTGCAAGGCTTCACCACCAAGCAAATGGTGAATCCATGGAAGACTTATGTGAAGCTTTCTGCTGTGCTTATGGGGTCCCATGGACTTACCAAAGGCTCTTTGGCTTTTCTCAACTATCCGGCACAGCTCATGTTCAAATCGACAAAGGTTCTGCCTGTGATGGTAATGGGAGCCTTCATACCAGGTTTGAGACGAAAATACCCACCTCACGAATACGTTTCTGCACTTCTTTTGGTGGTGGGTTTGATCCTATTCACCCTAGCAGATGCACAAACATCTCCCAACTTCAGCGTGATTGGTGTTCTGATGGTATCGGGTGCTTTAATCATGGATTCCTTTTTGGGTAACTTGCAAGAAGCTATCTTTACCATGAATCCCGAAACCACACAGATGGAGATGCTGTTTTGCTCTACAGTGGTTGGCCTACCTTTCTTGATTCCACCAATGCTTTTGACAGGGGAATTATTCAAAGCATGGAACTCATGTTGGCAGCATCCATACGTGTATGGCGTGTTAGTCTTCGAAGCCATGGCCACATTTGTCGGCCAAGTGTCCGTCCTTTCCCTCATTGCACTTTTCGGAGCCGCCACCACAGCCATGATCACAACGGCCAGAAAGGCCGTCACATTACTGCTGTCATACATGATATTCACAAAGCCATTAACTGAAGAGCACGGGACCGGACTTCTGCTCATAGGTATGGGGATCACACTGAAACTCCTGCCGGAAAATAAACCATACCAGAGAGTTTCAACCCCGTCTTCCAAGACCAACACTTCAAAACCTGCTCCAATCGAAAACGATAGAATCCGACTAGAAAACGCCGGAGAAAATGAAGAAAAGAGTCAATTGGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0006810 GO:0006811 GO:0006820 GO:0006862 GO:0008150 GO:0008509 GO:0008514 GO:0012505 GO:0015075 GO:0015215 GO:0015216 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015868 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0022857 GO:0030173 GO:0030176 GO:0031090 GO:0031224 GO:0031227 GO:0031228 GO:0031300 GO:0031301 GO:0031984 GO:0034220 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046963 GO:0046964 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0071702 GO:0071705 GO:0072348 GO:0072530 GO:0098588 GO:0098656 GO:0098791 GO:0098827 GO:1901264 GO:1901505 GO:1901679 GO:1901682 GO:1902559

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UAA

Protein Analysis

356

Amino Acids

39.74

Weight (kDa)

8.88

Isoelectric Point (pI)

26.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000871)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12600 AT4G23010 AT4G23010 AT4G23010
fragaria_vesca	FvH4_5g01421 FvH4_5g01421 FvH4_7g12950 FvH4_7g12950 FvH4_7g12950
malus_domestica	MD02G1194900.v1.1 MD04G1068500.v1.1 MD07G1125700.v1.1
prunus_persica	Prupe.2G153800_v2.0.a1 Prupe.5G089700_v2.0.a1 Prupe.5G089700_v2.0.a1
pyrus_communis	pycom02g15880 pycom04g06180 pycom07g11930
rosa_chinensis	RchiOBHm_Chr0c16g0499921 RchiOBHm_Chr1g0347281 RchiOBHm_Chr1g0352081 RchiOBHm_Chr3g0455881 RchiOBHm_Chr4g0437881 RchiOBHm_Chr7g0199431
rosa_laevigata	RLG00000002748 RLG00000003793 RLG00000006404 RLG00000028361
rosa_multiflora	Rmu_sc0002453.1_g000013 Rmu_sc0002464.1_g000008 Rmu_sc0003781.1_g000011 Rmu_sc0008907.1_g000006 Rmu_sc0010560.1_g000004
rosa_roxburghii	Rroxscaffold_3G00256730 Rroxscaffold_4G00303280 Rroxscaffold_5G00361360
rosa_rugosa	Rorug01G0080000 Rorug01G0223900 Rorug01G0224000 Rorug01G0224100 Rorug02G0308800 Rorug02G0308900 Rorug02G0309000 Rorug02G0515400 Rorug04G0305100 Rorug06G0238700 Rorug06G0238800 Rorug06G0238900 Rorug06G0239000 Rorug07G0053800 Rorug07G0053900.1 Rorug07G0054000
rosa_samantha	Rh1CG222900 Rh4BG367900 Rh4CG154300 Rh4CG381900 Rh4DG362500 Rh6BG359000 Rh6DG293200 Rh7AG179000 Rh7CG187600 Rh7DG181900
rosa_wichuraiana	Rw0G011570 Rw1G020720 Rw5G045820 Rw7G015720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	219, 1003
AciI	CCGC	1 cut(s)	795
AclWI	GGATC	2 cut(s)	451, 923
AcoI	YGGCCR	3 cut(s)	741, 754, 819
AcuI	CTGAAG	2 cut(s)	481, 897
AfaI	GTAC	1 cut(s)	167
AflIII	ACRYGT	1 cut(s)	711
AgsI	TTSAA	4 cut(s)	346, 679, 963, 990
AjnI	CCWGG	1 cut(s)	391
AluBI	AGCT	5 cut(s)	20, 156, 265, 337, 569
AluI	AGCT	5 cut(s)	20, 156, 265, 337, 569
Alw21I	GWGCWC	2 cut(s)	22, 885
Alw26I	GTCTC	1 cut(s)	394
AlwI	GGATC	2 cut(s)	451, 923
AoxI	GGCC	5 cut(s)	631, 741, 754, 819, 828
ApeKI	GCWGC	1 cut(s)	700
AspS9I	GGNCC	2 cut(s)	285, 888
AsuHPI	GGTGA	3 cut(s)	214, 250, 457
AsuII	TTCGAA	1 cut(s)	732
AvaII	GGWCC	2 cut(s)	285, 888
BalI	TGGCCA	1 cut(s)	743
BanII	GRGCYC	1 cut(s)	22
BbsI	GAAGAC	3 cut(s)	257, 721, 963
Bbv12I	GWGCWC	2 cut(s)	22, 885
BbvI	GCAGC	1 cut(s)	712
BccI	CCATC	3 cut(s)	364, 511, 595
BceAI	ACGGC	2 cut(s)	815, 834
BciT130I	CCWGG	1 cut(s)	393
BclI	TGATCA	1 cut(s)	810
BcoDI	GTCTC	1 cut(s)	394
BfaI	CTAG	2 cut(s)	470, 1025
BfmI	CTRYAG	1 cut(s)	621
BfuAI	ACCTGC	2 cut(s)	219, 1003
BglI	GCCNNNNNGGC	1 cut(s)	827
BisI	GCNGC	2 cut(s)	701, 795
BlsI	GCNGC	2 cut(s)	702, 796
Bme1390I	CCNGG	1 cut(s)	393
Bme18I	GGWCC	2 cut(s)	285, 888
BmgT120I	GGNCC	2 cut(s)	285, 888
BmiI	GGNNCC	6 cut(s)	26, 286, 287, 382, 793, 889
BmrFI	CCNGG	1 cut(s)	393
BmsI	GCATC	3 cut(s)	466, 597, 712
BpiI	GAAGAC	3 cut(s)	257, 721, 963
Bpu14I	TTCGAA	1 cut(s)	732
BsaAI	YACGTR	1 cut(s)	712
BsaJI	CCNNGG	4 cut(s)	181, 245, 289, 738
BsaWI	WCCGGW	1 cut(s)	890
BsaXI	ACNNNNNCTCC	6 cut(s)	57, 87, 596, 626, 912, 942
Bse3DI	GCAATG	1 cut(s)	777
BseBI	CCWGG	1 cut(s)	393
BseDI	CCNNGG	4 cut(s)	181, 245, 289, 738
BseGI	GGATG	1 cut(s)	703
BseMI	GCAATG	1 cut(s)	777
BseXI	GCAGC	1 cut(s)	712
BsgI	GTGCAG	1 cut(s)	417
BshFI	GGCC	5 cut(s)	633, 743, 756, 821, 830
BsiHKAI	GWGCWC	2 cut(s)	22, 885
BsiSI	CCGG	4 cut(s)	329, 891, 935, 1035
BslFI	GGGAC	2 cut(s)	271, 901
BsmAI	GTCTC	1 cut(s)	394
BsmBI	CGTCTC	1 cut(s)	394
BsmFI	GGGAC	2 cut(s)	271, 901
BsnI	GGCC	5 cut(s)	633, 743, 756, 821, 830
Bsp119I	TTCGAA	1 cut(s)	732
Bsp1286I	GDGCHC	2 cut(s)	22, 885
Bsp143I	GATC	3 cut(s)	456, 810, 915
Bsp19I	CCATGG	3 cut(s)	245, 289, 738
BspACI	CCGC	1 cut(s)	795
BspANI	GGCC	5 cut(s)	633, 743, 756, 821, 830
BspLI	GGNNCC	6 cut(s)	26, 286, 287, 382, 793, 889
BspMI	ACCTGC	2 cut(s)	219, 1003
BspPI	GGATC	2 cut(s)	451, 923
BspQI	GCTCTTC	2 cut(s)	88, 873
BspT104I	TTCGAA	1 cut(s)	732
BsrDI	GCAATG	1 cut(s)	777
BssECI	CCNNGG	4 cut(s)	181, 245, 289, 738
BssMI	GATC	3 cut(s)	456, 810, 915
BssT1I	CCWWGG	4 cut(s)	181, 245, 289, 738
Bst2UI	CCWGG	1 cut(s)	393
Bst4CI	ACNGT	1 cut(s)	625
Bst6I	CTCTTC	2 cut(s)	88, 873
BstBAI	YACGTR	1 cut(s)	712
BstBI	TTCGAA	1 cut(s)	732
BstC8I	GCNNGC	1 cut(s)	18
BstDSI	CCRYGG	3 cut(s)	245, 289, 738
BstF5I	GGATG	1 cut(s)	703
BstKTI	GATC	3 cut(s)	459, 813, 918
BstMAI	GTCTC	1 cut(s)	394
BstMBI	GATC	3 cut(s)	456, 810, 915
BstMWI	GCNNNNNNNGC	2 cut(s)	803, 827
BstNI	CCWGG	1 cut(s)	393
BstSCI	CCNGG	1 cut(s)	391
BstSFI	CTRYAG	1 cut(s)	621
BstV1I	GCAGC	1 cut(s)	712
BstV2I	GAAGAC	3 cut(s)	257, 721, 963
BstXI	CCANNNNNNTGG	2 cut(s)	235, 601
BsuRI	GGCC	5 cut(s)	633, 743, 756, 821, 830
BtgI	CCRYGG	3 cut(s)	245, 289, 738
BtsCI	GGATG	1 cut(s)	703
BtsIMutI	CAGTG	2 cut(s)	630, 920
BveI	ACCTGC	2 cut(s)	219, 1003
Cac8I	GCNNGC	1 cut(s)	18
Cfr13I	GGNCC	2 cut(s)	285, 888
CsiI	ACCWGGT	1 cut(s)	391
Csp6I	GTAC	1 cut(s)	166
CviQI	GTAC	1 cut(s)	166
DpnI	GATC	3 cut(s)	458, 812, 917
DpnII	GATC	3 cut(s)	456, 810, 915
EaeI	YGGCCR	3 cut(s)	741, 754, 819
Eam1104I	CTCTTC	2 cut(s)	88, 873
EarI	CTCTTC	2 cut(s)	88, 873
Ecl136II	GAGCTC	1 cut(s)	20
Eco130I	CCWWGG	4 cut(s)	181, 245, 289, 738
Eco24I	GRGCYC	1 cut(s)	22
Eco47I	GGWCC	2 cut(s)	285, 888
Eco53kI	GAGCTC	1 cut(s)	20
Eco57I	CTGAAG	2 cut(s)	481, 897
EcoICRI	GAGCTC	1 cut(s)	20
EcoO109I	RGGNCCY	1 cut(s)	285
EcoRII	CCWGG	1 cut(s)	391
EcoT14I	CCWWGG	4 cut(s)	181, 245, 289, 738
EcoT38I	GRGCYC	1 cut(s)	22
ErhI	CCWWGG	4 cut(s)	181, 245, 289, 738
Esp3I	CGTCTC	1 cut(s)	394
FaqI	GGGAC	2 cut(s)	271, 901
FbaI	TGATCA	1 cut(s)	810
Fnu4HI	GCNGC	2 cut(s)	701, 795
FokI	GGATG	1 cut(s)	690
FriOI	GRGCYC	1 cut(s)	22
Fsp4HI	GCNGC	2 cut(s)	701, 795
FspBI	CTAG	2 cut(s)	470, 1025
GluI	GCNGC	2 cut(s)	701, 795
HaeIII	GGCC	5 cut(s)	633, 743, 756, 821, 830
HapII	CCGG	4 cut(s)	329, 891, 935, 1035
HindIII	AAGCTT	1 cut(s)	263
HinfI	GANTC	6 cut(s)	241, 542, 583, 646, 1017, 1054
HpaII	CCGG	4 cut(s)	329, 891, 935, 1035
HphI	GGTGA	3 cut(s)	214, 250, 457
Hpy188I	TCNGA	6 cut(s)	49, 204, 516, 791, 1022, 1067
Hpy188III	TCNNGA	3 cut(s)	419, 587, 643
HpyAV	CCTTC	1 cut(s)	394
HpyCH4III	ACNGT	1 cut(s)	625
HpyCH4IV	ACGT	2 cut(s)	426, 711
HpyCH4V	TGCA	5 cut(s)	214, 434, 479, 562, 782
HpyF10VI	GCNNNNNNNGC	2 cut(s)	803, 827
HpySE526I	ACGT	2 cut(s)	426, 711
KflI	GGGWCCC	1 cut(s)	285
Ksp22I	TGATCA	1 cut(s)	810
Kzo9I	GATC	3 cut(s)	456, 810, 915
LguI	GCTCTTC	2 cut(s)	88, 873
LmnI	GCTCC	3 cut(s)	380, 791, 1003
Lsp1109I	GCAGC	1 cut(s)	712
LweI	GCATC	3 cut(s)	466, 597, 712
MabI	ACCWGGT	1 cut(s)	391
MaeI	CTAG	2 cut(s)	470, 1025
MaeII	ACGT	2 cut(s)	426, 711
MaeIII	GTNAC	2 cut(s)	554, 832
MalI	GATC	3 cut(s)	458, 812, 917
MboI	GATC	3 cut(s)	456, 810, 915
MboII	GAAGA	8 cut(s)	16, 75, 85, 262, 721, 890, 963, 1058
MfeI	CAATTG	1 cut(s)	1058
MhlI	GDGCHC	2 cut(s)	22, 885
MlsI	TGGCCA	1 cut(s)	743
MluCI	AATT	4 cut(s)	68, 149, 671, 1058
MluNI	TGGCCA	1 cut(s)	743
MlyI	GAGTC	1 cut(s)	1063
MmeI	TCCRAC	1 cut(s)	1045
MnlI	CCTC	4 cut(s)	83, 118, 426, 785
Mox20I	TGGCCA	1 cut(s)	743
MscI	TGGCCA	1 cut(s)	743
MseI	TTAA	3 cut(s)	111, 533, 872
MslI	CAYNNNNRTG	3 cut(s)	599, 806, 908
Msp20I	TGGCCA	1 cut(s)	743
MspI	CCGG	4 cut(s)	329, 891, 935, 1035
MspR9I	CCNGG	1 cut(s)	393
MunI	CAATTG	1 cut(s)	1058
MvaI	CCWGG	1 cut(s)	393
MwoI	GCNNNNNNNGC	2 cut(s)	803, 827
NcoI	CCATGG	3 cut(s)	245, 289, 738
NdeII	GATC	3 cut(s)	456, 810, 915
NlaIV	GGNNCC	6 cut(s)	26, 286, 287, 382, 793, 889
NmuCI	GTSAC	1 cut(s)	832
NspV	TTCGAA	1 cut(s)	732
PciSI	GCTCTTC	2 cut(s)	88, 873
PcsI	WCGNNNNNNNCGW	1 cut(s)	717
PfeI	GAWTC	5 cut(s)	241, 542, 583, 646, 1017
PkrI	GCNGC	2 cut(s)	702, 796
PleI	GAGTC	1 cut(s)	1062
PpsI	GAGTC	1 cut(s)	1062
Ppu21I	YACGTR	1 cut(s)	712
PpuMI	RGGWCCY	1 cut(s)	285
Psp124BI	GAGCTC	1 cut(s)	22
Psp5II	RGGWCCY	1 cut(s)	285
Psp6I	CCWGG	1 cut(s)	391
PspGI	CCWGG	1 cut(s)	391
PspN4I	GGNNCC	6 cut(s)	26, 286, 287, 382, 793, 889
PspPI	GGNCC	2 cut(s)	285, 888
PspPPI	RGGWCCY	1 cut(s)	285
RsaI	GTAC	1 cut(s)	167
RsaNI	GTAC	1 cut(s)	166
RseI	CAYNNNNRTG	3 cut(s)	599, 806, 908
SacI	GAGCTC	1 cut(s)	22
SapI	GCTCTTC	2 cut(s)	88, 873
SaqAI	TTAA	3 cut(s)	111, 533, 872
SatI	GCNGC	2 cut(s)	701, 795
Sau3AI	GATC	3 cut(s)	456, 810, 915
Sau96I	GGNCC	2 cut(s)	285, 888
SchI	GAGTC	1 cut(s)	1063
ScrFI	CCNGG	1 cut(s)	393
SduI	GDGCHC	2 cut(s)	22, 885
SexAI	ACCWGGT	1 cut(s)	391
SfaNI	GCATC	3 cut(s)	466, 597, 712
SfcI	CTRYAG	1 cut(s)	621
SfiI	GGCCNNNNNGGCC	1 cut(s)	827
SfuI	TTCGAA	1 cut(s)	732
SinI	GGWCC	2 cut(s)	285, 888
SmiMI	CAYNNNNRTG	3 cut(s)	599, 806, 908
Sse9I	AATT	4 cut(s)	68, 149, 671, 1058
SsiI	CCGC	1 cut(s)	795
SspMI	CTAG	2 cut(s)	470, 1025
SstI	GAGCTC	1 cut(s)	22
StyD4I	CCNGG	1 cut(s)	391
StyI	CCWWGG	4 cut(s)	181, 245, 289, 738
TaaI	ACNGT	1 cut(s)	625
TaiI	ACGT	2 cut(s)	429, 714
TaqI	TCGA	3 cut(s)	350, 732, 1005
TasI	AATT	4 cut(s)	68, 149, 671, 1058
TauI	GCSGC	1 cut(s)	797
TfiI	GAWTC	5 cut(s)	241, 542, 583, 646, 1017
Tru1I	TTAA	3 cut(s)	111, 533, 872
Tru9I	TTAA	3 cut(s)	111, 533, 872
TscAI	CASTG	2 cut(s)	630, 927
TseFI	GTSAC	1 cut(s)	832
TseI	GCWGC	1 cut(s)	700
Tsp45I	GTSAC	1 cut(s)	832
TspDTI	ATGAA	4 cut(s)	17, 376, 596, 1059
TspGWI	ACGGA	1 cut(s)	754
TspRI	CASTG	2 cut(s)	630, 927
VpaK11BI	GGWCC	2 cut(s)	285, 888
XcmI	CCANNNNNNNNNTGG	2 cut(s)	232, 307
XspI	CTAG	2 cut(s)	470, 1025

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.