Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002464.1

Orthogroup ID

OG0000871

Physical Location & Seq

Genomic Coordinates Reverse (-)

32321 .. 35313

Gene Structure 2993 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002464.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

atgaagagcgaagaacaagctcggtttctgtttgggatttcgctctctgatagacccaaatggcagcaattcctgctttgctcttctgggttcttctttggttatctggttaatggtgtctgtgaggaatatgtgtataacaggctacaattcagttatgggtggtacttcacatttgtacaaggatttgtgtacctatttctgatttatcttcaaggctttaccaccaagcaaatggtgaacccatggaagacttatgtgaagctatctgctgtgcttatgggctctcatggacttaccaaagggctctcatggacttaccaaaggctccttggcttttctcaactaccctgcacagctaatgtgaaatcaacaaaggttttgcctgtgatgataatgggagccttcataccaggtttgaggcggaagtacccacctcatgagtacgtttctgcaatccttctggtggtgggtctgatcctattcaccttagcggatgcacaaacgtctcccaacttcagcgtgattggtgtggtgatggtatcgggtgctctagtcatggattcgtttttgggtaatttgcaagaagcaatatttaccatgaatcctgaaaccacacagatggagatgctgttttgctctacagtagttggtctacctttcttggtgccaccaatgattttgacaggagaattattcaaagcgtggagttcatgttctcagcatccatacgtatatggtgtgttagtctttgaagccatggccacgtttattggccaagtttctgtcctttccctcattgcactttttggtgctgccaccacagccatgataacaacggctaggaaggcagtgacattattgctatcatacttgatattcacaaagccattaaccgaagagcacgggactggacttctgctcataggtatggggatcacattgaagctcttgcctgagaataaaccataccaaagggtttcaaactcatcatctggcaaacccaagagttcaaagccagctcataacgaagaggagataattcaacttgaccatcaacatgttggagaagatgaagaaaagaggccattggtctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0006810 GO:0006811 GO:0006820 GO:0006862 GO:0008150 GO:0008509 GO:0008514 GO:0012505 GO:0015075 GO:0015215 GO:0015216 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015868 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0022857 GO:0030173 GO:0030176 GO:0031090 GO:0031224 GO:0031227 GO:0031228 GO:0031300 GO:0031301 GO:0031984 GO:0034220 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046963 GO:0046964 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0071702 GO:0071705 GO:0072348 GO:0072530 GO:0098588 GO:0098656 GO:0098791 GO:0098827 GO:1901264 GO:1901505 GO:1901679 GO:1901682 GO:1902559

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UAA

Protein Analysis

365

Amino Acids

40.72

Weight (kDa)

8.46

Isoelectric Point (pI)

32.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000871)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12600 AT4G23010 AT4G23010 AT4G23010
fragaria_vesca	FvH4_5g01421 FvH4_5g01421 FvH4_7g12950 FvH4_7g12950 FvH4_7g12950
malus_domestica	MD02G1194900.v1.1 MD04G1068500.v1.1 MD07G1125700.v1.1
prunus_persica	Prupe.2G153800_v2.0.a1 Prupe.5G089700_v2.0.a1 Prupe.5G089700_v2.0.a1
pyrus_communis	pycom02g15880 pycom04g06180 pycom07g11930
rosa_chinensis	RchiOBHm_Chr0c16g0499921 RchiOBHm_Chr1g0347281 RchiOBHm_Chr1g0352081 RchiOBHm_Chr3g0455881 RchiOBHm_Chr4g0437881 RchiOBHm_Chr7g0199431
rosa_laevigata	RLG00000002748 RLG00000003793 RLG00000006404 RLG00000028361
rosa_multiflora	Rmu_sc0002453.1_g000013 Rmu_sc0002464.1_g000008 Rmu_sc0003781.1_g000011 Rmu_sc0008907.1_g000006 Rmu_sc0010560.1_g000004
rosa_roxburghii	Rroxscaffold_3G00256730 Rroxscaffold_4G00303280 Rroxscaffold_5G00361360
rosa_rugosa	Rorug01G0080000 Rorug01G0223900 Rorug01G0224000 Rorug01G0224100 Rorug02G0308800 Rorug02G0308900 Rorug02G0309000 Rorug02G0515400 Rorug04G0305100 Rorug06G0238700 Rorug06G0238800 Rorug06G0238900 Rorug06G0239000 Rorug07G0053800 Rorug07G0053900.1 Rorug07G0054000
rosa_samantha	Rh1CG222900 Rh4BG367900 Rh4CG154300 Rh4CG381900 Rh4DG362500 Rh6BG359000 Rh6DG293200 Rh7AG179000 Rh7CG187600 Rh7DG181900
rosa_wichuraiana	Rw0G011570 Rw1G020720 Rw5G045820 Rw7G015720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	667
AccI	GTMKAC	1 cut(s)	655
AciI	CCGC	2 cut(s)	424, 494
AclWI	GGATC	2 cut(s)	472, 944
AcoI	YGGCCR	2 cut(s)	762, 775
AcuI	CTGAAG	1 cut(s)	502
AfaI	GTAC	5 cut(s)	167, 180, 194, 431, 446
AfiI	CCNNNNNNNGG	1 cut(s)	466
AflIII	ACRYGT	1 cut(s)	1060
AgsI	TTSAA	7 cut(s)	215, 700, 755, 946, 984, 1014, 1046
AjnI	CCWGG	1 cut(s)	412
AloI	GAACNNNNNNTCC	2 cut(s)	700, 732
AluBI	AGCT	5 cut(s)	20, 265, 359, 949, 1022
AluI	AGCT	5 cut(s)	20, 265, 359, 949, 1022
Alw21I	GWGCWC	2 cut(s)	553, 906
Alw26I	GTCTC	1 cut(s)	513
AlwI	GGATC	2 cut(s)	472, 944
AoxI	GGCC	3 cut(s)	762, 775, 1085
ApeKI	GCWGC	2 cut(s)	64, 815
AsuHPI	GGTGA	3 cut(s)	250, 478, 547
BalI	TGGCCA	2 cut(s)	764, 777
BanI	GGYRCC	1 cut(s)	667
BanII	GRGCYC	2 cut(s)	287, 309
BbsI	GAAGAC	1 cut(s)	257
Bbv12I	GWGCWC	2 cut(s)	553, 906
BbvI	GCAGC	2 cut(s)	76, 802
BccI	CCATC	3 cut(s)	532, 616, 1062
BceAI	ACGGC	1 cut(s)	855
BciT130I	CCWGG	1 cut(s)	414
BcoDI	GTCTC	1 cut(s)	513
BfaI	CTAG	2 cut(s)	554, 843
BfmI	CTRYAG	1 cut(s)	642
BisI	GCNGC	2 cut(s)	65, 816
BlsI	GCNGC	2 cut(s)	66, 817
Bme1390I	CCNGG	1 cut(s)	414
BmiI	GGNNCC	3 cut(s)	329, 403, 669
BmrFI	CCNGG	1 cut(s)	414
BmsI	GCATC	3 cut(s)	487, 618, 733
BpiI	GAAGAC	1 cut(s)	257
Bpu10I	CCTNAGC	1 cut(s)	490
BsaAI	YACGTR	1 cut(s)	733
BsaJI	CCNNGG	3 cut(s)	245, 331, 759
BsaXI	ACNNNNNCTCC	4 cut(s)	617, 647, 700, 730
Bsc4I	CCNNNNNNNGG	1 cut(s)	466
Bse1I	ACTGG	1 cut(s)	916
Bse3DI	GCAATG	1 cut(s)	798
BseBI	CCWGG	1 cut(s)	414
BseDI	CCNNGG	3 cut(s)	245, 331, 759
BseGI	GGATG	2 cut(s)	502, 724
BseLI	CCNNNNNNNGG	1 cut(s)	466
BseMI	GCAATG	1 cut(s)	798
BseMII	CTCAG	2 cut(s)	734, 948
BseNI	ACTGG	1 cut(s)	916
BseRI	GAGGAG	1 cut(s)	1049
BseXI	GCAGC	2 cut(s)	76, 802
BsgI	GTGCAG	1 cut(s)	337
BshFI	GGCC	3 cut(s)	764, 777, 1087
BshNI	GGYRCC	1 cut(s)	667
BsiHKAI	GWGCWC	2 cut(s)	553, 906
BslFI	GGGAC	1 cut(s)	922
BslI	CCNNNNNNNGG	1 cut(s)	466
BsmAI	GTCTC	1 cut(s)	513
BsmBI	CGTCTC	1 cut(s)	513
BsmFI	GGGAC	1 cut(s)	922
BsnI	GGCC	3 cut(s)	764, 777, 1087
Bsp1286I	GDGCHC	4 cut(s)	287, 309, 553, 906
Bsp1407I	TGTACA	1 cut(s)	178
Bsp143I	GATC	2 cut(s)	477, 936
Bsp19I	CCATGG	2 cut(s)	245, 759
BspACI	CCGC	2 cut(s)	424, 494
BspANI	GGCC	3 cut(s)	764, 777, 1087
BspCNI	CTCAG	2 cut(s)	733, 949
BspHI	TCATGA	1 cut(s)	439
BspLI	GGNNCC	3 cut(s)	329, 403, 669
BspPI	GGATC	2 cut(s)	472, 944
BspQI	GCTCTTC	2 cut(s)	88, 894
BspT107I	GGYRCC	1 cut(s)	667
BsrDI	GCAATG	1 cut(s)	798
BsrGI	TGTACA	1 cut(s)	178
BsrI	ACTGG	1 cut(s)	916
BssECI	CCNNGG	3 cut(s)	245, 331, 759
BssMI	GATC	2 cut(s)	477, 936
BssT1I	CCWWGG	3 cut(s)	245, 331, 759
Bst2UI	CCWGG	1 cut(s)	414
Bst4CI	ACNGT	1 cut(s)	646
Bst6I	CTCTTC	3 cut(s)	88, 894, 1026
BstAPI	GCANNNNNTGC	1 cut(s)	73
BstAUI	TGTACA	1 cut(s)	178
BstBAI	YACGTR	1 cut(s)	733
BstC8I	GCNNGC	1 cut(s)	1020
BstDEI	CTNAG	3 cut(s)	490, 720, 957
BstDSI	CCRYGG	2 cut(s)	245, 759
BstF5I	GGATG	2 cut(s)	502, 724
BstKTI	GATC	2 cut(s)	480, 939
BstMAI	GTCTC	1 cut(s)	513
BstMBI	GATC	2 cut(s)	477, 936
BstMWI	GCNNNNNNNGC	3 cut(s)	73, 824, 848
BstNI	CCWGG	1 cut(s)	414
BstNSI	RCATGY	1 cut(s)	1064
BstSCI	CCNGG	1 cut(s)	412
BstSFI	CTRYAG	1 cut(s)	642
BstSNI	TACGTA	1 cut(s)	733
BstV1I	GCAGC	2 cut(s)	76, 802
BstV2I	GAAGAC	1 cut(s)	257
BstXI	CCANNNNNNTGG	2 cut(s)	235, 622
BsuRI	GGCC	3 cut(s)	764, 777, 1087
BtgI	CCRYGG	2 cut(s)	245, 759
BtsCI	GGATG	2 cut(s)	502, 724
BtsI	GCAGTG	1 cut(s)	858
BtsIMutI	CAGTG	1 cut(s)	858
Cac8I	GCNNGC	1 cut(s)	1020
CciI	TCATGA	1 cut(s)	439
CsiI	ACCWGGT	1 cut(s)	412
Csp6I	GTAC	5 cut(s)	166, 179, 193, 430, 445
CspCI	CAANNNNNGTGG	2 cut(s)	754, 789
CviQI	GTAC	5 cut(s)	166, 179, 193, 430, 445
DdeI	CTNAG	3 cut(s)	490, 720, 957
DpnI	GATC	2 cut(s)	479, 938
DpnII	GATC	2 cut(s)	477, 936
EaeI	YGGCCR	2 cut(s)	762, 775
Eam1104I	CTCTTC	3 cut(s)	88, 894, 1026
EarI	CTCTTC	3 cut(s)	88, 894, 1026
EciI	GGCGGA	1 cut(s)	439
Eco105I	TACGTA	1 cut(s)	733
Eco130I	CCWWGG	3 cut(s)	245, 331, 759
Eco24I	GRGCYC	2 cut(s)	287, 309
Eco57I	CTGAAG	1 cut(s)	502
EcoRII	CCWGG	1 cut(s)	412
EcoT14I	CCWWGG	3 cut(s)	245, 331, 759
EcoT38I	GRGCYC	2 cut(s)	287, 309
ErhI	CCWWGG	3 cut(s)	245, 331, 759
Esp3I	CGTCTC	1 cut(s)	513
FaqI	GGGAC	1 cut(s)	922
FblI	GTMKAC	1 cut(s)	655
Fnu4HI	GCNGC	2 cut(s)	65, 816
FokI	GGATG	2 cut(s)	509, 711
FriOI	GRGCYC	2 cut(s)	287, 309
Fsp4HI	GCNGC	2 cut(s)	65, 816
FspBI	CTAG	2 cut(s)	554, 843
GluI	GCNGC	2 cut(s)	65, 816
HaeIII	GGCC	3 cut(s)	764, 777, 1087
HinfI	GANTC	2 cut(s)	563, 604
HphI	GGTGA	3 cut(s)	250, 478, 547
Hpy166II	GTNNAC	3 cut(s)	193, 241, 656
Hpy188I	TCNGA	4 cut(s)	49, 204, 477, 1097
Hpy188III	TCNNGA	2 cut(s)	440, 608
Hpy8I	GTNNAC	3 cut(s)	193, 241, 656
HpyAV	CCTTC	3 cut(s)	415, 470, 841
HpyCH4III	ACNGT	1 cut(s)	646
HpyCH4IV	ACGT	4 cut(s)	447, 506, 732, 767
HpyCH4V	TGCA	5 cut(s)	354, 455, 500, 583, 803
HpyF10VI	GCNNNNNNNGC	3 cut(s)	73, 824, 848
HpyF3I	CTNAG	3 cut(s)	490, 720, 957
HpySE526I	ACGT	4 cut(s)	447, 506, 732, 767
Kzo9I	GATC	2 cut(s)	477, 936
LguI	GCTCTTC	2 cut(s)	88, 894
LmnI	GCTCC	2 cut(s)	333, 401
Lsp1109I	GCAGC	2 cut(s)	76, 802
LweI	GCATC	3 cut(s)	487, 618, 733
MabI	ACCWGGT	1 cut(s)	412
MaeI	CTAG	2 cut(s)	554, 843
MaeII	ACGT	4 cut(s)	447, 506, 732, 767
MaeIII	GTNAC	1 cut(s)	853
MalI	GATC	2 cut(s)	479, 938
MboI	GATC	2 cut(s)	477, 936
MhlI	GDGCHC	4 cut(s)	287, 309, 553, 906
MlsI	TGGCCA	2 cut(s)	764, 777
MluCI	AATT	5 cut(s)	68, 149, 577, 692, 1041
MluNI	TGGCCA	2 cut(s)	764, 777
MmeI	TCCRAC	1 cut(s)	1045
MnlI	CCTC	6 cut(s)	118, 414, 447, 806, 1027, 1077
Mox20I	TGGCCA	2 cut(s)	764, 777
MscI	TGGCCA	2 cut(s)	764, 777
MseI	TTAA	2 cut(s)	111, 893
MslI	CAYNNNNRTG	4 cut(s)	620, 827, 929, 1059
Msp20I	TGGCCA	2 cut(s)	764, 777
MspR9I	CCNGG	1 cut(s)	414
MvaI	CCWGG	1 cut(s)	414
MwoI	GCNNNNNNNGC	3 cut(s)	73, 824, 848
NcoI	CCATGG	2 cut(s)	245, 759
NdeII	GATC	2 cut(s)	477, 936
NlaIV	GGNNCC	3 cut(s)	329, 403, 669
NmuCI	GTSAC	1 cut(s)	853
NspI	RCATGY	1 cut(s)	1064
PagI	TCATGA	1 cut(s)	439
PciI	ACATGT	1 cut(s)	1060
PciSI	GCTCTTC	2 cut(s)	88, 894
PfeI	GAWTC	2 cut(s)	563, 604
PkrI	GCNGC	2 cut(s)	66, 817
Ppu21I	YACGTR	1 cut(s)	733
PscI	ACATGT	1 cut(s)	1060
Psp6I	CCWGG	1 cut(s)	412
PspGI	CCWGG	1 cut(s)	412
PspN4I	GGNNCC	3 cut(s)	329, 403, 669
RsaI	GTAC	5 cut(s)	167, 180, 194, 431, 446
RsaNI	GTAC	5 cut(s)	166, 179, 193, 430, 445
RseI	CAYNNNNRTG	4 cut(s)	620, 827, 929, 1059
SapI	GCTCTTC	2 cut(s)	88, 894
SaqAI	TTAA	2 cut(s)	111, 893
SatI	GCNGC	2 cut(s)	65, 816
Sau3AI	GATC	2 cut(s)	477, 936
ScrFI	CCNGG	1 cut(s)	414
SduI	GDGCHC	4 cut(s)	287, 309, 553, 906
SexAI	ACCWGGT	1 cut(s)	412
SfaNI	GCATC	3 cut(s)	487, 618, 733
SfcI	CTRYAG	1 cut(s)	642
SmiMI	CAYNNNNRTG	4 cut(s)	620, 827, 929, 1059
SnaBI	TACGTA	1 cut(s)	733
Sse9I	AATT	5 cut(s)	68, 149, 577, 692, 1041
SsiI	CCGC	2 cut(s)	424, 494
SspI	AATATT	1 cut(s)	594
SspMI	CTAG	2 cut(s)	554, 843
StyD4I	CCNGG	1 cut(s)	412
StyI	CCWWGG	3 cut(s)	245, 331, 759
TaaI	ACNGT	1 cut(s)	646
TaiI	ACGT	4 cut(s)	450, 509, 735, 770
TasI	AATT	5 cut(s)	68, 149, 577, 692, 1041
TatI	WGTACW	1 cut(s)	178
TfiI	GAWTC	2 cut(s)	563, 604
Tru1I	TTAA	2 cut(s)	111, 893
Tru9I	TTAA	2 cut(s)	111, 893
TscAI	CASTG	1 cut(s)	858
TseFI	GTSAC	1 cut(s)	853
TseI	GCWGC	2 cut(s)	64, 815
Tsp45I	GTSAC	1 cut(s)	853
TspDTI	ATGAA	5 cut(s)	17, 397, 617, 702, 1089
TspRI	CASTG	1 cut(s)	858
XceI	RCATGY	1 cut(s)	1064
XcmI	CCANNNNNNNNNTGG	3 cut(s)	232, 329, 1061
XmiI	GTMKAC	1 cut(s)	655
XspI	CTAG	2 cut(s)	554, 843

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.