Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0000871

Physical Location & Seq

Genomic Coordinates Reverse (-)

58414480 .. 58415538

Gene Structure 1059 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG362500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGAAGAATGAGGATCAAGCTAGGTTCCTCTTTGGTATATCACTCTCTGATAGGCCGGTTTGGCAACAATTCCTCATTTGTTCTTCTGGGTTTTTCTTTGGTTATCTTGTTAATGGCATTTGCGAGGAGTACGTGTACAATCGTCTCCAATTCAGCTATGGATGGTACTTCACCTTTGTACAAGGATTTGTGTACCTAGCGTTCATATACCTCCAAGGTTTCACCACCAAGAAAATGGTGAACCCATGGAGAACATATGTGAAGCTCTCCGCTGTTCTTATGGGTTCTCATGGATTGACCAAGGGATCCTTGGCTTGGCTCAATTACCCTGCCCAAATTATGTTCAAATCCACAAAGGTTCTGCCTGTGATGGTTATGGGGGCATTTATTCCTGGTCTGAGAAGGAAATACCCAATTCATGAGTACATATCCGCAATCCTCCTAGTTATTGGTCTCATCATTTTCACATTAGCAGATGCAAATACATCTCCCAATTTCAGCATATTGGGTGTGGTGATGATATCGGGCGCGCTAGTTATGGATGCCTTCATGGGGAATGTGCAAGAAGCAATCTTTACAATCAACCCTGACACCACCCAGACAGAGATGTTGTTCTGCTCAACAGTAGTTGGCTTGCCGATGCTACTTCCACCAATGATTCTTACCGGAGAACTCTCTAAGGCCTGGAATTCTTGCGCCGAGCATCCTTATGTGTATGGGGTCTTAGCGTTTGAAGCCATGGCCACATATGTTGGACAAGTATCTGTGCTATCCCTCATTGTGCTTTTTGGAGCCGCCACTACTGCTATGATAACAACGGCCAGGAAGGCGGTGACATTGTTGCTGTCGTACATGATATTTACAAAGCCATTGACGGAACAGCATGGTACAGGGCTAATGCTCATAGCCGCGGGAATCATACTGAAGATGGTGCCAGAAAACCAGGTTAACAAGCATGCAAAGTCTATCAAAGACGCCGTATTGATGATAAGCCCAAGAGCAAATGAAACAAGATTAGAAGTTGATGAGGACAATGAAGTGAACAAGGCCTTGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0006810 GO:0006811 GO:0006820 GO:0006862 GO:0008150 GO:0008509 GO:0008514 GO:0012505 GO:0015075 GO:0015215 GO:0015216 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015868 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0022857 GO:0030173 GO:0030176 GO:0031090 GO:0031224 GO:0031227 GO:0031228 GO:0031300 GO:0031301 GO:0031984 GO:0034220 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046963 GO:0046964 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0071702 GO:0071705 GO:0072348 GO:0072530 GO:0098588 GO:0098656 GO:0098791 GO:0098827 GO:1901264 GO:1901505 GO:1901679 GO:1901682 GO:1902559

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UAA

Protein Analysis

352

Amino Acids

39.16

Weight (kDa)

8.22

Isoelectric Point (pI)

24.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UAA	PF08449	23 - 311	1.4e-82	UAA transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000871)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12600 AT4G23010 AT4G23010 AT4G23010
fragaria_vesca	FvH4_5g01421 FvH4_5g01421 FvH4_7g12950 FvH4_7g12950 FvH4_7g12950
malus_domestica	MD02G1194900.v1.1 MD04G1068500.v1.1 MD07G1125700.v1.1
prunus_persica	Prupe.2G153800_v2.0.a1 Prupe.5G089700_v2.0.a1 Prupe.5G089700_v2.0.a1
pyrus_communis	pycom02g15880 pycom04g06180 pycom07g11930
rosa_chinensis	RchiOBHm_Chr0c16g0499921 RchiOBHm_Chr1g0347281 RchiOBHm_Chr1g0352081 RchiOBHm_Chr3g0455881 RchiOBHm_Chr4g0437881 RchiOBHm_Chr7g0199431
rosa_laevigata	RLG00000002748 RLG00000003793 RLG00000006404 RLG00000028361
rosa_multiflora	Rmu_sc0002453.1_g000013 Rmu_sc0002464.1_g000008 Rmu_sc0003781.1_g000011 Rmu_sc0008907.1_g000006 Rmu_sc0010560.1_g000004
rosa_roxburghii	Rroxscaffold_3G00256730 Rroxscaffold_4G00303280 Rroxscaffold_5G00361360
rosa_rugosa	Rorug01G0080000 Rorug01G0223900 Rorug01G0224000 Rorug01G0224100 Rorug02G0308800 Rorug02G0308900 Rorug02G0309000 Rorug02G0515400 Rorug04G0305100 Rorug06G0238700 Rorug06G0238800 Rorug06G0238900 Rorug06G0239000 Rorug07G0053800 Rorug07G0053900.1 Rorug07G0054000
rosa_samantha	Rh1CG222900 Rh4BG367900 Rh4CG154300 Rh4CG381900 Rh4DG362500 Rh6BG359000 Rh6DG293200 Rh7AG179000 Rh7CG187600 Rh7DG181900
rosa_wichuraiana	Rw0G011570 Rw1G020720 Rw5G045820 Rw7G015720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	931
AccII	CGCG	2 cut(s)	530, 911
AciI	CCGC	6 cut(s)	270, 432, 795, 830, 909, 911
AclWI	GGATC	3 cut(s)	21, 300, 313
AcoI	YGGCCR	2 cut(s)	741, 819
AcsI	RAATTY	1 cut(s)	688
AcuI	CTGAAG	1 cut(s)	944
AcyI	GRCGYC	1 cut(s)	975
AfaI	GTAC	8 cut(s)	131, 137, 167, 180, 194, 425, 851, 889
AfiI	CCNNNNNNNGG	2 cut(s)	315, 552
AflIII	ACRYGT	1 cut(s)	132
AgsI	TTSAA	2 cut(s)	346, 734
AjnI	CCWGG	4 cut(s)	391, 683, 821, 942
AjuI	GAANNNNNNNTTGG	1 cut(s)	1034
AluBI	AGCT	3 cut(s)	20, 156, 265
AluI	AGCT	3 cut(s)	20, 156, 265
Alw26I	GTCTC	2 cut(s)	149, 458
AlwI	GGATC	3 cut(s)	21, 300, 313
AoxI	GGCC	5 cut(s)	53, 681, 741, 819, 1047
ApoI	RAATTY	1 cut(s)	688
AspLEI	GCGC	3 cut(s)	530, 532, 698
AsuHPI	GGTGA	5 cut(s)	163, 214, 250, 526, 844
BalI	TGGCCA	1 cut(s)	743
BamHI	GGATCC	1 cut(s)	305
BanI	GGYRCC	1 cut(s)	931
BccI	CCATC	3 cut(s)	156, 364, 922
BceAI	ACGGC	2 cut(s)	834, 962
BciT130I	CCWGG	4 cut(s)	393, 685, 823, 944
BcoDI	GTCTC	2 cut(s)	149, 458
BfaI	CTAG	4 cut(s)	21, 197, 443, 533
BglI	GCCNNNNNGGC	2 cut(s)	61, 827
BisI	GCNGC	2 cut(s)	795, 909
BlsI	GCNGC	2 cut(s)	796, 910
Bme1390I	CCNGG	4 cut(s)	393, 685, 823, 944
BmiI	GGNNCC	4 cut(s)	26, 307, 793, 933
BmrFI	CCNGG	4 cut(s)	393, 685, 823, 944
BmsI	GCATC	4 cut(s)	466, 532, 630, 712
BsaAI	YACGTR	1 cut(s)	133
BsaHI	GRCGYC	1 cut(s)	975
BsaI	GGTCTC	1 cut(s)	458
BsaJI	CCNNGG	7 cut(s)	214, 245, 300, 309, 738, 909, 1050
BsaWI	WCCGGW	1 cut(s)	665
BsaXI	ACNNNNNCTCC	2 cut(s)	119, 149
Bsc4I	CCNNNNNNNGG	2 cut(s)	315, 552
Bse118I	RCCGGY	1 cut(s)	55
BseBI	CCWGG	4 cut(s)	393, 685, 823, 944
BseDI	CCNNGG	7 cut(s)	214, 245, 300, 309, 738, 909, 1050
BseGI	GGATG	3 cut(s)	167, 547, 703
BseLI	CCNNNNNNNGG	2 cut(s)	315, 552
BseMII	CTCAG	1 cut(s)	389
BsePI	GCGCGC	1 cut(s)	528
BseRI	GAGGAG	1 cut(s)	140
Bsh1236I	CGCG	2 cut(s)	530, 911
BshFI	GGCC	5 cut(s)	55, 683, 743, 821, 1049
BshNI	GGYRCC	1 cut(s)	931
BsiSI	CCGG	2 cut(s)	56, 666
BslI	CCNNNNNNNGG	2 cut(s)	315, 552
BsmAI	GTCTC	2 cut(s)	149, 458
BsmBI	CGTCTC	1 cut(s)	149
BsnI	GGCC	5 cut(s)	55, 683, 743, 821, 1049
Bso31I	GGTCTC	1 cut(s)	458
Bsp1407I	TGTACA	2 cut(s)	135, 178
Bsp143I	GATC	2 cut(s)	13, 305
Bsp19I	CCATGG	2 cut(s)	245, 738
BspACI	CCGC	6 cut(s)	270, 432, 795, 830, 909, 911
BspANI	GGCC	5 cut(s)	55, 683, 743, 821, 1049
BspCNI	CTCAG	1 cut(s)	390
BspFNI	CGCG	2 cut(s)	530, 911
BspHI	TCATGA	1 cut(s)	418
BspLI	GGNNCC	4 cut(s)	26, 307, 793, 933
BspPI	GGATC	3 cut(s)	21, 300, 313
BspT107I	GGYRCC	1 cut(s)	931
BspTNI	GGTCTC	1 cut(s)	458
BsrFI	RCCGGY	1 cut(s)	55
BsrGI	TGTACA	2 cut(s)	135, 178
BssAI	RCCGGY	1 cut(s)	55
BssECI	CCNNGG	7 cut(s)	214, 245, 300, 309, 738, 909, 1050
BssHII	GCGCGC	1 cut(s)	528
BssMI	GATC	2 cut(s)	13, 305
BssNI	GRCGYC	1 cut(s)	975
BssT1I	CCWWGG	6 cut(s)	214, 245, 300, 309, 738, 1050
Bst2UI	CCWGG	4 cut(s)	393, 685, 823, 944
Bst4CI	ACNGT	1 cut(s)	625
BstACI	GRCGYC	1 cut(s)	975
BstAUI	TGTACA	2 cut(s)	135, 178
BstBAI	YACGTR	1 cut(s)	133
BstC8I	GCNNGC	3 cut(s)	530, 635, 957
BstDEI	CTNAG	3 cut(s)	398, 678, 724
BstDSI	CCRYGG	3 cut(s)	245, 738, 909
BstF5I	GGATG	3 cut(s)	167, 547, 703
BstFNI	CGCG	2 cut(s)	530, 911
BstHHI	GCGC	3 cut(s)	530, 532, 698
BstKTI	GATC	2 cut(s)	16, 308
BstMAI	GTCTC	2 cut(s)	149, 458
BstMBI	GATC	2 cut(s)	13, 305
BstMWI	GCNNNNNNNGC	4 cut(s)	61, 734, 803, 827
BstNI	CCWGG	4 cut(s)	393, 685, 823, 944
BstNSI	RCATGY	1 cut(s)	959
BstSCI	CCNGG	4 cut(s)	391, 683, 821, 942
BstUI	CGCG	2 cut(s)	530, 911
BstX2I	RGATCY	1 cut(s)	305
BstXI	CCANNNNNNTGG	1 cut(s)	235
BstYI	RGATCY	1 cut(s)	305
BsuRI	GGCC	5 cut(s)	55, 683, 743, 821, 1049
BtgI	CCRYGG	3 cut(s)	245, 738, 909
BtsCI	GGATG	3 cut(s)	167, 547, 703
Cac8I	GCNNGC	3 cut(s)	530, 635, 957
CciI	TCATGA	1 cut(s)	418
CfoI	GCGC	3 cut(s)	530, 532, 698
Cfr10I	RCCGGY	1 cut(s)	55
Cfr42I	CCGCGG	1 cut(s)	912
CseI	GACGC	1 cut(s)	983
CsiI	ACCWGGT	1 cut(s)	942
Csp6I	GTAC	8 cut(s)	130, 136, 166, 179, 193, 424, 850, 888
CspCI	CAANNNNNGTGG	2 cut(s)	733, 768
CviAII	CATG	8 cut(s)	246, 290, 419, 550, 739, 853, 884, 956
CviQI	GTAC	8 cut(s)	130, 136, 166, 179, 193, 424, 850, 888
DdeI	CTNAG	3 cut(s)	398, 678, 724
DpnI	GATC	2 cut(s)	15, 307
DpnII	GATC	2 cut(s)	13, 305
EaeI	YGGCCR	2 cut(s)	741, 819
Eco130I	CCWWGG	6 cut(s)	214, 245, 300, 309, 738, 1050
Eco147I	AGGCCT	2 cut(s)	683, 1049
Eco31I	GGTCTC	1 cut(s)	458
Eco32I	GATATC	1 cut(s)	522
Eco57I	CTGAAG	1 cut(s)	944
EcoRI	GAATTC	1 cut(s)	688
EcoRII	CCWGG	4 cut(s)	391, 683, 821, 942
EcoRV	GATATC	1 cut(s)	522
EcoT14I	CCWWGG	6 cut(s)	214, 245, 300, 309, 738, 1050
ErhI	CCWWGG	6 cut(s)	214, 245, 300, 309, 738, 1050
Esp3I	CGTCTC	1 cut(s)	149
FaeI	CATG	8 cut(s)	249, 293, 422, 553, 742, 856, 887, 959
FalI	AAGNNNNNCTT	2 cut(s)	293, 325
FatI	CATG	8 cut(s)	245, 289, 418, 549, 738, 852, 883, 955
FauI	CCCGC	1 cut(s)	904
FauNDI	CATATG	2 cut(s)	256, 748
Fnu4HI	GCNGC	2 cut(s)	795, 909
FokI	GGATG	3 cut(s)	174, 554, 690
Fsp4HI	GCNGC	2 cut(s)	795, 909
FspBI	CTAG	4 cut(s)	21, 197, 443, 533
GlaI	GCGC	3 cut(s)	529, 531, 697
GluI	GCNGC	2 cut(s)	795, 909
HaeIII	GGCC	5 cut(s)	55, 683, 743, 821, 1049
HapII	CCGG	2 cut(s)	56, 666
HgaI	GACGC	1 cut(s)	983
HhaI	GCGC	3 cut(s)	530, 532, 698
Hin1I	GRCGYC	1 cut(s)	975
Hin1II	CATG	8 cut(s)	249, 293, 422, 553, 742, 856, 887, 959
Hin6I	GCGC	3 cut(s)	528, 530, 696
HinP1I	GCGC	3 cut(s)	528, 530, 696
HincII	GTYRAC	1 cut(s)	949
HindII	GTYRAC	1 cut(s)	949
HinfI	GANTC	2 cut(s)	658, 915
HpaI	GTTAAC	1 cut(s)	949
HpaII	CCGG	2 cut(s)	56, 666
HphI	GGTGA	5 cut(s)	163, 214, 250, 526, 844
Hpy166II	GTNNAC	5 cut(s)	136, 193, 241, 949, 1042
Hpy188I	TCNGA	2 cut(s)	49, 399
Hpy188III	TCNNGA	1 cut(s)	419
Hpy8I	GTNNAC	5 cut(s)	136, 193, 241, 949, 1042
HpyAV	CCTTC	3 cut(s)	396, 556, 820
HpyCH4III	ACNGT	1 cut(s)	625
HpyCH4IV	ACGT	1 cut(s)	132
HpyCH4V	TGCA	3 cut(s)	479, 562, 959
HpyF10VI	GCNNNNNNNGC	4 cut(s)	61, 734, 803, 827
HpyF3I	CTNAG	3 cut(s)	398, 678, 724
HpySE526I	ACGT	1 cut(s)	132
Hsp92I	GRCGYC	1 cut(s)	975
Hsp92II	CATG	8 cut(s)	249, 293, 422, 553, 742, 856, 887, 959
HspAI	GCGC	3 cut(s)	528, 530, 696
KspAI	GTTAAC	1 cut(s)	949
KspI	CCGCGG	1 cut(s)	912
Kzo9I	GATC	2 cut(s)	13, 305
LmnI	GCTCC	1 cut(s)	791
LweI	GCATC	4 cut(s)	466, 532, 630, 712
MabI	ACCWGGT	1 cut(s)	942
MaeI	CTAG	4 cut(s)	21, 197, 443, 533
MaeII	ACGT	1 cut(s)	132
MaeIII	GTNAC	1 cut(s)	832
MalI	GATC	2 cut(s)	15, 307
MboI	GATC	2 cut(s)	13, 305
MboII	GAAGA	3 cut(s)	16, 75, 937
MflI	RGATCY	1 cut(s)	305
MlsI	TGGCCA	1 cut(s)	743
MluCI	AATT	7 cut(s)	68, 149, 322, 336, 414, 493, 688
MluNI	TGGCCA	1 cut(s)	743
MmeI	TCCRAC	1 cut(s)	733
MnlI	CCTC	8 cut(s)	4, 38, 83, 118, 221, 449, 785, 1021
Mox20I	TGGCCA	1 cut(s)	743
MscI	TGGCCA	1 cut(s)	743
MseI	TTAA	2 cut(s)	111, 948
MslI	CAYNNNNRTG	1 cut(s)	708
Msp20I	TGGCCA	1 cut(s)	743
MspA1I	CMGCKG	2 cut(s)	272, 911
MspI	CCGG	2 cut(s)	56, 666
MspR9I	CCNGG	4 cut(s)	393, 685, 823, 944
MvaI	CCWGG	4 cut(s)	393, 685, 823, 944
MvnI	CGCG	2 cut(s)	530, 911
MwoI	GCNNNNNNNGC	4 cut(s)	61, 734, 803, 827
NcoI	CCATGG	2 cut(s)	245, 738
NdeI	CATATG	2 cut(s)	256, 748
NdeII	GATC	2 cut(s)	13, 305
NlaIII	CATG	8 cut(s)	249, 293, 422, 553, 742, 856, 887, 959
NlaIV	GGNNCC	4 cut(s)	26, 307, 793, 933
NmeAIII	GCCGAG	1 cut(s)	724
NmuCI	GTSAC	1 cut(s)	832
NspI	RCATGY	1 cut(s)	959
PaeI	GCATGC	1 cut(s)	959
PagI	TCATGA	1 cut(s)	418
PauI	GCGCGC	1 cut(s)	528
PceI	AGGCCT	2 cut(s)	683, 1049
PfeI	GAWTC	2 cut(s)	658, 915
PkrI	GCNGC	2 cut(s)	796, 910
Ppu21I	YACGTR	1 cut(s)	133
Psp6I	CCWGG	4 cut(s)	391, 683, 821, 942
PspGI	CCWGG	4 cut(s)	391, 683, 821, 942
PspN4I	GGNNCC	4 cut(s)	26, 307, 793, 933
PsrI	GAACNNNNNNTAC	2 cut(s)	185, 217
PsuI	RGATCY	1 cut(s)	305
PteI	GCGCGC	1 cut(s)	528
RsaI	GTAC	8 cut(s)	131, 137, 167, 180, 194, 425, 851, 889
RsaNI	GTAC	8 cut(s)	130, 136, 166, 179, 193, 424, 850, 888
RseI	CAYNNNNRTG	1 cut(s)	708
SacII	CCGCGG	1 cut(s)	912
SaqAI	TTAA	2 cut(s)	111, 948
SatI	GCNGC	2 cut(s)	795, 909
Sau3AI	GATC	2 cut(s)	13, 305
ScrFI	CCNGG	4 cut(s)	393, 685, 823, 944
SexAI	ACCWGGT	1 cut(s)	942
SfaNI	GCATC	4 cut(s)	466, 532, 630, 712
Sfr303I	CCGCGG	1 cut(s)	912
SgrBI	CCGCGG	1 cut(s)	912
SmiMI	CAYNNNNRTG	1 cut(s)	708
SphI	GCATGC	1 cut(s)	959
Sse9I	AATT	7 cut(s)	68, 149, 322, 336, 414, 493, 688
SseBI	AGGCCT	2 cut(s)	683, 1049
SsiI	CCGC	6 cut(s)	270, 432, 795, 830, 909, 911
SspMI	CTAG	4 cut(s)	21, 197, 443, 533
StuI	AGGCCT	2 cut(s)	683, 1049
StyD4I	CCNGG	4 cut(s)	391, 683, 821, 942
StyI	CCWWGG	6 cut(s)	214, 245, 300, 309, 738, 1050
TaaI	ACNGT	1 cut(s)	625
TaiI	ACGT	1 cut(s)	135
TasI	AATT	7 cut(s)	68, 149, 322, 336, 414, 493, 688
TatI	WGTACW	3 cut(s)	135, 178, 423
TauI	GCSGC	2 cut(s)	797, 911
TfiI	GAWTC	2 cut(s)	658, 915
Tru1I	TTAA	2 cut(s)	111, 948
Tru9I	TTAA	2 cut(s)	111, 948
TseFI	GTSAC	1 cut(s)	832
Tsp45I	GTSAC	1 cut(s)	832
TspDTI	ATGAA	6 cut(s)	17, 193, 407, 538, 1020, 1050
TspGWI	ACGGA	1 cut(s)	890
XapI	RAATTY	1 cut(s)	688
XceI	RCATGY	1 cut(s)	959
XcmI	CCANNNNNNNNNTGG	3 cut(s)	155, 232, 307
XspI	CTAG	4 cut(s)	21, 197, 443, 533

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.