Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002453.1

Orthogroup ID

OG0000871

Physical Location & Seq

Genomic Coordinates Forward (+)

64564 .. 66472

Gene Structure 1909 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002453.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

atgaagaacgaagaacaagctcggtttctgtttgggatttcgctctctgatagacccaaatggcagcaattcctgctttgctcttctgggttcttctttggttatctggttaatggtgtctgtgaggaatatgtgtataacaggctacaattcagttatgggtggtacttcacatttctatctgctgtacttatgggctctcatggacttaccaaaggctccttggcttttctcaactaccctgcacagctaatgttcaaatcaacaaaggttttgcctgtgatgataatgggagccttcataccaggtttgaggcggaagtacccacctcatgagtacgtttctgcaatccttctggtggtgggtctgatcctattcaccttagcggatgcacaaacgtctcccaacttcagcgtgattggtgtggtgatggtatcgggtgctctagtcatggattcgtttttgggtaatttgcaagaagcaatatttaccatgaatcctgaaaccacacagatggagatgttgttttgctctacagtagttggtctacctttcttggtgccaccaatgattttgacaggagaattattcaaagcgtggagttcatgttctcagcatccatacgtatatggtgtgttagtctttgaagccatggccacgtttattggccaagtttctgtcctttccctcaattatctttcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0006810 GO:0006811 GO:0006820 GO:0006862 GO:0008150 GO:0008509 GO:0008514 GO:0012505 GO:0015075 GO:0015215 GO:0015216 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015868 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0022857 GO:0030173 GO:0030176 GO:0031090 GO:0031224 GO:0031227 GO:0031228 GO:0031300 GO:0031301 GO:0031984 GO:0034220 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046963 GO:0046964 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0071702 GO:0071705 GO:0072348 GO:0072530 GO:0098588 GO:0098656 GO:0098791 GO:0098827 GO:1901264 GO:1901505 GO:1901679 GO:1901682 GO:1902559

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UAA

Protein Analysis

234

Amino Acids

26.13

Weight (kDa)

6.28

Isoelectric Point (pI)

30.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000871)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12600 AT4G23010 AT4G23010 AT4G23010
fragaria_vesca	FvH4_5g01421 FvH4_5g01421 FvH4_7g12950 FvH4_7g12950 FvH4_7g12950
malus_domestica	MD02G1194900.v1.1 MD04G1068500.v1.1 MD07G1125700.v1.1
prunus_persica	Prupe.2G153800_v2.0.a1 Prupe.5G089700_v2.0.a1 Prupe.5G089700_v2.0.a1
pyrus_communis	pycom02g15880 pycom04g06180 pycom07g11930
rosa_chinensis	RchiOBHm_Chr0c16g0499921 RchiOBHm_Chr1g0347281 RchiOBHm_Chr1g0352081 RchiOBHm_Chr3g0455881 RchiOBHm_Chr4g0437881 RchiOBHm_Chr7g0199431
rosa_laevigata	RLG00000002748 RLG00000003793 RLG00000006404 RLG00000028361
rosa_multiflora	Rmu_sc0002453.1_g000013 Rmu_sc0002464.1_g000008 Rmu_sc0003781.1_g000011 Rmu_sc0008907.1_g000006 Rmu_sc0010560.1_g000004
rosa_roxburghii	Rroxscaffold_3G00256730 Rroxscaffold_4G00303280 Rroxscaffold_5G00361360
rosa_rugosa	Rorug01G0080000 Rorug01G0223900 Rorug01G0224000 Rorug01G0224100 Rorug02G0308800 Rorug02G0308900 Rorug02G0309000 Rorug02G0515400 Rorug04G0305100 Rorug06G0238700 Rorug06G0238800 Rorug06G0238900 Rorug06G0239000 Rorug07G0053800 Rorug07G0053900.1 Rorug07G0054000
rosa_samantha	Rh1CG222900 Rh4BG367900 Rh4CG154300 Rh4CG381900 Rh4DG362500 Rh6BG359000 Rh6DG293200 Rh7AG179000 Rh7CG187600 Rh7DG181900
rosa_wichuraiana	Rw0G011570 Rw1G020720 Rw5G045820 Rw7G015720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	559
AccI	GTMKAC	1 cut(s)	547
AciI	CCGC	2 cut(s)	316, 386
AclWI	GGATC	1 cut(s)	364
AcoI	YGGCCR	2 cut(s)	654, 667
AcuI	CTGAAG	1 cut(s)	394
AfaI	GTAC	4 cut(s)	167, 189, 323, 338
AfiI	CCNNNNNNNGG	1 cut(s)	358
AgsI	TTSAA	3 cut(s)	259, 592, 647
AjnI	CCWGG	1 cut(s)	304
AloI	GAACNNNNNNTCC	2 cut(s)	592, 624
AluBI	AGCT	2 cut(s)	20, 250
AluI	AGCT	2 cut(s)	20, 250
Alw21I	GWGCWC	1 cut(s)	445
Alw26I	GTCTC	1 cut(s)	405
AlwI	GGATC	1 cut(s)	364
AoxI	GGCC	2 cut(s)	654, 667
ApeKI	GCWGC	1 cut(s)	64
AsuHPI	GGTGA	2 cut(s)	370, 439
BalI	TGGCCA	2 cut(s)	656, 669
BanI	GGYRCC	1 cut(s)	559
BanII	GRGCYC	1 cut(s)	200
Bbv12I	GWGCWC	1 cut(s)	445
BbvI	GCAGC	1 cut(s)	76
BccI	CCATC	2 cut(s)	424, 508
BciT130I	CCWGG	1 cut(s)	306
BcoDI	GTCTC	1 cut(s)	405
BfaI	CTAG	1 cut(s)	446
BfmI	CTRYAG	1 cut(s)	534
BisI	GCNGC	1 cut(s)	65
BlsI	GCNGC	1 cut(s)	66
Bme1390I	CCNGG	1 cut(s)	306
BmiI	GGNNCC	3 cut(s)	220, 295, 561
BmrFI	CCNGG	1 cut(s)	306
BmsI	GCATC	2 cut(s)	379, 625
Bpu10I	CCTNAGC	1 cut(s)	382
BsaAI	YACGTR	1 cut(s)	625
BsaJI	CCNNGG	2 cut(s)	222, 651
BsaXI	ACNNNNNCTCC	4 cut(s)	509, 539, 592, 622
Bsc4I	CCNNNNNNNGG	1 cut(s)	358
BseBI	CCWGG	1 cut(s)	306
BseDI	CCNNGG	2 cut(s)	222, 651
BseGI	GGATG	2 cut(s)	394, 616
BseLI	CCNNNNNNNGG	1 cut(s)	358
BseMII	CTCAG	1 cut(s)	626
BseXI	GCAGC	1 cut(s)	76
BsgI	GTGCAG	1 cut(s)	228
BshFI	GGCC	2 cut(s)	656, 669
BshNI	GGYRCC	1 cut(s)	559
BsiHKAI	GWGCWC	1 cut(s)	445
BslI	CCNNNNNNNGG	1 cut(s)	358
BsmAI	GTCTC	1 cut(s)	405
BsmBI	CGTCTC	1 cut(s)	405
BsnI	GGCC	2 cut(s)	656, 669
Bsp1286I	GDGCHC	2 cut(s)	200, 445
Bsp143I	GATC	1 cut(s)	369
Bsp19I	CCATGG	1 cut(s)	651
BspACI	CCGC	2 cut(s)	316, 386
BspANI	GGCC	2 cut(s)	656, 669
BspCNI	CTCAG	1 cut(s)	625
BspHI	TCATGA	1 cut(s)	331
BspLI	GGNNCC	3 cut(s)	220, 295, 561
BspPI	GGATC	1 cut(s)	364
BspQI	GCTCTTC	1 cut(s)	88
BspT107I	GGYRCC	1 cut(s)	559
BssECI	CCNNGG	2 cut(s)	222, 651
BssMI	GATC	1 cut(s)	369
BssT1I	CCWWGG	2 cut(s)	222, 651
Bst2UI	CCWGG	1 cut(s)	306
Bst4CI	ACNGT	1 cut(s)	538
Bst6I	CTCTTC	1 cut(s)	88
BstAPI	GCANNNNNTGC	1 cut(s)	73
BstBAI	YACGTR	1 cut(s)	625
BstDEI	CTNAG	2 cut(s)	382, 612
BstDSI	CCRYGG	1 cut(s)	651
BstF5I	GGATG	2 cut(s)	394, 616
BstKTI	GATC	1 cut(s)	372
BstMAI	GTCTC	1 cut(s)	405
BstMBI	GATC	1 cut(s)	369
BstMWI	GCNNNNNNNGC	1 cut(s)	73
BstNI	CCWGG	1 cut(s)	306
BstSCI	CCNGG	1 cut(s)	304
BstSFI	CTRYAG	1 cut(s)	534
BstSNI	TACGTA	1 cut(s)	625
BstV1I	GCAGC	1 cut(s)	76
BstXI	CCANNNNNNTGG	1 cut(s)	514
BsuRI	GGCC	2 cut(s)	656, 669
BtgI	CCRYGG	1 cut(s)	651
BtsCI	GGATG	2 cut(s)	394, 616
CciI	TCATGA	1 cut(s)	331
CsiI	ACCWGGT	1 cut(s)	304
Csp6I	GTAC	4 cut(s)	166, 188, 322, 337
CspCI	CAANNNNNGTGG	2 cut(s)	646, 681
CviAII	CATG	6 cut(s)	203, 332, 451, 493, 606, 652
CviQI	GTAC	4 cut(s)	166, 188, 322, 337
DdeI	CTNAG	2 cut(s)	382, 612
DpnI	GATC	1 cut(s)	371
DpnII	GATC	1 cut(s)	369
EaeI	YGGCCR	2 cut(s)	654, 667
Eam1104I	CTCTTC	1 cut(s)	88
EarI	CTCTTC	1 cut(s)	88
EciI	GGCGGA	1 cut(s)	331
Eco105I	TACGTA	1 cut(s)	625
Eco130I	CCWWGG	2 cut(s)	222, 651
Eco24I	GRGCYC	1 cut(s)	200
Eco57I	CTGAAG	1 cut(s)	394
EcoRII	CCWGG	1 cut(s)	304
EcoT14I	CCWWGG	2 cut(s)	222, 651
EcoT38I	GRGCYC	1 cut(s)	200
ErhI	CCWWGG	2 cut(s)	222, 651
Esp3I	CGTCTC	1 cut(s)	405
FaeI	CATG	6 cut(s)	206, 335, 454, 496, 609, 655
FatI	CATG	6 cut(s)	202, 331, 450, 492, 605, 651
FblI	GTMKAC	1 cut(s)	547
Fnu4HI	GCNGC	1 cut(s)	65
FokI	GGATG	2 cut(s)	401, 603
FriOI	GRGCYC	1 cut(s)	200
Fsp4HI	GCNGC	1 cut(s)	65
FspBI	CTAG	1 cut(s)	446
GluI	GCNGC	1 cut(s)	65
HaeIII	GGCC	2 cut(s)	656, 669
Hin1II	CATG	6 cut(s)	206, 335, 454, 496, 609, 655
HinfI	GANTC	2 cut(s)	455, 496
HphI	GGTGA	2 cut(s)	370, 439
Hpy166II	GTNNAC	1 cut(s)	548
Hpy188I	TCNGA	2 cut(s)	49, 369
Hpy188III	TCNNGA	3 cut(s)	332, 500, 702
Hpy8I	GTNNAC	1 cut(s)	548
HpyAV	CCTTC	2 cut(s)	307, 362
HpyCH4III	ACNGT	1 cut(s)	538
HpyCH4IV	ACGT	4 cut(s)	339, 398, 624, 659
HpyCH4V	TGCA	4 cut(s)	245, 347, 392, 475
HpyF10VI	GCNNNNNNNGC	1 cut(s)	73
HpyF3I	CTNAG	2 cut(s)	382, 612
HpySE526I	ACGT	4 cut(s)	339, 398, 624, 659
Hsp92II	CATG	6 cut(s)	206, 335, 454, 496, 609, 655
Kzo9I	GATC	1 cut(s)	369
LguI	GCTCTTC	1 cut(s)	88
LmnI	GCTCC	2 cut(s)	224, 293
Lsp1109I	GCAGC	1 cut(s)	76
LweI	GCATC	2 cut(s)	379, 625
MabI	ACCWGGT	1 cut(s)	304
MaeI	CTAG	1 cut(s)	446
MaeII	ACGT	4 cut(s)	339, 398, 624, 659
MalI	GATC	1 cut(s)	371
MboI	GATC	1 cut(s)	369
MboII	GAAGA	4 cut(s)	16, 23, 75, 85
MhlI	GDGCHC	2 cut(s)	200, 445
MlsI	TGGCCA	2 cut(s)	656, 669
MluCI	AATT	5 cut(s)	68, 149, 469, 584, 691
MluNI	TGGCCA	2 cut(s)	656, 669
MnlI	CCTC	4 cut(s)	118, 306, 339, 698
Mox20I	TGGCCA	2 cut(s)	656, 669
MscI	TGGCCA	2 cut(s)	656, 669
MseI	TTAA	1 cut(s)	111
MslI	CAYNNNNRTG	1 cut(s)	512
Msp20I	TGGCCA	2 cut(s)	656, 669
MspR9I	CCNGG	1 cut(s)	306
MvaI	CCWGG	1 cut(s)	306
MwoI	GCNNNNNNNGC	1 cut(s)	73
NcoI	CCATGG	1 cut(s)	651
NdeII	GATC	1 cut(s)	369
NlaIII	CATG	6 cut(s)	206, 335, 454, 496, 609, 655
NlaIV	GGNNCC	3 cut(s)	220, 295, 561
PagI	TCATGA	1 cut(s)	331
PciSI	GCTCTTC	1 cut(s)	88
PfeI	GAWTC	2 cut(s)	455, 496
PkrI	GCNGC	1 cut(s)	66
Ppu21I	YACGTR	1 cut(s)	625
Psp6I	CCWGG	1 cut(s)	304
PspGI	CCWGG	1 cut(s)	304
PspN4I	GGNNCC	3 cut(s)	220, 295, 561
RsaI	GTAC	4 cut(s)	167, 189, 323, 338
RsaNI	GTAC	4 cut(s)	166, 188, 322, 337
RseI	CAYNNNNRTG	1 cut(s)	512
SapI	GCTCTTC	1 cut(s)	88
SaqAI	TTAA	1 cut(s)	111
SatI	GCNGC	1 cut(s)	65
Sau3AI	GATC	1 cut(s)	369
ScrFI	CCNGG	1 cut(s)	306
SduI	GDGCHC	2 cut(s)	200, 445
SexAI	ACCWGGT	1 cut(s)	304
SfaNI	GCATC	2 cut(s)	379, 625
SfcI	CTRYAG	1 cut(s)	534
SmiMI	CAYNNNNRTG	1 cut(s)	512
SnaBI	TACGTA	1 cut(s)	625
Sse9I	AATT	5 cut(s)	68, 149, 469, 584, 691
SsiI	CCGC	2 cut(s)	316, 386
SspI	AATATT	1 cut(s)	486
SspMI	CTAG	1 cut(s)	446
StyD4I	CCNGG	1 cut(s)	304
StyI	CCWWGG	2 cut(s)	222, 651
TaaI	ACNGT	1 cut(s)	538
TaiI	ACGT	4 cut(s)	342, 401, 627, 662
TasI	AATT	5 cut(s)	68, 149, 469, 584, 691
TatI	WGTACW	1 cut(s)	187
TfiI	GAWTC	2 cut(s)	455, 496
Tru1I	TTAA	1 cut(s)	111
Tru9I	TTAA	1 cut(s)	111
TseI	GCWGC	1 cut(s)	64
TspDTI	ATGAA	4 cut(s)	17, 289, 509, 594
XcmI	CCANNNNNNNNNTGG	1 cut(s)	220
XmiI	GTMKAC	1 cut(s)	547
XspI	CTAG	1 cut(s)	446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.