Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0000871

Physical Location & Seq

Genomic Coordinates Reverse (-)

39075016 .. 39077865

Gene Structure 2850 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002748

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGAAGAACGAAGAACAAGCTCGGTTTCTGTTTGGGATTTCGATCTCTGATAGACCCAAATGGCAGCAATTCCTGCTTTGCTCTTCTGGGTTCTTCTTTGGTTATCTGGTTAATGGTGTCTGTGAGGAATATGTGTATAACAGGCTACAATTCAGTTATGGGTGGTACTTCACATTTGTACAAGGATTTGTGTATCTATTTCTGATTTATCTTCAAGGCTTTACCACCAAGAAAATGTTGAACCCATGGAAGACTTATGTGAAGCTATCTGCTGTGCTTATGGGCTCTCATGGACTTACCAAAGGCTCCTTGGCTTTTCTCAACTACCCTGCACAGCTAATGCTCAAATCAACAAAGGTTTTGCCTGTGATGATAATGGGAGCCTTCATACCAGGTTTGAGGCGGAAGTACCCACCTCATGAGTACGTTTCTGCAATCCTTCTGGTGGTGGGTCTGATCCTATTCACCTTAGCGGCTGCACAAACGTCTCCCAACTTCAGCGTGATTGGTGTGGTGATGGTATCGGGTGCTCTAGTCATGGATTCGTTTTTGGGTAATTTGCAAGAAGCAATATTTACCATGAATCCTGAAACCACACAGATGGAGATGCTGTTTTGCTCTACAGTTCTTGGTGCCACCAATGATTTTGACAGGAGAATTATTCAAAGCGTGGAGTTCATGTTCTCAGTTGCGCTTCATTTTAGGTGTGCTACTCGTGGAGGGACATTGAAAATGGAGGAAGACAGACCAGATGATGCCTGTGATGCCTACCATACATACTTTGGTGTAGCAGGGTTTTCCCTCCTTGAATATCCAATGGTGAACCCACAAATCCAGCTTATGCTTTGCCAGTTGATGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0006810 GO:0006811 GO:0006820 GO:0006862 GO:0008150 GO:0008509 GO:0008514 GO:0012505 GO:0015075 GO:0015215 GO:0015216 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015868 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0022857 GO:0030173 GO:0030176 GO:0031090 GO:0031224 GO:0031227 GO:0031228 GO:0031300 GO:0031301 GO:0031984 GO:0034220 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046963 GO:0046964 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0071702 GO:0071705 GO:0072348 GO:0072530 GO:0098588 GO:0098656 GO:0098791 GO:0098827 GO:1901264 GO:1901505 GO:1901679 GO:1901682 GO:1902559

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UAA

Protein Analysis

288

Amino Acids

32.55

Weight (kDa)

7.58

Isoelectric Point (pI)

32.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UAA	PF08449	23 - 215	1.8e-52	UAA transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000871)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12600 AT4G23010 AT4G23010 AT4G23010
fragaria_vesca	FvH4_5g01421 FvH4_5g01421 FvH4_7g12950 FvH4_7g12950 FvH4_7g12950
malus_domestica	MD02G1194900.v1.1 MD04G1068500.v1.1 MD07G1125700.v1.1
prunus_persica	Prupe.2G153800_v2.0.a1 Prupe.5G089700_v2.0.a1 Prupe.5G089700_v2.0.a1
pyrus_communis	pycom02g15880 pycom04g06180 pycom07g11930
rosa_chinensis	RchiOBHm_Chr0c16g0499921 RchiOBHm_Chr1g0347281 RchiOBHm_Chr1g0352081 RchiOBHm_Chr3g0455881 RchiOBHm_Chr4g0437881 RchiOBHm_Chr7g0199431
rosa_laevigata	RLG00000002748 RLG00000003793 RLG00000006404 RLG00000028361
rosa_multiflora	Rmu_sc0002453.1_g000013 Rmu_sc0002464.1_g000008 Rmu_sc0003781.1_g000011 Rmu_sc0008907.1_g000006 Rmu_sc0010560.1_g000004
rosa_roxburghii	Rroxscaffold_3G00256730 Rroxscaffold_4G00303280 Rroxscaffold_5G00361360
rosa_rugosa	Rorug01G0080000 Rorug01G0223900 Rorug01G0224000 Rorug01G0224100 Rorug02G0308800 Rorug02G0308900 Rorug02G0309000 Rorug02G0515400 Rorug04G0305100 Rorug06G0238700 Rorug06G0238800 Rorug06G0238900 Rorug06G0239000 Rorug07G0053800 Rorug07G0053900.1 Rorug07G0054000
rosa_samantha	Rh1CG222900 Rh4BG367900 Rh4CG154300 Rh4CG381900 Rh4DG362500 Rh6BG359000 Rh6DG293200 Rh7AG179000 Rh7CG187600 Rh7DG181900
rosa_wichuraiana	Rw0G011570 Rw1G020720 Rw5G045820 Rw7G015720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	632
AciI	CCGC	2 cut(s)	403, 473
AclWI	GGATC	1 cut(s)	451
AcuI	CTGAAG	1 cut(s)	481
AfaI	GTAC	4 cut(s)	167, 180, 410, 425
AfiI	CCNNNNNNNGG	1 cut(s)	445
AgsI	TTSAA	5 cut(s)	215, 241, 665, 730, 809
AjnI	CCWGG	1 cut(s)	391
AloI	GAACNNNNNNTCC	2 cut(s)	665, 697
AluBI	AGCT	4 cut(s)	20, 265, 337, 838
AluI	AGCT	4 cut(s)	20, 265, 337, 838
Alw21I	GWGCWC	1 cut(s)	532
Alw26I	GTCTC	1 cut(s)	492
AlwI	GGATC	1 cut(s)	451
ApeKI	GCWGC	2 cut(s)	64, 476
AspLEI	GCGC	1 cut(s)	694
AsuHPI	GGTGA	3 cut(s)	457, 526, 832
BanI	GGYRCC	1 cut(s)	632
BanII	GRGCYC	1 cut(s)	287
BauI	CACGAG	1 cut(s)	714
BbsI	GAAGAC	2 cut(s)	257, 747
Bbv12I	GWGCWC	1 cut(s)	532
BbvI	GCAGC	2 cut(s)	76, 463
BccI	CCATC	2 cut(s)	511, 595
BciT130I	CCWGG	1 cut(s)	393
BcoDI	GTCTC	1 cut(s)	492
BfaI	CTAG	1 cut(s)	533
BfmI	CTRYAG	1 cut(s)	621
BisI	GCNGC	3 cut(s)	65, 474, 477
BlsI	GCNGC	3 cut(s)	66, 475, 478
Bme1390I	CCNGG	1 cut(s)	393
BmiI	GGNNCC	3 cut(s)	307, 382, 634
BmrFI	CCNGG	1 cut(s)	393
BmsI	GCATC	3 cut(s)	597, 745, 754
BpiI	GAAGAC	2 cut(s)	257, 747
Bpu10I	CCTNAGC	1 cut(s)	469
BsaBI	GATNNNNATC	1 cut(s)	41
BsaJI	CCNNGG	2 cut(s)	245, 309
BsaXI	ACNNNNNCTCC	4 cut(s)	596, 626, 665, 695
Bsc4I	CCNNNNNNNGG	1 cut(s)	445
Bse1I	ACTGG	1 cut(s)	850
Bse8I	GATNNNNATC	1 cut(s)	41
BseBI	CCWGG	1 cut(s)	393
BseDI	CCNNGG	2 cut(s)	245, 309
BseJI	GATNNNNATC	1 cut(s)	41
BseLI	CCNNNNNNNGG	1 cut(s)	445
BseMII	CTCAG	1 cut(s)	699
BseNI	ACTGG	1 cut(s)	850
BseXI	GCAGC	2 cut(s)	76, 463
BsgI	GTGCAG	2 cut(s)	315, 462
BshNI	GGYRCC	1 cut(s)	632
BsiHKAI	GWGCWC	1 cut(s)	532
BslFI	GGGAC	1 cut(s)	736
BslI	CCNNNNNNNGG	1 cut(s)	445
BsmAI	GTCTC	1 cut(s)	492
BsmBI	CGTCTC	1 cut(s)	492
BsmFI	GGGAC	1 cut(s)	736
Bsp1286I	GDGCHC	2 cut(s)	287, 532
Bsp1407I	TGTACA	1 cut(s)	178
Bsp143I	GATC	2 cut(s)	42, 456
Bsp19I	CCATGG	1 cut(s)	245
BspACI	CCGC	2 cut(s)	403, 473
BspCNI	CTCAG	1 cut(s)	698
BspHI	TCATGA	1 cut(s)	418
BspLI	GGNNCC	3 cut(s)	307, 382, 634
BspPI	GGATC	1 cut(s)	451
BspQI	GCTCTTC	1 cut(s)	88
BspT107I	GGYRCC	1 cut(s)	632
BsrGI	TGTACA	1 cut(s)	178
BsrI	ACTGG	1 cut(s)	850
BssECI	CCNNGG	2 cut(s)	245, 309
BssMI	GATC	2 cut(s)	42, 456
BssSI	CACGAG	1 cut(s)	714
BssT1I	CCWWGG	2 cut(s)	245, 309
Bst2BI	CACGAG	1 cut(s)	714
Bst2UI	CCWGG	1 cut(s)	393
Bst4CI	ACNGT	1 cut(s)	625
Bst6I	CTCTTC	1 cut(s)	88
BstAPI	GCANNNNNTGC	1 cut(s)	73
BstAUI	TGTACA	1 cut(s)	178
BstDEI	CTNAG	2 cut(s)	469, 685
BstDSI	CCRYGG	1 cut(s)	245
BstHHI	GCGC	1 cut(s)	694
BstKTI	GATC	2 cut(s)	45, 459
BstMAI	GTCTC	1 cut(s)	492
BstMBI	GATC	2 cut(s)	42, 456
BstMWI	GCNNNNNNNGC	2 cut(s)	73, 764
BstNI	CCWGG	1 cut(s)	393
BstSCI	CCNGG	1 cut(s)	391
BstSFI	CTRYAG	1 cut(s)	621
BstV1I	GCAGC	2 cut(s)	76, 463
BstV2I	GAAGAC	2 cut(s)	257, 747
BstXI	CCANNNNNNTGG	1 cut(s)	601
BtgI	CCRYGG	1 cut(s)	245
CciI	TCATGA	1 cut(s)	418
CfoI	GCGC	1 cut(s)	694
CsiI	ACCWGGT	1 cut(s)	391
Csp6I	GTAC	4 cut(s)	166, 179, 409, 424
CviAII	CATG	6 cut(s)	246, 290, 419, 538, 580, 679
CviQI	GTAC	4 cut(s)	166, 179, 409, 424
DdeI	CTNAG	2 cut(s)	469, 685
DpnI	GATC	2 cut(s)	44, 458
DpnII	GATC	2 cut(s)	42, 456
Eam1104I	CTCTTC	1 cut(s)	88
EarI	CTCTTC	1 cut(s)	88
EciI	GGCGGA	1 cut(s)	418
Eco130I	CCWWGG	2 cut(s)	245, 309
Eco24I	GRGCYC	1 cut(s)	287
Eco57I	CTGAAG	1 cut(s)	481
EcoRII	CCWGG	1 cut(s)	391
EcoT14I	CCWWGG	2 cut(s)	245, 309
EcoT38I	GRGCYC	1 cut(s)	287
ErhI	CCWWGG	2 cut(s)	245, 309
Esp3I	CGTCTC	1 cut(s)	492
FaeI	CATG	6 cut(s)	249, 293, 422, 541, 583, 682
FaqI	GGGAC	1 cut(s)	736
FatI	CATG	6 cut(s)	245, 289, 418, 537, 579, 678
Fnu4HI	GCNGC	3 cut(s)	65, 474, 477
FriOI	GRGCYC	1 cut(s)	287
Fsp4HI	GCNGC	3 cut(s)	65, 474, 477
FspBI	CTAG	1 cut(s)	533
GlaI	GCGC	1 cut(s)	693
GluI	GCNGC	3 cut(s)	65, 474, 477
HhaI	GCGC	1 cut(s)	694
Hin1II	CATG	6 cut(s)	249, 293, 422, 541, 583, 682
Hin6I	GCGC	1 cut(s)	692
HinP1I	GCGC	1 cut(s)	692
HinfI	GANTC	2 cut(s)	542, 583
HphI	GGTGA	3 cut(s)	457, 526, 832
Hpy166II	GTNNAC	1 cut(s)	823
Hpy188I	TCNGA	3 cut(s)	49, 204, 456
Hpy188III	TCNNGA	2 cut(s)	419, 587
Hpy8I	GTNNAC	1 cut(s)	823
HpyAV	CCTTC	2 cut(s)	394, 449
HpyCH4III	ACNGT	1 cut(s)	625
HpyCH4IV	ACGT	2 cut(s)	426, 485
HpyCH4V	TGCA	4 cut(s)	332, 434, 479, 562
HpyF10VI	GCNNNNNNNGC	2 cut(s)	73, 764
HpyF3I	CTNAG	2 cut(s)	469, 685
HpySE526I	ACGT	2 cut(s)	426, 485
Hsp92II	CATG	6 cut(s)	249, 293, 422, 541, 583, 682
HspAI	GCGC	1 cut(s)	692
Kzo9I	GATC	2 cut(s)	42, 456
LguI	GCTCTTC	1 cut(s)	88
LmnI	GCTCC	2 cut(s)	311, 380
Lsp1109I	GCAGC	2 cut(s)	76, 463
LweI	GCATC	3 cut(s)	597, 745, 754
MabI	ACCWGGT	1 cut(s)	391
MaeI	CTAG	1 cut(s)	533
MaeII	ACGT	2 cut(s)	426, 485
MalI	GATC	2 cut(s)	44, 458
MboI	GATC	2 cut(s)	42, 456
MboII	GAAGA	7 cut(s)	16, 23, 75, 85, 203, 262, 752
MhlI	GDGCHC	2 cut(s)	287, 532
MluCI	AATT	4 cut(s)	68, 149, 556, 657
MnlI	CCTC	6 cut(s)	118, 393, 426, 713, 730, 812
MseI	TTAA	1 cut(s)	111
MslI	CAYNNNNRTG	1 cut(s)	599
MspR9I	CCNGG	1 cut(s)	393
MvaI	CCWGG	1 cut(s)	393
MwoI	GCNNNNNNNGC	2 cut(s)	73, 764
NcoI	CCATGG	1 cut(s)	245
NdeII	GATC	2 cut(s)	42, 456
NlaIII	CATG	6 cut(s)	249, 293, 422, 541, 583, 682
NlaIV	GGNNCC	3 cut(s)	307, 382, 634
PagI	TCATGA	1 cut(s)	418
PciSI	GCTCTTC	1 cut(s)	88
PfeI	GAWTC	2 cut(s)	542, 583
PkrI	GCNGC	3 cut(s)	66, 475, 478
Psp6I	CCWGG	1 cut(s)	391
PspGI	CCWGG	1 cut(s)	391
PspN4I	GGNNCC	3 cut(s)	307, 382, 634
RsaI	GTAC	4 cut(s)	167, 180, 410, 425
RsaNI	GTAC	4 cut(s)	166, 179, 409, 424
RseI	CAYNNNNRTG	1 cut(s)	599
SapI	GCTCTTC	1 cut(s)	88
SaqAI	TTAA	1 cut(s)	111
SatI	GCNGC	3 cut(s)	65, 474, 477
Sau3AI	GATC	2 cut(s)	42, 456
ScrFI	CCNGG	1 cut(s)	393
SduI	GDGCHC	2 cut(s)	287, 532
SexAI	ACCWGGT	1 cut(s)	391
SfaNI	GCATC	3 cut(s)	597, 745, 754
SfcI	CTRYAG	1 cut(s)	621
SmiMI	CAYNNNNRTG	1 cut(s)	599
Sse9I	AATT	4 cut(s)	68, 149, 556, 657
SsiI	CCGC	2 cut(s)	403, 473
SspI	AATATT	1 cut(s)	573
SspMI	CTAG	1 cut(s)	533
StyD4I	CCNGG	1 cut(s)	391
StyI	CCWWGG	2 cut(s)	245, 309
TaaI	ACNGT	1 cut(s)	625
TaiI	ACGT	2 cut(s)	429, 488
TaqI	TCGA	1 cut(s)	41
TasI	AATT	4 cut(s)	68, 149, 556, 657
TatI	WGTACW	1 cut(s)	178
TauI	GCSGC	1 cut(s)	476
TfiI	GAWTC	2 cut(s)	542, 583
Tru1I	TTAA	1 cut(s)	111
Tru9I	TTAA	1 cut(s)	111
TseI	GCWGC	2 cut(s)	64, 476
TspDTI	ATGAA	5 cut(s)	17, 376, 596, 667, 686
XcmI	CCANNNNNNNNNTGG	2 cut(s)	307, 779
XspI	CTAG	1 cut(s)	533

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.