Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000871

Physical Location & Seq

Genomic Coordinates Forward (+)

5469003 .. 5472007

Gene Structure 3005 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ42278

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGAAGAACGAAGAACAAGCTCGGTTTCTGTTTGGGATTTCGCTCTCTGATAGACCCAAATGGCAGCAATTCCTGCTTTGCTCTTCTGGGTTCTTCTTTGGTTATCTGGTTAATGGTGTCTGTGAGGCTACAATTCAGTTATGGGTGGTACTTCACATTTGTACAAGGATTTATGTATCTATTTCTGATTATCTTCAAGGCTTTACCACCAAGCAAATGGTAAACCCATGGAAGACTTATGTGAAGCTATCTGCTGTGCTTATGGGCTCTCATGGACTTACCAAAGGCTCCTTGGCTTTTCTCAACTACCCTGCACAGCTAATGTTCAAATCAACAAAGATTTTGCCTGTGATGATAATGGGAGCCTTCATACCAGGTTTGAGGCGGAAGTACCCACCTCATGAGTACGTTTCTGCAATCCTTCTGGTGGTGGGTCTGATCCTATTCACCTTAGCGGATGCACAAACGTCTCCCAACTTCAGCGTGATTGGTGTGGTGATGGTATCGGGTGCTCTAGTCATGGATTCGTTTTTGGGTAATTTGCAAGAAGCAATATTTACCAAGAATCCTGAAACCACACAGATGGAGATGTTGTTTTGCTCTACAGTAGTTGGTCTACCTTTCTTGGTGCCACCAATGATTTTGACAGGAGAATTATTCAAAGCGTGGAGTTCATTTTCTCAGCATCCATACGTATATGGTGTGTTAGTCTTTGAAGCCATGGCCACCTTTATTGGCCAAGTTTCTGTCCTTTCCCTCAATTATCTTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0006810 GO:0006811 GO:0006820 GO:0006862 GO:0008150 GO:0008509 GO:0008514 GO:0012505 GO:0015075 GO:0015215 GO:0015216 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015868 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0022857 GO:0030173 GO:0030176 GO:0031090 GO:0031224 GO:0031227 GO:0031228 GO:0031300 GO:0031301 GO:0031984 GO:0034220 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046963 GO:0046964 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0071702 GO:0071705 GO:0072348 GO:0072530 GO:0098588 GO:0098656 GO:0098791 GO:0098827 GO:1901264 GO:1901505 GO:1901679 GO:1901682 GO:1902559

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UAA

Protein Analysis

257

Amino Acids

28.65

Weight (kDa)

8.62

Isoelectric Point (pI)

30.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UAA	PF08449	23 - 254	4.8e-52	UAA transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000871)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12600 AT4G23010 AT4G23010 AT4G23010
fragaria_vesca	FvH4_5g01421 FvH4_5g01421 FvH4_7g12950 FvH4_7g12950 FvH4_7g12950
malus_domestica	MD02G1194900.v1.1 MD04G1068500.v1.1 MD07G1125700.v1.1
prunus_persica	Prupe.2G153800_v2.0.a1 Prupe.5G089700_v2.0.a1 Prupe.5G089700_v2.0.a1
pyrus_communis	pycom02g15880 pycom04g06180 pycom07g11930
rosa_chinensis	RchiOBHm_Chr0c16g0499921 RchiOBHm_Chr1g0347281 RchiOBHm_Chr1g0352081 RchiOBHm_Chr3g0455881 RchiOBHm_Chr4g0437881 RchiOBHm_Chr7g0199431
rosa_laevigata	RLG00000002748 RLG00000003793 RLG00000006404 RLG00000028361
rosa_multiflora	Rmu_sc0002453.1_g000013 Rmu_sc0002464.1_g000008 Rmu_sc0003781.1_g000011 Rmu_sc0008907.1_g000006 Rmu_sc0010560.1_g000004
rosa_roxburghii	Rroxscaffold_3G00256730 Rroxscaffold_4G00303280 Rroxscaffold_5G00361360
rosa_rugosa	Rorug01G0080000 Rorug01G0223900 Rorug01G0224000 Rorug01G0224100 Rorug02G0308800 Rorug02G0308900 Rorug02G0309000 Rorug02G0515400 Rorug04G0305100 Rorug06G0238700 Rorug06G0238800 Rorug06G0238900 Rorug06G0239000 Rorug07G0053800 Rorug07G0053900.1 Rorug07G0054000
rosa_samantha	Rh1CG222900 Rh4BG367900 Rh4CG154300 Rh4CG381900 Rh4DG362500 Rh6BG359000 Rh6DG293200 Rh7AG179000 Rh7CG187600 Rh7DG181900
rosa_wichuraiana	Rw0G011570 Rw1G020720 Rw5G045820 Rw7G015720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	628
AccI	GTMKAC	1 cut(s)	616
AciI	CCGC	2 cut(s)	385, 455
AclWI	GGATC	1 cut(s)	433
AcoI	YGGCCR	2 cut(s)	723, 736
AcuI	CTGAAG	1 cut(s)	463
AfaI	GTAC	4 cut(s)	150, 163, 392, 407
AfiI	CCNNNNNNNGG	1 cut(s)	427
AgsI	TTSAA	4 cut(s)	197, 328, 661, 716
AjnI	CCWGG	1 cut(s)	373
AluBI	AGCT	3 cut(s)	20, 247, 319
AluI	AGCT	3 cut(s)	20, 247, 319
Alw21I	GWGCWC	1 cut(s)	514
Alw26I	GTCTC	1 cut(s)	474
AlwI	GGATC	1 cut(s)	433
AoxI	GGCC	2 cut(s)	723, 736
ApeKI	GCWGC	1 cut(s)	64
AsuHPI	GGTGA	2 cut(s)	439, 508
BalI	TGGCCA	2 cut(s)	725, 738
BanI	GGYRCC	1 cut(s)	628
BanII	GRGCYC	1 cut(s)	269
BbsI	GAAGAC	1 cut(s)	239
Bbv12I	GWGCWC	1 cut(s)	514
BbvI	GCAGC	1 cut(s)	76
BccI	CCATC	2 cut(s)	493, 577
BciT130I	CCWGG	1 cut(s)	375
BcoDI	GTCTC	1 cut(s)	474
BfaI	CTAG	1 cut(s)	515
BfmI	CTRYAG	1 cut(s)	603
BisI	GCNGC	1 cut(s)	65
BlsI	GCNGC	1 cut(s)	66
Bme1390I	CCNGG	1 cut(s)	375
BmiI	GGNNCC	3 cut(s)	289, 364, 630
BmrFI	CCNGG	1 cut(s)	375
BmsI	GCATC	2 cut(s)	448, 694
BpiI	GAAGAC	1 cut(s)	239
Bpu10I	CCTNAGC	1 cut(s)	451
BsaAI	YACGTR	1 cut(s)	694
BsaJI	CCNNGG	3 cut(s)	227, 291, 720
BsaXI	ACNNNNNCTCC	2 cut(s)	578, 608
Bsc4I	CCNNNNNNNGG	1 cut(s)	427
BseBI	CCWGG	1 cut(s)	375
BseDI	CCNNGG	3 cut(s)	227, 291, 720
BseGI	GGATG	2 cut(s)	463, 685
BseLI	CCNNNNNNNGG	1 cut(s)	427
BseMII	CTCAG	1 cut(s)	695
BseXI	GCAGC	1 cut(s)	76
BsgI	GTGCAG	1 cut(s)	297
BshFI	GGCC	2 cut(s)	725, 738
BshNI	GGYRCC	1 cut(s)	628
BsiHKAI	GWGCWC	1 cut(s)	514
BslI	CCNNNNNNNGG	1 cut(s)	427
BsmAI	GTCTC	1 cut(s)	474
BsmBI	CGTCTC	1 cut(s)	474
BsnI	GGCC	2 cut(s)	725, 738
Bsp1286I	GDGCHC	2 cut(s)	269, 514
Bsp1407I	TGTACA	1 cut(s)	161
Bsp143I	GATC	1 cut(s)	438
Bsp19I	CCATGG	2 cut(s)	227, 720
BspACI	CCGC	2 cut(s)	385, 455
BspANI	GGCC	2 cut(s)	725, 738
BspCNI	CTCAG	1 cut(s)	694
BspHI	TCATGA	1 cut(s)	400
BspLI	GGNNCC	3 cut(s)	289, 364, 630
BspPI	GGATC	1 cut(s)	433
BspQI	GCTCTTC	1 cut(s)	88
BspT107I	GGYRCC	1 cut(s)	628
BsrGI	TGTACA	1 cut(s)	161
BssECI	CCNNGG	3 cut(s)	227, 291, 720
BssMI	GATC	1 cut(s)	438
BssT1I	CCWWGG	3 cut(s)	227, 291, 720
Bst2UI	CCWGG	1 cut(s)	375
Bst4CI	ACNGT	1 cut(s)	607
Bst6I	CTCTTC	1 cut(s)	88
BstAPI	GCANNNNNTGC	1 cut(s)	73
BstAUI	TGTACA	1 cut(s)	161
BstBAI	YACGTR	1 cut(s)	694
BstDEI	CTNAG	2 cut(s)	451, 681
BstDSI	CCRYGG	2 cut(s)	227, 720
BstF5I	GGATG	2 cut(s)	463, 685
BstKTI	GATC	1 cut(s)	441
BstMAI	GTCTC	1 cut(s)	474
BstMBI	GATC	1 cut(s)	438
BstMWI	GCNNNNNNNGC	1 cut(s)	73
BstNI	CCWGG	1 cut(s)	375
BstSCI	CCNGG	1 cut(s)	373
BstSFI	CTRYAG	1 cut(s)	603
BstSNI	TACGTA	1 cut(s)	694
BstV1I	GCAGC	1 cut(s)	76
BstV2I	GAAGAC	1 cut(s)	239
BstXI	CCANNNNNNTGG	2 cut(s)	217, 583
BsuRI	GGCC	2 cut(s)	725, 738
BtgI	CCRYGG	2 cut(s)	227, 720
BtsCI	GGATG	2 cut(s)	463, 685
CciI	TCATGA	1 cut(s)	400
CsiI	ACCWGGT	1 cut(s)	373
Csp6I	GTAC	4 cut(s)	149, 162, 391, 406
CspCI	CAANNNNNGTGG	2 cut(s)	715, 750
CviAII	CATG	5 cut(s)	228, 272, 401, 520, 721
CviQI	GTAC	4 cut(s)	149, 162, 391, 406
DdeI	CTNAG	2 cut(s)	451, 681
DpnI	GATC	1 cut(s)	440
DpnII	GATC	1 cut(s)	438
EaeI	YGGCCR	2 cut(s)	723, 736
Eam1104I	CTCTTC	1 cut(s)	88
EarI	CTCTTC	1 cut(s)	88
EciI	GGCGGA	1 cut(s)	400
Eco105I	TACGTA	1 cut(s)	694
Eco130I	CCWWGG	3 cut(s)	227, 291, 720
Eco24I	GRGCYC	1 cut(s)	269
Eco57I	CTGAAG	1 cut(s)	463
EcoRII	CCWGG	1 cut(s)	373
EcoT14I	CCWWGG	3 cut(s)	227, 291, 720
EcoT38I	GRGCYC	1 cut(s)	269
ErhI	CCWWGG	3 cut(s)	227, 291, 720
Esp3I	CGTCTC	1 cut(s)	474
FaeI	CATG	5 cut(s)	231, 275, 404, 523, 724
FatI	CATG	5 cut(s)	227, 271, 400, 519, 720
FblI	GTMKAC	1 cut(s)	616
Fnu4HI	GCNGC	1 cut(s)	65
FokI	GGATG	2 cut(s)	470, 672
FriOI	GRGCYC	1 cut(s)	269
Fsp4HI	GCNGC	1 cut(s)	65
FspBI	CTAG	1 cut(s)	515
GluI	GCNGC	1 cut(s)	65
HaeIII	GGCC	2 cut(s)	725, 738
Hin1II	CATG	5 cut(s)	231, 275, 404, 523, 724
HinfI	GANTC	2 cut(s)	524, 565
HphI	GGTGA	2 cut(s)	439, 508
Hpy166II	GTNNAC	2 cut(s)	223, 617
Hpy188I	TCNGA	3 cut(s)	49, 187, 438
Hpy188III	TCNNGA	3 cut(s)	401, 569, 771
Hpy8I	GTNNAC	2 cut(s)	223, 617
HpyAV	CCTTC	2 cut(s)	376, 431
HpyCH4III	ACNGT	1 cut(s)	607
HpyCH4IV	ACGT	3 cut(s)	408, 467, 693
HpyCH4V	TGCA	4 cut(s)	314, 416, 461, 544
HpyF10VI	GCNNNNNNNGC	1 cut(s)	73
HpyF3I	CTNAG	2 cut(s)	451, 681
HpySE526I	ACGT	3 cut(s)	408, 467, 693
Hsp92II	CATG	5 cut(s)	231, 275, 404, 523, 724
Kzo9I	GATC	1 cut(s)	438
LguI	GCTCTTC	1 cut(s)	88
LmnI	GCTCC	2 cut(s)	293, 362
Lsp1109I	GCAGC	1 cut(s)	76
LweI	GCATC	2 cut(s)	448, 694
MabI	ACCWGGT	1 cut(s)	373
MaeI	CTAG	1 cut(s)	515
MaeII	ACGT	3 cut(s)	408, 467, 693
MalI	GATC	1 cut(s)	440
MboI	GATC	1 cut(s)	438
MboII	GAAGA	6 cut(s)	16, 23, 75, 85, 185, 244
MhlI	GDGCHC	2 cut(s)	269, 514
MlsI	TGGCCA	2 cut(s)	725, 738
MluCI	AATT	5 cut(s)	68, 132, 538, 653, 760
MluNI	TGGCCA	2 cut(s)	725, 738
MnlI	CCTC	4 cut(s)	118, 375, 408, 767
Mox20I	TGGCCA	2 cut(s)	725, 738
MscI	TGGCCA	2 cut(s)	725, 738
MseI	TTAA	1 cut(s)	111
MslI	CAYNNNNRTG	1 cut(s)	581
Msp20I	TGGCCA	2 cut(s)	725, 738
MspR9I	CCNGG	1 cut(s)	375
MvaI	CCWGG	1 cut(s)	375
MwoI	GCNNNNNNNGC	1 cut(s)	73
NcoI	CCATGG	2 cut(s)	227, 720
NdeII	GATC	1 cut(s)	438
NlaIII	CATG	5 cut(s)	231, 275, 404, 523, 724
NlaIV	GGNNCC	3 cut(s)	289, 364, 630
PagI	TCATGA	1 cut(s)	400
PciSI	GCTCTTC	1 cut(s)	88
PfeI	GAWTC	2 cut(s)	524, 565
PkrI	GCNGC	1 cut(s)	66
Ppu21I	YACGTR	1 cut(s)	694
Psp6I	CCWGG	1 cut(s)	373
PspGI	CCWGG	1 cut(s)	373
PspN4I	GGNNCC	3 cut(s)	289, 364, 630
RsaI	GTAC	4 cut(s)	150, 163, 392, 407
RsaNI	GTAC	4 cut(s)	149, 162, 391, 406
RseI	CAYNNNNRTG	1 cut(s)	581
SapI	GCTCTTC	1 cut(s)	88
SaqAI	TTAA	1 cut(s)	111
SatI	GCNGC	1 cut(s)	65
Sau3AI	GATC	1 cut(s)	438
ScrFI	CCNGG	1 cut(s)	375
SduI	GDGCHC	2 cut(s)	269, 514
SexAI	ACCWGGT	1 cut(s)	373
SfaNI	GCATC	2 cut(s)	448, 694
SfcI	CTRYAG	1 cut(s)	603
SmiMI	CAYNNNNRTG	1 cut(s)	581
SnaBI	TACGTA	1 cut(s)	694
Sse9I	AATT	5 cut(s)	68, 132, 538, 653, 760
SsiI	CCGC	2 cut(s)	385, 455
SspI	AATATT	1 cut(s)	555
SspMI	CTAG	1 cut(s)	515
StyD4I	CCNGG	1 cut(s)	373
StyI	CCWWGG	3 cut(s)	227, 291, 720
TaaI	ACNGT	1 cut(s)	607
TaiI	ACGT	3 cut(s)	411, 470, 696
TasI	AATT	5 cut(s)	68, 132, 538, 653, 760
TatI	WGTACW	1 cut(s)	161
TfiI	GAWTC	2 cut(s)	524, 565
Tru1I	TTAA	1 cut(s)	111
Tru9I	TTAA	1 cut(s)	111
TseI	GCWGC	1 cut(s)	64
TspDTI	ATGAA	3 cut(s)	17, 358, 663
XcmI	CCANNNNNNNNNTGG	2 cut(s)	214, 289
XmiI	GTMKAC	1 cut(s)	616
XspI	CTAG	1 cut(s)	515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.