Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0000871

Physical Location & Seq

Genomic Coordinates Reverse (-)

3823106 .. 3830598

Gene Structure 7493 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0054000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3228 bp

ATGGCTGCAAAACTTCTGCATTCTTTAGCTGATGACAACCCAGATTTGCAGAAGCAAATAGGATGCATGAATGGGATTTTCCAAATTTTCGATCGACACCAAGTCCTCACTGGTAGGAGGATTAGCCACCACAAGAGGCTTCCTCCAGGGAATTCACACTATAGCAATGGTGGCCTGGAAAGAGAGTCCAACAATCCATACCATCGGCAAGCAGTAACTGAAATAAATTCGAACAAAAATGTGAATGAGAAACAAAGACTCTCAACAGAGTCATCACGGGCCTCTTTCTCGTCGACTTGTTCATCTTCCTTATCATCACTGGAGTGTAACAGAACAGCACAACCAGGAACCTCTTCCTTTGACAGAATCATTTTTCCTGAAACTCCCCCAAGGGATCCAGTGACTAACCACTCAAGTACCTCCCCTAGATTTGGAAGGCAGTCCCTTGATCTCCGGGATGTGGTAAAGGACTCTATGCATAGGGAAGCAAGGGGACTATCACTGAAAACTACAACCAGAGATGAAGCAGCAGGTAATGCAGTGAAGCACAGAGACTCTCCAAGACCCTTGAAGCTGTCCAGACCAACAGATGGATCTAATGGAGTCAGGACCAATGAGAAGCAAAATATGCCTGCTGATCTCAAGGAGTCTCTTAGAGTTCTTGCTCAACTTCGAGAAGCTCCTTGGCATTATGAAGATAGAGATCATCCAAGATCAACATATGAATCAAAAGATAGTTTTTGGCATACAGTTCCAAAAGATGCTCCACGGTTTTCTTATGATGGGAGAGAGATGAATCGTTTATCCTTTGAATCAAGAGATACCTTCAGACCAACTCCAAAGCCAAAAGAGTTGCCGAGACTTTCACTGGATAGCAGAGAAGATTCAATGCGTGGTTCCCACTCTGACTCAAGATCAAATCATCTTTCAAAAGGGTTTCGGAATAGTGGCAGCTCCAATGGCAGGGATCCTAGTCTACCTCAGTCATCAGGAACTCAGAGTCGACCAAGTGTTGTAGCAAAGTTGATGGGTTTGGAAGCATTGCCAGATTCTGATAGTAACTTAAGTCTGATCAAAACCAGCCCAGTTATAGAAAGTGATCCTTTCTCAAAACCACTGAAGACAAACAATATATACAGGCCTATTCACACTTCAAACTCCCTGAGAAGCTCTCCAAAAGAACCAACATCACCAAGGTGGAAGAATCCAGATCTGGTTATGAGACCTGTTTCAAGTTCAAGGTTTCCAATTGAACCAGCACCTTGGAAAATGCAGGATGGAAATCGAGGTTATCAGAAACTATCTTCCAAACCTGTAAAAGCTCAAGGAAGGACCCAAAACTCCTTCCTGTCTGTTTATAGTGAGATAGAGAAGAGATTAAATGATCTGGAATTCAAACAGTCTGGAAAGGATCTTAGAGCTCTTAAACAGATATTGGAAGCAATGCAAGTAAAAGGGCTGTTAGAGACCAAAAAAGAAGAGCAAGCTTCAAATTTTGGAACTCAAAAGGACTGTGAACCAGAATGTTCTAGTTCCAATCCAGACCCAAGGTCTGTGAATCAAAGAAACAGAAACAGCCATGCTATGTCTTCCAGAATTAAAAGCTCTGATTCCTCGAAGAATTATGGTTCCCCGATTGTGATCATTAAACCTGCAAAGGTTGTCGAAAGGTCTGGTCTTCCTAGTTCATCACTAATTTCAATGGATGGCCTCTCTGATGTCCATACTGCTCCTAGAGGGGGAACAGTAGATAACAAGAGGGTTTCAACTAACAGCCGAATAGCTAAAGATCATTCTCCTAAGAACAGTAGGAAAGACTTTTCTGTTGGCTCCACTGACAAAAAGCCAAGTGGCAGGAATGTAAAATCTCTTCGAAAGGAAAACAGTGCAACAAATTCAGCAAAGAGCTCAGGATCTGTGAGCCCAAGATTACAGCAGAAGAAGCTTGAGTTAGGGAAGCCATCTCGTCCACCTACCCCGCCATCTGATACAAGAAAACCGAGAAGGCAATCCAGCAGGCAATCAACAGACTCAACTTCACCTGGTAGAAAACTCAGACCAAAATCTTCCAACTTGCAGCAAAGTGATGACCAGTTGAGTGAGATAAGTAATGAATCTAGACGGTCAAGTTTCCAAGGAGATGACATAGATATGGAAGAGTCTAGCAGTGTACGAGGTACTGATACAAATGATAGCCAGAGTCCATCTCTGAAGGCTTCCAAGTATTTAGCTTCTGCTTCAATGCAACAGAAGTTAACTGCAAGGTTGGAAGAAGATGGGTCTGCTGTGGAACTCGCTACAGTTGCTCCAGAACATCCTAGTCCTGTCTCTGTACTTGATGCCTCAGCATATAGAGATGATGCACTATCTCCAGTAAAGCAGTTGCCTGACGCCCTCAGAGGTGATGATGCTGAAGATTCAAATCTCAGAGTATGTGAAGATCAATGGAACCCTGCAGATAATCTTGCTAGCGTCGGGTCTGGTCTTACCTCAGAGATCAATCGTAAGAAATTGCAGAACATTGAGAACTTAGTTCAGAAGCTTAGACGATTGAACTCTAGTCATGATGAAGCAAGAACAGACTATATTGCATCACTATGCGAGAATTCAAATCCGGATCACAGATACATTTCTGAAATATTGTTAGCTTCAGGTCTCCTACTTAGAGACCTGGGGTCCAGCCTGACTACATTTCAGCTCCATCCCTCAGGTCACCCTATCAACCCTGAGTTGTTCTTTGTTTTGGAGCAAACCAAGGCTAGCAGTATGCTTGCAAAAGAAGAATGTATCCCCGAAAAGGCAACTCACGCAAAGCAAGAGAAGTTTCACCGGAAACTCATCTTCGATGCTGTCAATGAAATTCTTGTTGATAAGTTGGGCTTAGTTGGCAGCCCTCTTGAGCCGTGGTTGAAGCCTGCAAGACTGGCAAAGAAAACCCTCAATGCACAAAAGCTTCTCAAGGAACTGTTTTTCGAGATAGAACAATTTCAAGCCAAGAAACTTGTGTGTAACTTAGAGGATGAGGATGATGGTTTGAGAAGCATATTGTGTGAAGATGTGATGCACAGGTCAGAAAGTTGGACAGTTTTCCATGCTGAGATTTCTGGGTCAGTCTTAGATGTTGAGAGGTTGATCTTTAAGGATTTGATCGACGAAATTGTTATTGGTGAAGCAGCTAGCTTGCGTGCCAAGCCAGCAGCCAGGCGTCGAAAGCTGTTTGCTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0006810 GO:0006811 GO:0006820 GO:0006862 GO:0008150 GO:0008509 GO:0008514 GO:0012505 GO:0015075 GO:0015215 GO:0015216 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015868 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0022857 GO:0030173 GO:0030176 GO:0031090 GO:0031224 GO:0031227 GO:0031228 GO:0031300 GO:0031301 GO:0031984 GO:0034220 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046963 GO:0046964 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0071702 GO:0071705 GO:0072348 GO:0072530 GO:0098588 GO:0098656 GO:0098791 GO:0098827 GO:1901264 GO:1901505 GO:1901679 GO:1901682 GO:1902559

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UAA

Protein Analysis

1075

Amino Acids

119.75

Weight (kDa)

9.36

Isoelectric Point (pI)

60.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VARLMGL	PF14383	336 - 353	5.2e-06	DUF761-associated sequence motif
DUF4378	PF14309	873 - 1052	1.6e-34	Domain of unknown function (DUF4378)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000871)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12600 AT4G23010 AT4G23010 AT4G23010
fragaria_vesca	FvH4_5g01421 FvH4_5g01421 FvH4_7g12950 FvH4_7g12950 FvH4_7g12950
malus_domestica	MD02G1194900.v1.1 MD04G1068500.v1.1 MD07G1125700.v1.1
prunus_persica	Prupe.2G153800_v2.0.a1 Prupe.5G089700_v2.0.a1 Prupe.5G089700_v2.0.a1
pyrus_communis	pycom02g15880 pycom04g06180 pycom07g11930
rosa_chinensis	RchiOBHm_Chr0c16g0499921 RchiOBHm_Chr1g0347281 RchiOBHm_Chr1g0352081 RchiOBHm_Chr3g0455881 RchiOBHm_Chr4g0437881 RchiOBHm_Chr7g0199431
rosa_laevigata	RLG00000002748 RLG00000003793 RLG00000006404 RLG00000028361
rosa_multiflora	Rmu_sc0002453.1_g000013 Rmu_sc0002464.1_g000008 Rmu_sc0003781.1_g000011 Rmu_sc0008907.1_g000006 Rmu_sc0010560.1_g000004
rosa_roxburghii	Rroxscaffold_3G00256730 Rroxscaffold_4G00303280 Rroxscaffold_5G00361360
rosa_rugosa	Rorug01G0080000 Rorug01G0223900 Rorug01G0224000 Rorug01G0224100 Rorug02G0308800 Rorug02G0308900 Rorug02G0309000 Rorug02G0515400 Rorug04G0305100 Rorug06G0238700 Rorug06G0238800 Rorug06G0238900 Rorug06G0239000 Rorug07G0053800 Rorug07G0053900.1 Rorug07G0054000
rosa_samantha	Rh1CG222900 Rh4BG367900 Rh4CG154300 Rh4CG381900 Rh4DG362500 Rh6BG359000 Rh6DG293200 Rh7AG179000 Rh7CG187600 Rh7DG181900
rosa_wichuraiana	Rw0G011570 Rw1G020720 Rw5G045820 Rw7G015720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	521, 1660
AccB7I	CCANNNNNTGG	1 cut(s)	590
AccI	GTMKAC	3 cut(s)	293, 976, 1003
AccIII	TCCGGA	1 cut(s)	2614
AciI	CCGC	1 cut(s)	1979
AclWI	GGATC	9 cut(s)	389, 402, 601, 962, 975, 1094, 1419, 1921, 2625
AcsI	RAATTY	8 cut(s)	84, 151, 226, 1391, 1492, 1894, 2605, 2859
AcuI	CTGAAG	5 cut(s)	811, 1139, 2231, 2433, 2634
AcyI	GRCGYC	2 cut(s)	2391, 3205
AfaI	GTAC	4 cut(s)	418, 2172, 2179, 2334
AfiI	CCNNNNNNNGG	6 cut(s)	431, 460, 590, 963, 1739, 2797
AflII	CTTAAG	1 cut(s)	1063
AhdI	GACNNNNNGTC	3 cut(s)	101, 1549, 2674
AjnI	CCWGG	6 cut(s)	145, 174, 343, 2041, 2670, 3200
AjuI	GAANNNNNNNTTGG	2 cut(s)	3147, 3179
AleI	CACNNNNGTG	2 cut(s)	322, 1195
Alw21I	GWGCWC	2 cut(s)	1423, 1910
Alw26I	GTCTC	8 cut(s)	546, 654, 853, 1216, 1460, 2332, 2660, 2661
AlwI	GGATC	9 cut(s)	389, 402, 601, 962, 975, 1094, 1419, 1921, 2625
AlwNI	CAGNNNCTG	3 cut(s)	218, 1052, 1916
Aor13HI	TCCGGA	1 cut(s)	2614
AoxI	GGCC	4 cut(s)	172, 279, 1139, 1708
ApeKI	GCWGC	7 cut(s)	5, 527, 951, 2077, 2889, 3173, 3197
ApoI	RAATTY	8 cut(s)	84, 151, 226, 1391, 1492, 1894, 2605, 2859
Asp700I	GAANNNNTTC	2 cut(s)	352, 2985
AspS9I	GGNCC	4 cut(s)	279, 609, 1332, 2676
AsuC2I	CCSGG	1 cut(s)	455
AsuHPI	GGTGA	6 cut(s)	1182, 2031, 2414, 2705, 2819, 3179
AsuII	TTCGAA	2 cut(s)	230, 1873
AsuNHI	GCTAGC	3 cut(s)	2468, 2759, 3176
AvaII	GGWCC	3 cut(s)	609, 1332, 2676
AxyI	CCTNAGG	1 cut(s)	2707
BaeI	ACNNNNGTAYC	2 cut(s)	400, 433
BamHI	GGATCC	2 cut(s)	394, 967
BanII	GRGCYC	3 cut(s)	1423, 1910, 1925
BarI	GAAGNNNNNNTAC	2 cut(s)	1854, 1886
BbsI	GAAGAC	3 cut(s)	1127, 1581, 1670
Bbv12I	GWGCWC	2 cut(s)	1423, 1910
BbvCI	CCTCAGC	1 cut(s)	2344
BbvI	GCAGC	6 cut(s)	539, 963, 2089, 2901, 3185, 3209
BceAI	ACGGC	1 cut(s)	2887
BciT130I	CCWGG	6 cut(s)	147, 176, 345, 2043, 2672, 3202
BciVI	GTATCC	1 cut(s)	2798
BclI	TGATCA	2 cut(s)	1071, 1641
BcnI	CCSGG	1 cut(s)	455
BcoDI	GTCTC	8 cut(s)	546, 654, 853, 1216, 1460, 2332, 2660, 2661
BfmI	CTRYAG	3 cut(s)	160, 2298, 2454
BfrI	CTTAAG	1 cut(s)	1063
BfuAI	ACCTGC	2 cut(s)	521, 1660
BfuI	GTATCC	1 cut(s)	2798
BglII	AGATCT	1 cut(s)	1210
BisI	GCNGC	7 cut(s)	6, 528, 952, 2078, 2890, 3174, 3198
BlsI	GCNGC	7 cut(s)	7, 529, 953, 2079, 2891, 3175, 3199
Bme1390I	CCNGG	7 cut(s)	147, 176, 345, 455, 2043, 2672, 3202
Bme18I	GGWCC	3 cut(s)	609, 1332, 2676
BmeRI	GACNNNNNGTC	3 cut(s)	101, 1549, 2674
BmgT120I	GGNCC	4 cut(s)	279, 609, 1332, 2676
BmiI	GGNNCC	9 cut(s)	349, 396, 898, 969, 1334, 1630, 1831, 2450, 2677
BmrFI	CCNGG	7 cut(s)	147, 176, 345, 455, 2043, 2672, 3202
BmrI	ACTGGG	1 cut(s)	1079
BmsI	GCATC	8 cut(s)	53, 751, 2329, 2350, 2398, 2600, 2836, 3051
BmtI	GCTAGC	3 cut(s)	2472, 2763, 3180
BmuI	ACTGGG	1 cut(s)	1079
BpiI	GAAGAC	3 cut(s)	1127, 1581, 1670
BplI	GAGNNNNNCTC	6 cut(s)	127, 159, 1156, 1188, 2191, 2223
BpmI	CTGGAG	4 cut(s)	129, 341, 2292, 2355
Bpu10I	CCTNAGC	2 cut(s)	1909, 2344
Bpu14I	TTCGAA	2 cut(s)	230, 1873
BpuEI	CTTGAG	7 cut(s)	397, 626, 895, 1308, 1967, 2918, 2942
BpuMI	CCSGG	1 cut(s)	455
BsaBI	GATNNNNATC	4 cut(s)	702, 1281, 1640, 2421
BsaHI	GRCGYC	2 cut(s)	2391, 3205
BsaI	GGTCTC	4 cut(s)	1216, 1460, 2660, 2661
BsaWI	WCCGGW	2 cut(s)	2614, 2829
BsaXI	ACNNNNNCTCC	2 cut(s)	2290, 2320
Bsc4I	CCNNNNNNNGG	6 cut(s)	431, 460, 590, 963, 1739, 2797
Bse1I	ACTGG	8 cut(s)	115, 324, 398, 873, 1085, 2092, 2372, 2928
Bse21I	CCTNAGG	1 cut(s)	2707
Bse3DI	GCAATG	3 cut(s)	172, 1040, 1449
Bse8I	GATNNNNATC	4 cut(s)	702, 1281, 1640, 2421
BseAI	TCCGGA	1 cut(s)	2614
BseBI	CCWGG	6 cut(s)	147, 176, 345, 2043, 2672, 3202
BseGI	GGATG	9 cut(s)	68, 463, 706, 1282, 1711, 2314, 2701, 3025, 3031
BseJI	GATNNNNATC	4 cut(s)	702, 1281, 1640, 2421
BseLI	CCNNNNNNNGG	6 cut(s)	431, 460, 590, 963, 1739, 2797
BseMI	GCAATG	3 cut(s)	172, 1040, 1449
BseNI	ACTGG	8 cut(s)	115, 324, 398, 873, 1085, 2092, 2372, 2928
BseXI	GCAGC	6 cut(s)	539, 963, 2089, 2901, 3185, 3209
Bsh1285I	CGRYCG	1 cut(s)	94
BshFI	GGCC	4 cut(s)	174, 281, 1141, 1710
BsiEI	CGRYCG	1 cut(s)	94
BsiHKAI	GWGCWC	2 cut(s)	1423, 1910
BsiSI	CCGG	3 cut(s)	454, 2615, 2830
BslFI	GGGAC	2 cut(s)	427, 507
BslI	CCNNNNNNNGG	6 cut(s)	431, 460, 590, 963, 1739, 2797
BsmAI	GTCTC	8 cut(s)	546, 654, 853, 1216, 1460, 2332, 2660, 2661
BsmFI	GGGAC	2 cut(s)	427, 507
BsmI	GAATGC	1 cut(s)	19
BsnI	GGCC	4 cut(s)	174, 281, 1141, 1710
Bso31I	GGTCTC	4 cut(s)	1216, 1460, 2660, 2661
Bsp119I	TTCGAA	2 cut(s)	230, 1873
Bsp1286I	GDGCHC	3 cut(s)	1423, 1910, 1925
Bsp13I	TCCGGA	1 cut(s)	2614
BspACI	CCGC	1 cut(s)	1979
BspANI	GGCC	4 cut(s)	174, 281, 1141, 1710
BspEI	TCCGGA	1 cut(s)	2614
BspHI	TCATGA	1 cut(s)	2563
BspLI	GGNNCC	9 cut(s)	349, 396, 898, 969, 1334, 1630, 1831, 2450, 2677
BspMAI	CTGCAG	1 cut(s)	2458
BspMI	ACCTGC	2 cut(s)	521, 1660
BspOI	GCTAGC	3 cut(s)	2472, 2763, 3180
BspPI	GGATC	9 cut(s)	389, 402, 601, 962, 975, 1094, 1419, 1921, 2625
BspQI	GCTCTTC	1 cut(s)	1473
BspT104I	TTCGAA	2 cut(s)	230, 1873
BspTI	CTTAAG	1 cut(s)	1063
BspTNI	GGTCTC	4 cut(s)	1216, 1460, 2660, 2661
BsrDI	GCAATG	3 cut(s)	172, 1040, 1449
BsrI	ACTGG	8 cut(s)	115, 324, 398, 873, 1085, 2092, 2372, 2928
BssNI	GRCGYC	2 cut(s)	2391, 3205
BssT1I	CCWWGG	7 cut(s)	389, 683, 1193, 1262, 1547, 2134, 2754
Bst2UI	CCWGG	6 cut(s)	147, 176, 345, 2043, 2672, 3202
Bst6I	CTCTTC	5 cut(s)	358, 1367, 1473, 1875, 2151
BstACI	GRCGYC	2 cut(s)	2391, 3205
BstAFI	CTTAAG	1 cut(s)	1063
BstAPI	GCANNNNNTGC	2 cut(s)	536, 628
BstBI	TTCGAA	2 cut(s)	230, 1873
BstDSI	CCRYGG	2 cut(s)	767, 2903
BstEII	GGTNACC	1 cut(s)	2711
BstF5I	GGATG	9 cut(s)	68, 463, 706, 1282, 1711, 2314, 2701, 3025, 3031
BstMAI	GTCTC	8 cut(s)	546, 654, 853, 1216, 1460, 2332, 2660, 2661
BstMCI	CGRYCG	1 cut(s)	94
BstNI	CCWGG	6 cut(s)	147, 176, 345, 2043, 2672, 3202
BstPI	GGTNACC	1 cut(s)	2711
BstSCI	CCNGG	7 cut(s)	145, 174, 343, 453, 2041, 2670, 3200
BstSFI	CTRYAG	3 cut(s)	160, 2298, 2454
BstV1I	GCAGC	6 cut(s)	539, 963, 2089, 2901, 3185, 3209
BstV2I	GAAGAC	3 cut(s)	1127, 1581, 1670
BstX2I	RGATCY	6 cut(s)	394, 593, 967, 1210, 1411, 1913
BstXI	CCANNNNNNTGG	1 cut(s)	1263
BstYI	RGATCY	6 cut(s)	394, 593, 967, 1210, 1411, 1913
Bsu36I	CCTNAGG	1 cut(s)	2707
BsuI	GTATCC	1 cut(s)	2798
BsuRI	GGCC	4 cut(s)	174, 281, 1141, 1710
BtgI	CCRYGG	2 cut(s)	767, 2903
BtsCI	GGATG	9 cut(s)	68, 463, 706, 1282, 1711, 2314, 2701, 3025, 3031
BtsI	GCAGTG	2 cut(s)	546, 2173
BveI	ACCTGC	2 cut(s)	521, 1660
CaiI	CAGNNNCTG	3 cut(s)	218, 1052, 1916
CciI	TCATGA	1 cut(s)	2563
Cfr13I	GGNCC	4 cut(s)	279, 609, 1332, 2676
CseI	GACGC	3 cut(s)	2399, 2461, 3194
CsiI	ACCWGGT	1 cut(s)	2041
Csp6I	GTAC	4 cut(s)	417, 2171, 2178, 2333
CviAII	CATG	4 cut(s)	67, 1580, 2564, 3092
CviQI	GTAC	4 cut(s)	417, 2171, 2178, 2333
DriI	GACNNNNNGTC	3 cut(s)	101, 1549, 2674
Eam1104I	CTCTTC	5 cut(s)	358, 1367, 1473, 1875, 2151
Eam1105I	GACNNNNNGTC	3 cut(s)	101, 1549, 2674
EarI	CTCTTC	5 cut(s)	358, 1367, 1473, 1875, 2151
Ecl136II	GAGCTC	2 cut(s)	1421, 1908
Eco130I	CCWWGG	7 cut(s)	389, 683, 1193, 1262, 1547, 2134, 2754
Eco147I	AGGCCT	1 cut(s)	1141
Eco24I	GRGCYC	3 cut(s)	1423, 1910, 1925
Eco31I	GGTCTC	4 cut(s)	1216, 1460, 2660, 2661
Eco47I	GGWCC	3 cut(s)	609, 1332, 2676
Eco53kI	GAGCTC	2 cut(s)	1421, 1908
Eco57I	CTGAAG	5 cut(s)	811, 1139, 2231, 2433, 2634
Eco81I	CCTNAGG	1 cut(s)	2707
Eco91I	GGTNACC	1 cut(s)	2711
EcoICRI	GAGCTC	2 cut(s)	1421, 1908
EcoO109I	RGGNCCY	1 cut(s)	1332
EcoO65I	GGTNACC	1 cut(s)	2711
EcoRI	GAATTC	3 cut(s)	151, 1391, 2605
EcoRII	CCWGG	6 cut(s)	145, 174, 343, 2041, 2670, 3200
EcoT14I	CCWWGG	7 cut(s)	389, 683, 1193, 1262, 1547, 2134, 2754
EcoT22I	ATGCAT	2 cut(s)	68, 480
EcoT38I	GRGCYC	3 cut(s)	1423, 1910, 1925
ErhI	CCWWGG	7 cut(s)	389, 683, 1193, 1262, 1547, 2134, 2754
FaeI	CATG	4 cut(s)	70, 1583, 2567, 3095
FalI	AAGNNNNNCTT	4 cut(s)	1087, 1119, 2864, 2896
FaqI	GGGAC	2 cut(s)	427, 507
FatI	CATG	4 cut(s)	66, 1579, 2563, 3091
FauI	CCCGC	1 cut(s)	1986
FauNDI	CATATG	1 cut(s)	721
FbaI	TGATCA	2 cut(s)	1071, 1641
FblI	GTMKAC	3 cut(s)	293, 976, 1003
Fnu4HI	GCNGC	7 cut(s)	6, 528, 952, 2078, 2890, 3174, 3198
FokI	GGATG	9 cut(s)	75, 470, 693, 1289, 1718, 2301, 2688, 3032, 3038
FriOI	GRGCYC	3 cut(s)	1423, 1910, 1925
Fsp4HI	GCNGC	7 cut(s)	6, 528, 952, 2078, 2890, 3174, 3198
GluI	GCNGC	7 cut(s)	6, 528, 952, 2078, 2890, 3174, 3198
GsuI	CTGGAG	4 cut(s)	129, 341, 2292, 2355
HaeIII	GGCC	4 cut(s)	174, 281, 1141, 1710
HapII	CCGG	3 cut(s)	454, 2615, 2830
HgaI	GACGC	3 cut(s)	2399, 2461, 3194
Hin1I	GRCGYC	2 cut(s)	2391, 3205
Hin1II	CATG	4 cut(s)	70, 1583, 2567, 3095
HincII	GTYRAC	3 cut(s)	294, 1004, 2256
HindII	GTYRAC	3 cut(s)	294, 1004, 2256
HindIII	AAGCTT	4 cut(s)	1485, 1943, 2540, 2951
HpaI	GTTAAC	1 cut(s)	2256
HpaII	CCGG	3 cut(s)	454, 2615, 2830
HphI	GGTGA	6 cut(s)	1182, 2031, 2414, 2705, 2819, 3179
Hpy166II	GTNNAC	7 cut(s)	294, 977, 1004, 1517, 1970, 2171, 2256
Hpy8I	GTNNAC	7 cut(s)	294, 977, 1004, 1517, 1970, 2171, 2256
Hpy99I	CGWCG	4 cut(s)	295, 2477, 3155, 3210
HpyAV	CCTTC	6 cut(s)	429, 835, 1323, 1354, 1998, 2206
Hsp92I	GRCGYC	2 cut(s)	2391, 3205
Hsp92II	CATG	4 cut(s)	70, 1583, 2567, 3095
Kpn2I	TCCGGA	1 cut(s)	2614
Ksp22I	TGATCA	2 cut(s)	1071, 1641
KspAI	GTTAAC	1 cut(s)	2256
LguI	GCTCTTC	1 cut(s)	1473
LmnI	GCTCC	8 cut(s)	685, 769, 959, 1735, 1835, 2311, 2703, 2746
Lsp1109I	GCAGC	6 cut(s)	539, 963, 2089, 2901, 3185, 3209
LweI	GCATC	8 cut(s)	53, 751, 2329, 2350, 2398, 2600, 2836, 3051
MabI	ACCWGGT	1 cut(s)	2041
MaeIII	GTNAC	6 cut(s)	214, 326, 400, 1058, 2711, 3008
MfeI	CAATTG	1 cut(s)	1248
MflI	RGATCY	6 cut(s)	394, 593, 967, 1210, 1411, 1913
MhlI	GDGCHC	3 cut(s)	1423, 1910, 1925
MmeI	TCCRAC	4 cut(s)	213, 2094, 2247, 3059
Mph1103I	ATGCAT	2 cut(s)	68, 480
MroI	TCCGGA	1 cut(s)	2614
MroXI	GAANNNNTTC	2 cut(s)	352, 2985
MseI	TTAA	8 cut(s)	1064, 1379, 1425, 1599, 1647, 2255, 3138, 3226
MslI	CAYNNNNRTG	4 cut(s)	322, 1195, 2150, 2596
MspCI	CTTAAG	1 cut(s)	1063
MspI	CCGG	3 cut(s)	454, 2615, 2830
MspR9I	CCNGG	7 cut(s)	147, 176, 345, 455, 2043, 2672, 3202
MunI	CAATTG	1 cut(s)	1248
Mva1269I	GAATGC	1 cut(s)	19
MvaI	CCWGG	6 cut(s)	147, 176, 345, 2043, 2672, 3202
NciI	CCSGG	1 cut(s)	455
NdeI	CATATG	1 cut(s)	721
NheI	GCTAGC	3 cut(s)	2468, 2759, 3176
NlaIII	CATG	4 cut(s)	70, 1583, 2567, 3095
NlaIV	GGNNCC	9 cut(s)	349, 396, 898, 969, 1334, 1630, 1831, 2450, 2677
NmeAIII	GCCGAG	1 cut(s)	882
NmuCI	GTSAC	2 cut(s)	400, 2711
NsiI	ATGCAT	2 cut(s)	68, 480
NspV	TTCGAA	2 cut(s)	230, 1873
OliI	CACNNNNGTG	2 cut(s)	322, 1195
PagI	TCATGA	1 cut(s)	2563
PceI	AGGCCT	1 cut(s)	1141
PciSI	GCTCTTC	1 cut(s)	1473
PctI	GAATGC	1 cut(s)	19
PdmI	GAANNNNTTC	2 cut(s)	352, 2985
PflMI	CCANNNNNTGG	1 cut(s)	590
PfoI	TCCNGGA	1 cut(s)	453
PkrI	GCNGC	7 cut(s)	7, 529, 953, 2079, 2891, 3175, 3199
Ple19I	CGATCG	1 cut(s)	94
PpuMI	RGGWCCY	1 cut(s)	1332
Psp124BI	GAGCTC	2 cut(s)	1423, 1910
Psp5II	RGGWCCY	1 cut(s)	1332
Psp6I	CCWGG	6 cut(s)	145, 174, 343, 2041, 2670, 3200
PspEI	GGTNACC	1 cut(s)	2711
PspGI	CCWGG	6 cut(s)	145, 174, 343, 2041, 2670, 3200
PspN4I	GGNNCC	9 cut(s)	349, 396, 898, 969, 1334, 1630, 1831, 2450, 2677
PspPI	GGNCC	4 cut(s)	279, 609, 1332, 2676
PspPPI	RGGWCCY	1 cut(s)	1332
PstI	CTGCAG	1 cut(s)	2458
PstNI	CAGNNNCTG	3 cut(s)	218, 1052, 1916
PsuI	RGATCY	6 cut(s)	394, 593, 967, 1210, 1411, 1913
PvuI	CGATCG	1 cut(s)	94
RsaI	GTAC	4 cut(s)	418, 2172, 2179, 2334
RsaNI	GTAC	4 cut(s)	417, 2171, 2178, 2333
RseI	CAYNNNNRTG	4 cut(s)	322, 1195, 2150, 2596
SacI	GAGCTC	2 cut(s)	1423, 1910
SalI	GTCGAC	2 cut(s)	292, 1002
SapI	GCTCTTC	1 cut(s)	1473
SaqAI	TTAA	8 cut(s)	1064, 1379, 1425, 1599, 1647, 2255, 3138, 3226
SatI	GCNGC	7 cut(s)	6, 528, 952, 2078, 2890, 3174, 3198
Sau96I	GGNCC	4 cut(s)	279, 609, 1332, 2676
ScrFI	CCNGG	7 cut(s)	147, 176, 345, 455, 2043, 2672, 3202
SduI	GDGCHC	3 cut(s)	1423, 1910, 1925
SexAI	ACCWGGT	1 cut(s)	2041
SfaNI	GCATC	8 cut(s)	53, 751, 2329, 2350, 2398, 2600, 2836, 3051
SfcI	CTRYAG	3 cut(s)	160, 2298, 2454
SfuI	TTCGAA	2 cut(s)	230, 1873
SinI	GGWCC	3 cut(s)	609, 1332, 2676
SmiMI	CAYNNNNRTG	4 cut(s)	322, 1195, 2150, 2596
SmlI	CTYRAG	8 cut(s)	412, 641, 910, 1063, 1323, 1946, 2897, 2957
SmoI	CTYRAG	8 cut(s)	412, 641, 910, 1063, 1323, 1946, 2897, 2957
SseBI	AGGCCT	1 cut(s)	1141
SsiI	CCGC	1 cut(s)	1979
SspI	AATATT	1 cut(s)	2640
SstI	GAGCTC	2 cut(s)	1423, 1910
StuI	AGGCCT	1 cut(s)	1141
StyD4I	CCNGG	7 cut(s)	145, 174, 343, 453, 2041, 2670, 3200
StyI	CCWWGG	7 cut(s)	389, 683, 1193, 1262, 1547, 2134, 2754
TatI	WGTACW	1 cut(s)	2332
Tru1I	TTAA	8 cut(s)	1064, 1379, 1425, 1599, 1647, 2255, 3138, 3226
Tru9I	TTAA	8 cut(s)	1064, 1379, 1425, 1599, 1647, 2255, 3138, 3226
TseFI	GTSAC	2 cut(s)	400, 2711
TseI	GCWGC	7 cut(s)	5, 527, 951, 2077, 2889, 3173, 3197
Tsp45I	GTSAC	2 cut(s)	400, 2711
Van91I	CCANNNNNTGG	1 cut(s)	590
Vha464I	CTTAAG	1 cut(s)	1063
VpaK11BI	GGWCC	3 cut(s)	609, 1332, 2676
XapI	RAATTY	8 cut(s)	84, 151, 226, 1391, 1492, 1894, 2605, 2859
XbaI	TCTAGA	1 cut(s)	2117
XcmI	CCANNNNNNNNNTGG	1 cut(s)	107
XmiI	GTMKAC	3 cut(s)	293, 976, 1003
XmnI	GAANNNNTTC	2 cut(s)	352, 2985
Zsp2I	ATGCAT	2 cut(s)	68, 480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.