Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0000871

Physical Location & Seq

Genomic Coordinates Reverse (-)

49261203 .. 49266187

Gene Structure 4985 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG293200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGACCTTTGTAATTGTCTCTTTGACTGGATGGGGTGCACTTATCTTTAGTGGATACAAGTTTTTCACCGGAGGCAAAGGCAAGAAGGAAGAGGTGAAAAGGTGTCCATTTGTGTATGAAAAGGTGTTGAAGACGATGAAGAACGAAGAACAAGCTCGGTTTCTGTTTGGGATTTCGCTCTCTGATAGACCCAAATGGCAGCAATTCCTGCTTTGCTCTTCTGGGTTCTTCTTTGGTTATCTGGTTAATGGTGTCTGTGAGGAATACGTGTATAACAGGCTACAATTCAGGATTTATGTATCTATTTCTGATTATCTTCAAGGCTTTACCACCAAGCAAATGGTAAACCCATGGAAGACTTATGTGAAGCTATCTGCTGTGCTTATGGGCTCTCATGGACTTACCAAAGGCTCCTTGGCTTTTCTCAACTACCCTGCACAGCTAATGTTCAAATCAACAAAGGTTTTGCCTGTGATGATAATGGGAGCCTTCATACCAGGTTTGAGGCGGAAGTACCCACCTCATGAGTACGTTTCTGCAATCCTTCTGGTGGTGGGTCTGATCCTATTCACCTTAGCGGATGCACAAACGTCTCCCAACTTCAGCGTGATTGGTGTGGTGATGGTATCGGGTGCTCTAGTCATGGATTCGTTTTTGGGTAATTTGCAAGAAGCAATATTTACCATGAATCCTGAAACCACACAGATGGAGATGTTGTTTTGCTCTACAGTAGTTGGTCTACCTTTCTTGGTGCCACCAATGATTTTGACAGGAGAATTATTCAAAGCGTGGAGTTCATGTTCTCAGCATCCATACGTATATGGTGTGTTAGTCTTTGAAGCCATGGCCACCTTTATTGGCCAAGTTTCTGTCCTTTCCCTCAATTATCTTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0006810 GO:0006811 GO:0006820 GO:0006862 GO:0008150 GO:0008509 GO:0008514 GO:0012505 GO:0015075 GO:0015215 GO:0015216 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015868 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0022857 GO:0030173 GO:0030176 GO:0031090 GO:0031224 GO:0031227 GO:0031228 GO:0031300 GO:0031301 GO:0031984 GO:0034220 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046963 GO:0046964 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0071702 GO:0071705 GO:0072348 GO:0072530 GO:0098588 GO:0098656 GO:0098791 GO:0098827 GO:1901264 GO:1901505 GO:1901679 GO:1901682 GO:1902559

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UAA

Protein Analysis

298

Amino Acids

33.4

Weight (kDa)

9.07

Isoelectric Point (pI)

27.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UAA	PF08449	68 - 294	6.4e-54	UAA transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000871)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12600 AT4G23010 AT4G23010 AT4G23010
fragaria_vesca	FvH4_5g01421 FvH4_5g01421 FvH4_7g12950 FvH4_7g12950 FvH4_7g12950
malus_domestica	MD02G1194900.v1.1 MD04G1068500.v1.1 MD07G1125700.v1.1
prunus_persica	Prupe.2G153800_v2.0.a1 Prupe.5G089700_v2.0.a1 Prupe.5G089700_v2.0.a1
pyrus_communis	pycom02g15880 pycom04g06180 pycom07g11930
rosa_chinensis	RchiOBHm_Chr0c16g0499921 RchiOBHm_Chr1g0347281 RchiOBHm_Chr1g0352081 RchiOBHm_Chr3g0455881 RchiOBHm_Chr4g0437881 RchiOBHm_Chr7g0199431
rosa_laevigata	RLG00000002748 RLG00000003793 RLG00000006404 RLG00000028361
rosa_multiflora	Rmu_sc0002453.1_g000013 Rmu_sc0002464.1_g000008 Rmu_sc0003781.1_g000011 Rmu_sc0008907.1_g000006 Rmu_sc0010560.1_g000004
rosa_roxburghii	Rroxscaffold_3G00256730 Rroxscaffold_4G00303280 Rroxscaffold_5G00361360
rosa_rugosa	Rorug01G0080000 Rorug01G0223900 Rorug01G0224000 Rorug01G0224100 Rorug02G0308800 Rorug02G0308900 Rorug02G0309000 Rorug02G0515400 Rorug04G0305100 Rorug06G0238700 Rorug06G0238800 Rorug06G0238900 Rorug06G0239000 Rorug07G0053800 Rorug07G0053900.1 Rorug07G0054000
rosa_samantha	Rh1CG222900 Rh4BG367900 Rh4CG154300 Rh4CG381900 Rh4DG362500 Rh6BG359000 Rh6DG293200 Rh7AG179000 Rh7CG187600 Rh7DG181900
rosa_wichuraiana	Rw0G011570 Rw1G020720 Rw5G045820 Rw7G015720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	751
AccI	GTMKAC	1 cut(s)	739
AciI	CCGC	2 cut(s)	508, 578
AclWI	GGATC	1 cut(s)	556
AcoI	YGGCCR	2 cut(s)	846, 859
AcuI	CTGAAG	1 cut(s)	586
AfaI	GTAC	2 cut(s)	515, 530
AfiI	CCNNNNNNNGG	1 cut(s)	550
AflIII	ACRYGT	1 cut(s)	267
AgsI	TTSAA	5 cut(s)	130, 320, 451, 784, 839
AjnI	CCWGG	1 cut(s)	496
AloI	GAACNNNNNNTCC	2 cut(s)	784, 816
AluBI	AGCT	3 cut(s)	155, 370, 442
AluI	AGCT	3 cut(s)	155, 370, 442
Alw21I	GWGCWC	2 cut(s)	40, 637
Alw26I	GTCTC	2 cut(s)	22, 597
Alw44I	GTGCAC	1 cut(s)	36
AlwI	GGATC	1 cut(s)	556
AoxI	GGCC	2 cut(s)	846, 859
ApaLI	GTGCAC	1 cut(s)	36
ApeKI	GCWGC	1 cut(s)	199
AsuHPI	GGTGA	4 cut(s)	58, 106, 562, 631
BaeGI	GKGCMC	1 cut(s)	40
BalI	TGGCCA	2 cut(s)	848, 861
BanI	GGYRCC	1 cut(s)	751
BanII	GRGCYC	1 cut(s)	392
BbsI	GAAGAC	2 cut(s)	137, 362
Bbv12I	GWGCWC	2 cut(s)	40, 637
BbvI	GCAGC	1 cut(s)	211
BccI	CCATC	3 cut(s)	24, 616, 700
BciT130I	CCWGG	1 cut(s)	498
BciVI	GTATCC	1 cut(s)	47
BcoDI	GTCTC	2 cut(s)	22, 597
BfaI	CTAG	1 cut(s)	638
BfmI	CTRYAG	1 cut(s)	726
BfuI	GTATCC	1 cut(s)	47
BisI	GCNGC	1 cut(s)	200
BlsI	GCNGC	1 cut(s)	201
Bme1390I	CCNGG	1 cut(s)	498
BmiI	GGNNCC	3 cut(s)	412, 487, 753
BmrFI	CCNGG	1 cut(s)	498
BmsI	GCATC	2 cut(s)	571, 817
BpiI	GAAGAC	2 cut(s)	137, 362
Bpu10I	CCTNAGC	1 cut(s)	574
BsaAI	YACGTR	2 cut(s)	268, 817
BsaJI	CCNNGG	3 cut(s)	350, 414, 843
BsaWI	WCCGGW	1 cut(s)	68
BsaXI	ACNNNNNCTCC	4 cut(s)	701, 731, 784, 814
Bsc4I	CCNNNNNNNGG	1 cut(s)	550
Bse1I	ACTGG	1 cut(s)	31
BseBI	CCWGG	1 cut(s)	498
BseDI	CCNNGG	3 cut(s)	350, 414, 843
BseGI	GGATG	3 cut(s)	35, 586, 808
BseLI	CCNNNNNNNGG	1 cut(s)	550
BseMII	CTCAG	1 cut(s)	818
BseNI	ACTGG	1 cut(s)	31
BseSI	GKGCMC	1 cut(s)	40
BseXI	GCAGC	1 cut(s)	211
BsgI	GTGCAG	1 cut(s)	420
BshFI	GGCC	2 cut(s)	848, 861
BshNI	GGYRCC	1 cut(s)	751
BsiHKAI	GWGCWC	2 cut(s)	40, 637
BsiSI	CCGG	1 cut(s)	69
BslI	CCNNNNNNNGG	1 cut(s)	550
BsmAI	GTCTC	2 cut(s)	22, 597
BsmBI	CGTCTC	1 cut(s)	597
BsnI	GGCC	2 cut(s)	848, 861
Bsp1286I	GDGCHC	3 cut(s)	40, 392, 637
Bsp143I	GATC	1 cut(s)	561
Bsp19I	CCATGG	2 cut(s)	350, 843
BspACI	CCGC	2 cut(s)	508, 578
BspANI	GGCC	2 cut(s)	848, 861
BspCNI	CTCAG	1 cut(s)	817
BspHI	TCATGA	1 cut(s)	523
BspLI	GGNNCC	3 cut(s)	412, 487, 753
BspPI	GGATC	1 cut(s)	556
BspQI	GCTCTTC	1 cut(s)	223
BspT107I	GGYRCC	1 cut(s)	751
BsrI	ACTGG	1 cut(s)	31
BssECI	CCNNGG	3 cut(s)	350, 414, 843
BssMI	GATC	1 cut(s)	561
BssT1I	CCWWGG	3 cut(s)	350, 414, 843
Bst2UI	CCWGG	1 cut(s)	498
Bst4CI	ACNGT	1 cut(s)	730
Bst6I	CTCTTC	2 cut(s)	84, 223
BstAPI	GCANNNNNTGC	1 cut(s)	208
BstBAI	YACGTR	2 cut(s)	268, 817
BstDEI	CTNAG	2 cut(s)	574, 804
BstDSI	CCRYGG	2 cut(s)	350, 843
BstF5I	GGATG	3 cut(s)	35, 586, 808
BstKTI	GATC	1 cut(s)	564
BstMAI	GTCTC	2 cut(s)	22, 597
BstMBI	GATC	1 cut(s)	561
BstMWI	GCNNNNNNNGC	1 cut(s)	208
BstNI	CCWGG	1 cut(s)	498
BstSCI	CCNGG	1 cut(s)	496
BstSFI	CTRYAG	1 cut(s)	726
BstSLI	GKGCMC	1 cut(s)	40
BstSNI	TACGTA	1 cut(s)	817
BstV1I	GCAGC	1 cut(s)	211
BstV2I	GAAGAC	2 cut(s)	137, 362
BstXI	CCANNNNNNTGG	2 cut(s)	340, 706
BsuI	GTATCC	1 cut(s)	47
BsuRI	GGCC	2 cut(s)	848, 861
BtgI	CCRYGG	2 cut(s)	350, 843
BtsCI	GGATG	3 cut(s)	35, 586, 808
CciI	TCATGA	1 cut(s)	523
CsiI	ACCWGGT	1 cut(s)	496
Csp6I	GTAC	2 cut(s)	514, 529
CspCI	CAANNNNNGTGG	2 cut(s)	838, 873
CviAII	CATG	7 cut(s)	351, 395, 524, 643, 685, 798, 844
CviQI	GTAC	2 cut(s)	514, 529
DdeI	CTNAG	2 cut(s)	574, 804
DpnI	GATC	1 cut(s)	563
DpnII	GATC	1 cut(s)	561
EaeI	YGGCCR	2 cut(s)	846, 859
Eam1104I	CTCTTC	2 cut(s)	84, 223
EarI	CTCTTC	2 cut(s)	84, 223
EciI	GGCGGA	1 cut(s)	523
Eco105I	TACGTA	1 cut(s)	817
Eco130I	CCWWGG	3 cut(s)	350, 414, 843
Eco24I	GRGCYC	1 cut(s)	392
Eco57I	CTGAAG	1 cut(s)	586
EcoRII	CCWGG	1 cut(s)	496
EcoT14I	CCWWGG	3 cut(s)	350, 414, 843
EcoT38I	GRGCYC	1 cut(s)	392
ErhI	CCWWGG	3 cut(s)	350, 414, 843
Esp3I	CGTCTC	1 cut(s)	597
FaeI	CATG	7 cut(s)	354, 398, 527, 646, 688, 801, 847
FatI	CATG	7 cut(s)	350, 394, 523, 642, 684, 797, 843
FblI	GTMKAC	1 cut(s)	739
Fnu4HI	GCNGC	1 cut(s)	200
FokI	GGATG	3 cut(s)	42, 593, 795
FriOI	GRGCYC	1 cut(s)	392
Fsp4HI	GCNGC	1 cut(s)	200
FspBI	CTAG	1 cut(s)	638
GluI	GCNGC	1 cut(s)	200
HaeIII	GGCC	2 cut(s)	848, 861
HapII	CCGG	1 cut(s)	69
Hin1II	CATG	7 cut(s)	354, 398, 527, 646, 688, 801, 847
HinfI	GANTC	2 cut(s)	647, 688
HpaII	CCGG	1 cut(s)	69
HphI	GGTGA	4 cut(s)	58, 106, 562, 631
Hpy166II	GTNNAC	3 cut(s)	38, 346, 740
Hpy188I	TCNGA	3 cut(s)	184, 310, 561
Hpy188III	TCNNGA	4 cut(s)	289, 524, 692, 894
Hpy8I	GTNNAC	3 cut(s)	38, 346, 740
HpyAV	CCTTC	3 cut(s)	79, 499, 554
HpyCH4III	ACNGT	1 cut(s)	730
HpyCH4IV	ACGT	4 cut(s)	267, 531, 590, 816
HpyCH4V	TGCA	5 cut(s)	38, 437, 539, 584, 667
HpyF10VI	GCNNNNNNNGC	1 cut(s)	208
HpyF3I	CTNAG	2 cut(s)	574, 804
HpySE526I	ACGT	4 cut(s)	267, 531, 590, 816
Hsp92II	CATG	7 cut(s)	354, 398, 527, 646, 688, 801, 847
Kzo9I	GATC	1 cut(s)	561
LguI	GCTCTTC	1 cut(s)	223
LmnI	GCTCC	2 cut(s)	416, 485
Lsp1109I	GCAGC	1 cut(s)	211
LweI	GCATC	2 cut(s)	571, 817
MabI	ACCWGGT	1 cut(s)	496
MaeI	CTAG	1 cut(s)	638
MaeII	ACGT	4 cut(s)	267, 531, 590, 816
MalI	GATC	1 cut(s)	563
MboI	GATC	1 cut(s)	561
MboII	GAAGA	8 cut(s)	101, 142, 151, 158, 210, 220, 308, 367
MhlI	GDGCHC	3 cut(s)	40, 392, 637
MlsI	TGGCCA	2 cut(s)	848, 861
MluCI	AATT	6 cut(s)	12, 203, 284, 661, 776, 883
MluNI	TGGCCA	2 cut(s)	848, 861
MnlI	CCTC	6 cut(s)	65, 85, 253, 498, 531, 890
Mox20I	TGGCCA	2 cut(s)	848, 861
MscI	TGGCCA	2 cut(s)	848, 861
MseI	TTAA	1 cut(s)	246
MslI	CAYNNNNRTG	1 cut(s)	704
Msp20I	TGGCCA	2 cut(s)	848, 861
MspI	CCGG	1 cut(s)	69
MspR9I	CCNGG	1 cut(s)	498
MvaI	CCWGG	1 cut(s)	498
MwoI	GCNNNNNNNGC	1 cut(s)	208
NcoI	CCATGG	2 cut(s)	350, 843
NdeII	GATC	1 cut(s)	561
NlaIII	CATG	7 cut(s)	354, 398, 527, 646, 688, 801, 847
NlaIV	GGNNCC	3 cut(s)	412, 487, 753
PagI	TCATGA	1 cut(s)	523
PciSI	GCTCTTC	1 cut(s)	223
PfeI	GAWTC	2 cut(s)	647, 688
PkrI	GCNGC	1 cut(s)	201
Ppu21I	YACGTR	2 cut(s)	268, 817
Psp6I	CCWGG	1 cut(s)	496
PspGI	CCWGG	1 cut(s)	496
PspN4I	GGNNCC	3 cut(s)	412, 487, 753
RsaI	GTAC	2 cut(s)	515, 530
RsaNI	GTAC	2 cut(s)	514, 529
RseI	CAYNNNNRTG	1 cut(s)	704
SapI	GCTCTTC	1 cut(s)	223
SaqAI	TTAA	1 cut(s)	246
SatI	GCNGC	1 cut(s)	200
Sau3AI	GATC	1 cut(s)	561
ScrFI	CCNGG	1 cut(s)	498
SduI	GDGCHC	3 cut(s)	40, 392, 637
SexAI	ACCWGGT	1 cut(s)	496
SfaNI	GCATC	2 cut(s)	571, 817
SfcI	CTRYAG	1 cut(s)	726
SmiMI	CAYNNNNRTG	1 cut(s)	704
SnaBI	TACGTA	1 cut(s)	817
Sse9I	AATT	6 cut(s)	12, 203, 284, 661, 776, 883
SsiI	CCGC	2 cut(s)	508, 578
SspI	AATATT	1 cut(s)	678
SspMI	CTAG	1 cut(s)	638
StyD4I	CCNGG	1 cut(s)	496
StyI	CCWWGG	3 cut(s)	350, 414, 843
TaaI	ACNGT	1 cut(s)	730
TaiI	ACGT	4 cut(s)	270, 534, 593, 819
TasI	AATT	6 cut(s)	12, 203, 284, 661, 776, 883
TfiI	GAWTC	2 cut(s)	647, 688
Tru1I	TTAA	1 cut(s)	246
Tru9I	TTAA	1 cut(s)	246
TseI	GCWGC	1 cut(s)	199
TspDTI	ATGAA	5 cut(s)	132, 152, 481, 701, 786
VneI	GTGCAC	1 cut(s)	36
XcmI	CCANNNNNNNNNTGG	2 cut(s)	337, 412
XmiI	GTMKAC	1 cut(s)	739
XspI	CTAG	1 cut(s)	638

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.