Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000871

Physical Location & Seq

Genomic Coordinates Forward (+)

35356486 .. 35358845

Gene Structure 2360 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0309000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGTAAGGCCATATGCGGTGAAGAGAAAGAAACGAAAGAGGAGGGAAGACAAGTATGACAGAGATGAAGAAGAAGAAGAAGAAGCAGAAGCAGAACAAGTAGCGATGATAACACCAATTAATAAAGACGGGAGGCTACGATGTGTGTATGTGAAGATGGAGGATGATAAACTTATTGAGATTAAGCCATATGTTCGTATCCCAAGGACATTTAAGCAGTTCTCTGGTGTCATGCTGCAGCTGCTACAAACACTGAGTATATCTGCTGCTGGTAAGTGTGAAAAACTTATGCGTATGATCAAGAACCCTGTGACCCAGTCAGTGCAAATGGCTCATGGTGAAGTTGAGACAGACTATACTGGTGATTTTGTATCAATATGTAGTTATCCATTGAGCAGCTGCGTACTGTATCACAATGATTTGCCAGGCATTGGCGGGAAAGTGGAACATATTGTGATATGTAATACTGATTTTAGTGAAAATCAGTGGTTAAACACTCGTGGCACAGGTTTGGCTCATAAGGGGAATACTGGGTCCAAGTTCTTTGTATCTAGATTTAAGGCTATGGGCTATTGGACCAAAAGTGAAACGGGGGAAGTGAAAGGATCTGAAATAGGTCTGGAAGCAACAGCATTAATACGGATTACAGGGCGAATTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0006810 GO:0006811 GO:0006820 GO:0006862 GO:0008150 GO:0008509 GO:0008514 GO:0012505 GO:0015075 GO:0015215 GO:0015216 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015868 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0022857 GO:0030173 GO:0030176 GO:0031090 GO:0031224 GO:0031227 GO:0031228 GO:0031300 GO:0031301 GO:0031984 GO:0034220 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046963 GO:0046964 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0071702 GO:0071705 GO:0072348 GO:0072530 GO:0098588 GO:0098656 GO:0098791 GO:0098827 GO:1901264 GO:1901505 GO:1901679 GO:1901682 GO:1902559

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UAA

Protein Analysis

220

Amino Acids

25.02

Weight (kDa)

8.86

Isoelectric Point (pI)

37.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EMG1	PF03587	38 - 118	2.6e-23	EMG1/NEP1 methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000871)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12600 AT4G23010 AT4G23010 AT4G23010
fragaria_vesca	FvH4_5g01421 FvH4_5g01421 FvH4_7g12950 FvH4_7g12950 FvH4_7g12950
malus_domestica	MD02G1194900.v1.1 MD04G1068500.v1.1 MD07G1125700.v1.1
prunus_persica	Prupe.2G153800_v2.0.a1 Prupe.5G089700_v2.0.a1 Prupe.5G089700_v2.0.a1
pyrus_communis	pycom02g15880 pycom04g06180 pycom07g11930
rosa_chinensis	RchiOBHm_Chr0c16g0499921 RchiOBHm_Chr1g0347281 RchiOBHm_Chr1g0352081 RchiOBHm_Chr3g0455881 RchiOBHm_Chr4g0437881 RchiOBHm_Chr7g0199431
rosa_laevigata	RLG00000002748 RLG00000003793 RLG00000006404 RLG00000028361
rosa_multiflora	Rmu_sc0002453.1_g000013 Rmu_sc0002464.1_g000008 Rmu_sc0003781.1_g000011 Rmu_sc0008907.1_g000006 Rmu_sc0010560.1_g000004
rosa_roxburghii	Rroxscaffold_3G00256730 Rroxscaffold_4G00303280 Rroxscaffold_5G00361360
rosa_rugosa	Rorug01G0080000 Rorug01G0223900 Rorug01G0224000 Rorug01G0224100 Rorug02G0308800 Rorug02G0308900 Rorug02G0309000 Rorug02G0515400 Rorug04G0305100 Rorug06G0238700 Rorug06G0238800 Rorug06G0238900 Rorug06G0239000 Rorug07G0053800 Rorug07G0053900.1 Rorug07G0054000
rosa_samantha	Rh1CG222900 Rh4BG367900 Rh4CG154300 Rh4CG381900 Rh4DG362500 Rh6BG359000 Rh6DG293200 Rh7AG179000 Rh7CG187600 Rh7DG181900
rosa_wichuraiana	Rw0G011570 Rw1G020720 Rw5G045820 Rw7G015720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	431
AciI	CCGC	2 cut(s)	17, 435
AclWI	GGATC	1 cut(s)	613
AfaI	GTAC	1 cut(s)	405
AfiI	CCNNNNNNNGG	1 cut(s)	431
AjnI	CCWGG	1 cut(s)	424
AluBI	AGCT	2 cut(s)	241, 399
AluI	AGCT	2 cut(s)	241, 399
Alw26I	GTCTC	1 cut(s)	341
AlwI	GGATC	1 cut(s)	613
AoxI	GGCC	1 cut(s)	8
ApeKI	GCWGC	6 cut(s)	235, 238, 241, 266, 396, 399
AseI	ATTAAT	2 cut(s)	120, 635
AspS9I	GGNCC	2 cut(s)	534, 576
AsuHPI	GGTGA	3 cut(s)	31, 350, 374
AvaII	GGWCC	2 cut(s)	534, 576
BauI	CACGAG	1 cut(s)	498
BbsI	GAAGAC	1 cut(s)	54
BbvI	GCAGC	6 cut(s)	222, 228, 250, 253, 386, 408
BccI	CCATC	1 cut(s)	151
BciT130I	CCWGG	1 cut(s)	426
BciVI	GTATCC	1 cut(s)	209
BclI	TGATCA	1 cut(s)	297
BcoDI	GTCTC	1 cut(s)	341
BfaI	CTAG	1 cut(s)	552
BfmI	CTRYAG	1 cut(s)	236
BfuI	GTATCC	1 cut(s)	209
BisI	GCNGC	6 cut(s)	236, 239, 242, 267, 397, 400
BlsI	GCNGC	6 cut(s)	237, 240, 243, 268, 398, 401
Bme1390I	CCNGG	1 cut(s)	426
Bme18I	GGWCC	2 cut(s)	534, 576
BmgT120I	GGNCC	2 cut(s)	534, 576
BmiI	GGNNCC	1 cut(s)	535
BmrFI	CCNGG	1 cut(s)	426
BmrI	ACTGGG	2 cut(s)	310, 540
BmuI	ACTGGG	2 cut(s)	310, 540
BpiI	GAAGAC	1 cut(s)	54
BsaJI	CCNNGG	1 cut(s)	203
Bsc4I	CCNNNNNNNGG	1 cut(s)	431
Bse1I	ACTGG	3 cut(s)	316, 364, 535
BseBI	CCWGG	1 cut(s)	426
BseDI	CCNNGG	1 cut(s)	203
BseGI	GGATG	1 cut(s)	169
BseLI	CCNNNNNNNGG	1 cut(s)	431
BseMII	CTCAG	1 cut(s)	245
BseNI	ACTGG	3 cut(s)	316, 364, 535
BseRI	GAGGAG	1 cut(s)	55
BseXI	GCAGC	6 cut(s)	222, 228, 250, 253, 386, 408
BshFI	GGCC	1 cut(s)	10
BslI	CCNNNNNNNGG	1 cut(s)	431
BsmAI	GTCTC	1 cut(s)	341
BsnI	GGCC	1 cut(s)	10
Bsp143I	GATC	2 cut(s)	297, 605
BspACI	CCGC	2 cut(s)	17, 435
BspANI	GGCC	1 cut(s)	10
BspCNI	CTCAG	1 cut(s)	246
BspLI	GGNNCC	1 cut(s)	535
BspMAI	CTGCAG	1 cut(s)	240
BspPI	GGATC	1 cut(s)	613
BsrI	ACTGG	3 cut(s)	316, 364, 535
BssECI	CCNNGG	1 cut(s)	203
BssMI	GATC	2 cut(s)	297, 605
BssSI	CACGAG	1 cut(s)	498
BssT1I	CCWWGG	1 cut(s)	203
Bst2BI	CACGAG	1 cut(s)	498
Bst2UI	CCWGG	1 cut(s)	426
Bst4CI	ACNGT	1 cut(s)	408
Bst6I	CTCTTC	1 cut(s)	17
BstDEI	CTNAG	1 cut(s)	254
BstF5I	GGATG	1 cut(s)	169
BstKTI	GATC	2 cut(s)	300, 608
BstMAI	GTCTC	1 cut(s)	341
BstMBI	GATC	2 cut(s)	297, 605
BstMWI	GCNNNNNNNGC	1 cut(s)	241
BstNI	CCWGG	1 cut(s)	426
BstSCI	CCNGG	1 cut(s)	424
BstSFI	CTRYAG	1 cut(s)	236
BstV1I	GCAGC	6 cut(s)	222, 228, 250, 253, 386, 408
BstV2I	GAAGAC	1 cut(s)	54
BstX2I	RGATCY	1 cut(s)	605
BstYI	RGATCY	1 cut(s)	605
BsuI	GTATCC	1 cut(s)	209
BsuRI	GGCC	1 cut(s)	10
BtgZI	GCGATG	1 cut(s)	119
BtsCI	GGATG	1 cut(s)	169
BtsIMutI	CAGTG	3 cut(s)	251, 327, 491
Cfr13I	GGNCC	2 cut(s)	534, 576
Csp6I	GTAC	1 cut(s)	404
CviAII	CATG	2 cut(s)	232, 335
CviJI	RGCY	9 cut(s)	10, 136, 187, 241, 332, 399, 515, 563, 570
CviKI_1	RGCY	9 cut(s)	10, 136, 187, 241, 332, 399, 515, 563, 570
CviQI	GTAC	1 cut(s)	404
DdeI	CTNAG	1 cut(s)	254
DpnI	GATC	2 cut(s)	299, 607
DpnII	GATC	2 cut(s)	297, 605
Eam1104I	CTCTTC	1 cut(s)	17
EarI	CTCTTC	1 cut(s)	17
Eco130I	CCWWGG	1 cut(s)	203
Eco47I	GGWCC	2 cut(s)	534, 576
EcoRII	CCWGG	1 cut(s)	424
EcoT14I	CCWWGG	1 cut(s)	203
ErhI	CCWWGG	1 cut(s)	203
FaeI	CATG	2 cut(s)	235, 338
FatI	CATG	2 cut(s)	231, 334
FauI	CCCGC	1 cut(s)	428
FauNDI	CATATG	2 cut(s)	13, 190
FbaI	TGATCA	1 cut(s)	297
Fnu4HI	GCNGC	6 cut(s)	236, 239, 242, 267, 397, 400
FokI	GGATG	1 cut(s)	176
Fsp4HI	GCNGC	6 cut(s)	236, 239, 242, 267, 397, 400
FspBI	CTAG	1 cut(s)	552
GluI	GCNGC	6 cut(s)	236, 239, 242, 267, 397, 400
HaeIII	GGCC	1 cut(s)	10
Hin1II	CATG	2 cut(s)	235, 338
HphI	GGTGA	3 cut(s)	31, 350, 374
Hpy188I	TCNGA	1 cut(s)	610
Hpy188III	TCNNGA	3 cut(s)	301, 552, 620
HpyCH4III	ACNGT	1 cut(s)	408
HpyCH4V	TGCA	2 cut(s)	238, 325
HpyF10VI	GCNNNNNNNGC	1 cut(s)	241
HpyF3I	CTNAG	1 cut(s)	254
Hsp92II	CATG	2 cut(s)	235, 338
Ksp22I	TGATCA	1 cut(s)	297
Kzo9I	GATC	2 cut(s)	297, 605
Lsp1109I	GCAGC	6 cut(s)	222, 228, 250, 253, 386, 408
MaeI	CTAG	1 cut(s)	552
MaeIII	GTNAC	1 cut(s)	310
MalI	GATC	2 cut(s)	299, 607
MboI	GATC	2 cut(s)	297, 605
MboII	GAAGA	8 cut(s)	34, 59, 80, 83, 86, 89, 92, 166
MflI	RGATCY	1 cut(s)	605
MluCI	AATT	2 cut(s)	117, 654
MnlI	CCTC	4 cut(s)	33, 36, 126, 154
MseI	TTAA	7 cut(s)	120, 183, 213, 491, 558, 635, 657
MspA1I	CMGCKG	2 cut(s)	241, 399
MspR9I	CCNGG	1 cut(s)	426
MvaI	CCWGG	1 cut(s)	426
MwoI	GCNNNNNNNGC	1 cut(s)	241
NdeI	CATATG	2 cut(s)	13, 190
NdeII	GATC	2 cut(s)	297, 605
NlaIII	CATG	2 cut(s)	235, 338
NlaIV	GGNNCC	1 cut(s)	535
NmuCI	GTSAC	1 cut(s)	310
PflFI	GACNNNGTC	1 cut(s)	316
PflMI	CCANNNNNTGG	1 cut(s)	431
PkrI	GCNGC	6 cut(s)	237, 240, 243, 268, 398, 401
PshBI	ATTAAT	2 cut(s)	120, 635
Psp6I	CCWGG	1 cut(s)	424
PspGI	CCWGG	1 cut(s)	424
PspN4I	GGNNCC	1 cut(s)	535
PspPI	GGNCC	2 cut(s)	534, 576
PstI	CTGCAG	1 cut(s)	240
PsuI	RGATCY	1 cut(s)	605
PsyI	GACNNNGTC	1 cut(s)	316
PvuII	CAGCTG	2 cut(s)	241, 399
RsaI	GTAC	1 cut(s)	405
RsaNI	GTAC	1 cut(s)	404
SaqAI	TTAA	7 cut(s)	120, 183, 213, 491, 558, 635, 657
SatI	GCNGC	6 cut(s)	236, 239, 242, 267, 397, 400
Sau3AI	GATC	2 cut(s)	297, 605
Sau96I	GGNCC	2 cut(s)	534, 576
ScrFI	CCNGG	1 cut(s)	426
SetI	ASST	4 cut(s)	243, 401, 511, 619
SfcI	CTRYAG	1 cut(s)	236
SinI	GGWCC	2 cut(s)	534, 576
Sse9I	AATT	2 cut(s)	117, 654
SsiI	CCGC	2 cut(s)	17, 435
SspMI	CTAG	1 cut(s)	552
StyD4I	CCNGG	1 cut(s)	424
StyI	CCWWGG	1 cut(s)	203
TaaI	ACNGT	1 cut(s)	408
TasI	AATT	2 cut(s)	117, 654
Tru1I	TTAA	7 cut(s)	120, 183, 213, 491, 558, 635, 657
Tru9I	TTAA	7 cut(s)	120, 183, 213, 491, 558, 635, 657
TscAI	CASTG	3 cut(s)	258, 327, 491
TseFI	GTSAC	1 cut(s)	310
TseI	GCWGC	6 cut(s)	235, 238, 241, 266, 396, 399
Tsp45I	GTSAC	1 cut(s)	310
TspDTI	ATGAA	1 cut(s)	81
TspGWI	ACGGA	1 cut(s)	655
TspRI	CASTG	3 cut(s)	258, 327, 491
Tth111I	GACNNNGTC	1 cut(s)	316
Van91I	CCANNNNNTGG	1 cut(s)	431
VpaK11BI	GGWCC	2 cut(s)	534, 576
VspI	ATTAAT	2 cut(s)	120, 635
XbaI	TCTAGA	1 cut(s)	551
XspI	CTAG	1 cut(s)	552

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.