Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0000871

Physical Location & Seq

Genomic Coordinates Reverse (-)

11701216 .. 11704652

Gene Structure 3437 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g12950.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGAAGAACGAAGAGCAAGCTCGGTTTCTGTTTGGGATTTCTCTCTCTGACAGACCCAAATGGCAGCAATTCCTGCTTTGCTCTTCTGGGTTCTTCTTTGGCTATCTTGTGAATGGTGTCTGTGAGGAATATGTGTATAACAGGCTACAATTCAGTTATGGGTGGTACTTCACTTTTGTACAAGGATTTGTGTATCTATTTCTGATTTATCTTCAAGGCTTTACCCCCAAGCAAATGGTGAACCCATGGAAGACTTATGTGAAGCTATCTGCTGTGCTTATGGGCTCTCATGGACTTACCAAAGGTTCCTTGGCTTTTCTCAACTACCCAGCACAGCTAATGTTCAAATCAACAAAGGTTCTGCCTGTGATGGTAATGGGAGCCTTCATACCAGGTTTGAGACGTAAGTACCCACCTCATGAGTACGTTTCTGCAATCCTTTTGGTGGTGGGGCTTATCTTATTCACCTTAGCGGATGCTCAAACGTCCCCCAACTTCAGCGTGATTGGTGTTGTGATGGTATCTGGTGCTCTAATCATGGATTCGTTTTTGGGTAATTTGCAAGAAGCTATATTTACCATGAACCCTGAAACCACACAGATGGAGATGCTGTTTTGCTCTACAGTAGTTGGCCTACCTTTCTTGGTTCCACCTATGATTTTGACAGGAGAATTATTCAAAGCATGGAGTTCGTGTTCTCAGCATCCATACGTATATGGTGTGTTAGTGTTTGAAGCCATGGCCACATTTATCGGCCAAGTTTCTGTCCTTTCCCTCATTGCACTGTTCGGTGCTGCCACCACAGCCATGATAACAACGGCTAGAAAGGCAGTGACATTATTGCTATCATACTTAATATTCACAAAGCCATTAACCGAAGAGCACGCGACTGGACTTCTGCTCATAGGTATGGGGATCACATTGAAGCTCTTGCCTGAGAATAAACCATACCAAAGGGTTCCAAATTCATCATCTGGCAAACCCAAGAGTTCAGAACCAGCTCATAACGAAGATGAGAATATTCAACTTGACCATCAACATGTTGAAGAAGACGAAGAAAAGAGGCCATTGGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0006810 GO:0006811 GO:0006820 GO:0006862 GO:0008150 GO:0008509 GO:0008514 GO:0012505 GO:0015075 GO:0015215 GO:0015216 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015868 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0022857 GO:0030173 GO:0030176 GO:0031090 GO:0031224 GO:0031227 GO:0031228 GO:0031300 GO:0031301 GO:0031984 GO:0034220 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046963 GO:0046964 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0071702 GO:0071705 GO:0072348 GO:0072530 GO:0098588 GO:0098656 GO:0098791 GO:0098827 GO:1901264 GO:1901505 GO:1901679 GO:1901682 GO:1902559

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UAA

Protein Analysis

359

Amino Acids

40.05

Weight (kDa)

6.66

Isoelectric Point (pI)

34.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UAA	PF08449	23 - 254	2.3e-58	UAA transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000871)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12600 AT4G23010 AT4G23010 AT4G23010
fragaria_vesca	FvH4_5g01421 FvH4_5g01421 FvH4_7g12950 FvH4_7g12950 FvH4_7g12950
malus_domestica	MD02G1194900.v1.1 MD04G1068500.v1.1 MD07G1125700.v1.1
prunus_persica	Prupe.2G153800_v2.0.a1 Prupe.5G089700_v2.0.a1 Prupe.5G089700_v2.0.a1
pyrus_communis	pycom02g15880 pycom04g06180 pycom07g11930
rosa_chinensis	RchiOBHm_Chr0c16g0499921 RchiOBHm_Chr1g0347281 RchiOBHm_Chr1g0352081 RchiOBHm_Chr3g0455881 RchiOBHm_Chr4g0437881 RchiOBHm_Chr7g0199431
rosa_laevigata	RLG00000002748 RLG00000003793 RLG00000006404 RLG00000028361
rosa_multiflora	Rmu_sc0002453.1_g000013 Rmu_sc0002464.1_g000008 Rmu_sc0003781.1_g000011 Rmu_sc0008907.1_g000006 Rmu_sc0010560.1_g000004
rosa_roxburghii	Rroxscaffold_3G00256730 Rroxscaffold_4G00303280 Rroxscaffold_5G00361360
rosa_rugosa	Rorug01G0080000 Rorug01G0223900 Rorug01G0224000 Rorug01G0224100 Rorug02G0308800 Rorug02G0308900 Rorug02G0309000 Rorug02G0515400 Rorug04G0305100 Rorug06G0238700 Rorug06G0238800 Rorug06G0238900 Rorug06G0239000 Rorug07G0053800 Rorug07G0053900.1 Rorug07G0054000
rosa_samantha	Rh1CG222900 Rh4BG367900 Rh4CG154300 Rh4CG381900 Rh4DG362500 Rh6BG359000 Rh6DG293200 Rh7AG179000 Rh7CG187600 Rh7DG181900
rosa_wichuraiana	Rw0G011570 Rw1G020720 Rw5G045820 Rw7G015720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	887
AciI	CCGC	1 cut(s)	473
AclWI	GGATC	1 cut(s)	923
AcoI	YGGCCR	2 cut(s)	741, 754
AcsI	RAATTY	1 cut(s)	964
AcuI	CTGAAG	1 cut(s)	481
AfaI	GTAC	4 cut(s)	167, 180, 410, 425
AfiI	CCNNNNNNNGG	1 cut(s)	445
AflIII	ACRYGT	1 cut(s)	1039
AgsI	TTSAA	7 cut(s)	215, 346, 679, 734, 925, 1025, 1046
AjnI	CCWGG	1 cut(s)	391
AloI	GAACNNNNNNTCC	2 cut(s)	679, 711
AluBI	AGCT	6 cut(s)	20, 265, 337, 569, 928, 1001
AluI	AGCT	6 cut(s)	20, 265, 337, 569, 928, 1001
Alw21I	GWGCWC	2 cut(s)	532, 885
Alw26I	GTCTC	1 cut(s)	394
AlwI	GGATC	1 cut(s)	923
AoxI	GGCC	4 cut(s)	631, 741, 754, 1064
ApeKI	GCWGC	2 cut(s)	64, 794
ApoI	RAATTY	1 cut(s)	964
AsuHPI	GGTGA	2 cut(s)	250, 457
BaeI	ACNNNNGTAYC	2 cut(s)	392, 425
BalI	TGGCCA	1 cut(s)	743
BanII	GRGCYC	1 cut(s)	287
BbsI	GAAGAC	2 cut(s)	257, 1056
Bbv12I	GWGCWC	2 cut(s)	532, 885
BbvI	GCAGC	2 cut(s)	76, 781
BccI	CCATC	4 cut(s)	364, 511, 595, 1041
BceAI	ACGGC	1 cut(s)	834
BcgI	CGANNNNNNTGC	2 cut(s)	672, 706
BciT130I	CCWGG	1 cut(s)	393
BcoDI	GTCTC	1 cut(s)	394
BfaI	CTAG	1 cut(s)	822
BfmI	CTRYAG	1 cut(s)	621
BisI	GCNGC	2 cut(s)	65, 795
BlsI	GCNGC	2 cut(s)	66, 796
Bme1390I	CCNGG	1 cut(s)	393
BmiI	GGNNCC	4 cut(s)	307, 382, 648, 960
BmrFI	CCNGG	1 cut(s)	393
BmsI	GCATC	3 cut(s)	466, 597, 712
BpiI	GAAGAC	2 cut(s)	257, 1056
Bpu10I	CCTNAGC	1 cut(s)	469
BsaAI	YACGTR	1 cut(s)	712
BsaJI	CCNNGG	3 cut(s)	245, 309, 738
BsaXI	ACNNNNNCTCC	4 cut(s)	596, 626, 679, 709
Bsc4I	CCNNNNNNNGG	1 cut(s)	445
Bse1I	ACTGG	1 cut(s)	895
Bse3DI	GCAATG	1 cut(s)	777
BseBI	CCWGG	1 cut(s)	393
BseDI	CCNNGG	3 cut(s)	245, 309, 738
BseGI	GGATG	2 cut(s)	481, 703
BseLI	CCNNNNNNNGG	1 cut(s)	445
BseMI	GCAATG	1 cut(s)	777
BseMII	CTCAG	2 cut(s)	713, 927
BseNI	ACTGG	1 cut(s)	895
BseXI	GCAGC	2 cut(s)	76, 781
BseYI	CCCAGC	1 cut(s)	328
Bsh1236I	CGCG	1 cut(s)	887
BshFI	GGCC	4 cut(s)	633, 743, 756, 1066
BsiHKAI	GWGCWC	2 cut(s)	532, 885
BslFI	GGGAC	1 cut(s)	472
BslI	CCNNNNNNNGG	1 cut(s)	445
BsmAI	GTCTC	1 cut(s)	394
BsmBI	CGTCTC	1 cut(s)	394
BsmFI	GGGAC	1 cut(s)	472
BsnI	GGCC	4 cut(s)	633, 743, 756, 1066
Bsp1286I	GDGCHC	3 cut(s)	287, 532, 885
Bsp1407I	TGTACA	1 cut(s)	178
Bsp143I	GATC	1 cut(s)	915
Bsp19I	CCATGG	2 cut(s)	245, 738
BspACI	CCGC	1 cut(s)	473
BspANI	GGCC	4 cut(s)	633, 743, 756, 1066
BspCNI	CTCAG	2 cut(s)	712, 928
BspFNI	CGCG	1 cut(s)	887
BspHI	TCATGA	1 cut(s)	418
BspLI	GGNNCC	4 cut(s)	307, 382, 648, 960
BspPI	GGATC	1 cut(s)	923
BspQI	GCTCTTC	3 cut(s)	6, 88, 873
BsrDI	GCAATG	1 cut(s)	777
BsrGI	TGTACA	1 cut(s)	178
BsrI	ACTGG	1 cut(s)	895
BssECI	CCNNGG	3 cut(s)	245, 309, 738
BssMI	GATC	1 cut(s)	915
BssT1I	CCWWGG	3 cut(s)	245, 309, 738
Bst2UI	CCWGG	1 cut(s)	393
Bst4CI	ACNGT	2 cut(s)	625, 786
Bst6I	CTCTTC	3 cut(s)	6, 88, 873
BstAPI	GCANNNNNTGC	1 cut(s)	73
BstAUI	TGTACA	1 cut(s)	178
BstBAI	YACGTR	1 cut(s)	712
BstC8I	GCNNGC	2 cut(s)	18, 885
BstDEI	CTNAG	3 cut(s)	469, 699, 936
BstDSI	CCRYGG	2 cut(s)	245, 738
BstF5I	GGATG	2 cut(s)	481, 703
BstFNI	CGCG	1 cut(s)	887
BstKTI	GATC	1 cut(s)	918
BstMAI	GTCTC	1 cut(s)	394
BstMBI	GATC	1 cut(s)	915
BstMWI	GCNNNNNNNGC	3 cut(s)	73, 803, 827
BstNI	CCWGG	1 cut(s)	393
BstNSI	RCATGY	1 cut(s)	1043
BstSCI	CCNGG	1 cut(s)	391
BstSFI	CTRYAG	1 cut(s)	621
BstSNI	TACGTA	1 cut(s)	712
BstUI	CGCG	1 cut(s)	887
BstV1I	GCAGC	2 cut(s)	76, 781
BstV2I	GAAGAC	2 cut(s)	257, 1056
BstXI	CCANNNNNNTGG	2 cut(s)	235, 601
BsuRI	GGCC	4 cut(s)	633, 743, 756, 1066
BtgI	CCRYGG	2 cut(s)	245, 738
BtsCI	GGATG	2 cut(s)	481, 703
BtsI	GCAGTG	1 cut(s)	837
BtsIMutI	CAGTG	2 cut(s)	782, 837
Cac8I	GCNNGC	2 cut(s)	18, 885
CciI	TCATGA	1 cut(s)	418
CsiI	ACCWGGT	1 cut(s)	391
Csp6I	GTAC	4 cut(s)	166, 179, 409, 424
CviAII	CATG	9 cut(s)	246, 290, 419, 538, 580, 684, 739, 808, 1040
CviQI	GTAC	4 cut(s)	166, 179, 409, 424
DdeI	CTNAG	3 cut(s)	469, 699, 936
DpnI	GATC	1 cut(s)	917
DpnII	GATC	1 cut(s)	915
EaeI	YGGCCR	2 cut(s)	741, 754
Eam1104I	CTCTTC	3 cut(s)	6, 88, 873
EarI	CTCTTC	3 cut(s)	6, 88, 873
Eco105I	TACGTA	1 cut(s)	712
Eco130I	CCWWGG	3 cut(s)	245, 309, 738
Eco24I	GRGCYC	1 cut(s)	287
Eco57I	CTGAAG	1 cut(s)	481
EcoRII	CCWGG	1 cut(s)	391
EcoT14I	CCWWGG	3 cut(s)	245, 309, 738
EcoT38I	GRGCYC	1 cut(s)	287
ErhI	CCWWGG	3 cut(s)	245, 309, 738
Esp3I	CGTCTC	1 cut(s)	394
FaeI	CATG	9 cut(s)	249, 293, 422, 541, 583, 687, 742, 811, 1043
FaqI	GGGAC	1 cut(s)	472
FatI	CATG	9 cut(s)	245, 289, 418, 537, 579, 683, 738, 807, 1039
Fnu4HI	GCNGC	2 cut(s)	65, 795
FokI	GGATG	2 cut(s)	488, 690
FriOI	GRGCYC	1 cut(s)	287
Fsp4HI	GCNGC	2 cut(s)	65, 795
FspBI	CTAG	1 cut(s)	822
GluI	GCNGC	2 cut(s)	65, 795
GsaI	CCCAGC	1 cut(s)	332
HaeIII	GGCC	4 cut(s)	633, 743, 756, 1066
Hin1II	CATG	9 cut(s)	249, 293, 422, 541, 583, 687, 742, 811, 1043
HinfI	GANTC	1 cut(s)	542
HphI	GGTGA	2 cut(s)	250, 457
Hpy166II	GTNNAC	1 cut(s)	241
Hpy188I	TCNGA	4 cut(s)	49, 204, 994, 1076
Hpy188III	TCNNGA	1 cut(s)	419
Hpy8I	GTNNAC	1 cut(s)	241
HpyAV	CCTTC	1 cut(s)	394
HpyCH4III	ACNGT	2 cut(s)	625, 786
HpyCH4IV	ACGT	4 cut(s)	403, 426, 485, 711
HpyCH4V	TGCA	3 cut(s)	434, 562, 782
HpyF10VI	GCNNNNNNNGC	3 cut(s)	73, 803, 827
HpyF3I	CTNAG	3 cut(s)	469, 699, 936
HpySE526I	ACGT	4 cut(s)	403, 426, 485, 711
Hsp92II	CATG	9 cut(s)	249, 293, 422, 541, 583, 687, 742, 811, 1043
Kzo9I	GATC	1 cut(s)	915
LguI	GCTCTTC	3 cut(s)	6, 88, 873
LmnI	GCTCC	1 cut(s)	380
Lsp1109I	GCAGC	2 cut(s)	76, 781
LweI	GCATC	3 cut(s)	466, 597, 712
MabI	ACCWGGT	1 cut(s)	391
MaeI	CTAG	1 cut(s)	822
MaeII	ACGT	4 cut(s)	403, 426, 485, 711
MaeIII	GTNAC	1 cut(s)	832
MalI	GATC	1 cut(s)	917
MboI	GATC	1 cut(s)	915
MhlI	GDGCHC	3 cut(s)	287, 532, 885
MlsI	TGGCCA	1 cut(s)	743
MluCI	AATT	5 cut(s)	68, 149, 556, 671, 964
MluNI	TGGCCA	1 cut(s)	743
MnlI	CCTC	4 cut(s)	118, 426, 785, 1056
Mox20I	TGGCCA	1 cut(s)	743
MscI	TGGCCA	1 cut(s)	743
MseI	TTAA	2 cut(s)	854, 872
MslI	CAYNNNNRTG	4 cut(s)	599, 806, 908, 1038
Msp20I	TGGCCA	1 cut(s)	743
MspR9I	CCNGG	1 cut(s)	393
MvaI	CCWGG	1 cut(s)	393
MvnI	CGCG	1 cut(s)	887
MwoI	GCNNNNNNNGC	3 cut(s)	73, 803, 827
NcoI	CCATGG	2 cut(s)	245, 738
NdeII	GATC	1 cut(s)	915
NlaIII	CATG	9 cut(s)	249, 293, 422, 541, 583, 687, 742, 811, 1043
NlaIV	GGNNCC	4 cut(s)	307, 382, 648, 960
NmuCI	GTSAC	1 cut(s)	832
NspI	RCATGY	1 cut(s)	1043
PagI	TCATGA	1 cut(s)	418
PciI	ACATGT	1 cut(s)	1039
PciSI	GCTCTTC	3 cut(s)	6, 88, 873
PfeI	GAWTC	1 cut(s)	542
PkrI	GCNGC	2 cut(s)	66, 796
Ppu21I	YACGTR	1 cut(s)	712
PscI	ACATGT	1 cut(s)	1039
Psp6I	CCWGG	1 cut(s)	391
PspFI	CCCAGC	1 cut(s)	328
PspGI	CCWGG	1 cut(s)	391
PspN4I	GGNNCC	4 cut(s)	307, 382, 648, 960
RsaI	GTAC	4 cut(s)	167, 180, 410, 425
RsaNI	GTAC	4 cut(s)	166, 179, 409, 424
RseI	CAYNNNNRTG	4 cut(s)	599, 806, 908, 1038
SapI	GCTCTTC	3 cut(s)	6, 88, 873
SaqAI	TTAA	2 cut(s)	854, 872
SatI	GCNGC	2 cut(s)	65, 795
Sau3AI	GATC	1 cut(s)	915
ScrFI	CCNGG	1 cut(s)	393
SduI	GDGCHC	3 cut(s)	287, 532, 885
SexAI	ACCWGGT	1 cut(s)	391
SfaNI	GCATC	3 cut(s)	466, 597, 712
SfcI	CTRYAG	1 cut(s)	621
SmiMI	CAYNNNNRTG	4 cut(s)	599, 806, 908, 1038
SnaBI	TACGTA	1 cut(s)	712
Sse9I	AATT	5 cut(s)	68, 149, 556, 671, 964
SsiI	CCGC	1 cut(s)	473
SspI	AATATT	2 cut(s)	858, 1021
SspMI	CTAG	1 cut(s)	822
StyD4I	CCNGG	1 cut(s)	391
StyI	CCWWGG	3 cut(s)	245, 309, 738
TaaI	ACNGT	2 cut(s)	625, 786
TaiI	ACGT	4 cut(s)	406, 429, 488, 714
TasI	AATT	5 cut(s)	68, 149, 556, 671, 964
TatI	WGTACW	1 cut(s)	178
TfiI	GAWTC	1 cut(s)	542
Tru1I	TTAA	2 cut(s)	854, 872
Tru9I	TTAA	2 cut(s)	854, 872
TscAI	CASTG	2 cut(s)	789, 837
TseFI	GTSAC	1 cut(s)	832
TseI	GCWGC	2 cut(s)	64, 794
Tsp45I	GTSAC	1 cut(s)	832
TspDTI	ATGAA	4 cut(s)	17, 376, 596, 957
TspRI	CASTG	2 cut(s)	789, 837
XapI	RAATTY	1 cut(s)	964
XceI	RCATGY	1 cut(s)	1043
XcmI	CCANNNNNNNNNTGG	1 cut(s)	307
XspI	CTAG	1 cut(s)	822

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.