Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0000871

Physical Location & Seq

Genomic Coordinates Forward (+)

21876490 .. 21878914

Gene Structure 2425 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028361

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGAAGAACGAAGAACAAGCTCGGTTTCTGTTTGGGATTTCGCTCTCTGATAGACCCAAATGGCAGCAATTCCTGCTTTGCTCTTCTGGGTTCTTCTTTGGTTATCTGGTTAATGGTGTCTGTGAGGAATATGTGTATAACAGGCTACAATTCAGTTATGGGTGGTACTTCACATTTGTACAAGGATTTGTGTATCTATTTCTGATTTATCTTCAAGGCTTTACCACCAAGCAAATGGTGAACCCATGGAAGACTTATGTGAAGCTATCTGCTGTGCTTATGGGCTCTCATGGACTTACCAAAGGCTCCTTGGCTTTTCTCAACTACCCCGCACAGCTAATGTTCAAATCAACAAAGGTTTTGCCTGTGATGATAATGGGAGCCTTCATACCAGGTTTGAGGCGGAAGTACCCACCTCATGAGTACGTTTCTGCAATCCTTCTGGTGGTGGGTCTGATCCTATTCACCTTAGCTGATGCACAAACGTCTCCCAACTTCAGCGTGATTGGTGTGGTGATGGTATCGGGTGCTCTAGTCATGGATTCGTTTTTGGGTAATTTGCAAGAGGCAATATTTACCATGAATCCTGAAACCACACAGATGGAGATGCTGTTTTGCTCTACGGTAGTTGGTCTACCTTTCTTGGTGCCACCAATGATTTTGACAGGAGAATTATTCAAAGCGTGGAGTTCATGTTCTCAGCATCCATACGTTTATGGTGTGTTAGTCTTTGAAGCCATGGCCACGTTTATTGGCCAAGTTTCTGTCCTTTCCCTCATTGCACTTTTTGGTGCTGCCACCACAGCCATGATAACAACGGCTAGAAAGGCAGTGACATTATTGCTATCATACTTGATATTCACAAAGCCATTAACTGAAGAACACGGGACTGGACTTCTGCTCATAGGTATGGGGATCACATTGAAGCTCTTGCCTGAGAATAAACCATACCAAAGGGTTTCAAACTCATCATCTGGCAAACCAAAGAGTTCAAAGCCAGCTCATAACGAAGAGGAGATAATTCAACTTGACCATCAACATGTTGGAGAAGATGAAGAAAAGAGGCCATTGGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0006810 GO:0006811 GO:0006820 GO:0006862 GO:0008150 GO:0008509 GO:0008514 GO:0012505 GO:0015075 GO:0015215 GO:0015216 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015868 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0022857 GO:0030173 GO:0030176 GO:0031090 GO:0031224 GO:0031227 GO:0031228 GO:0031300 GO:0031301 GO:0031984 GO:0034220 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046963 GO:0046964 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0071702 GO:0071705 GO:0072348 GO:0072530 GO:0098588 GO:0098656 GO:0098791 GO:0098827 GO:1901264 GO:1901505 GO:1901679 GO:1901682 GO:1902559

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UAA

Protein Analysis

359

Amino Acids

39.97

Weight (kDa)

8.22

Isoelectric Point (pI)

31.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UAA	PF08449	23 - 310	1.5e-80	UAA transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000871)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12600 AT4G23010 AT4G23010 AT4G23010
fragaria_vesca	FvH4_5g01421 FvH4_5g01421 FvH4_7g12950 FvH4_7g12950 FvH4_7g12950
malus_domestica	MD02G1194900.v1.1 MD04G1068500.v1.1 MD07G1125700.v1.1
prunus_persica	Prupe.2G153800_v2.0.a1 Prupe.5G089700_v2.0.a1 Prupe.5G089700_v2.0.a1
pyrus_communis	pycom02g15880 pycom04g06180 pycom07g11930
rosa_chinensis	RchiOBHm_Chr0c16g0499921 RchiOBHm_Chr1g0347281 RchiOBHm_Chr1g0352081 RchiOBHm_Chr3g0455881 RchiOBHm_Chr4g0437881 RchiOBHm_Chr7g0199431
rosa_laevigata	RLG00000002748 RLG00000003793 RLG00000006404 RLG00000028361
rosa_multiflora	Rmu_sc0002453.1_g000013 Rmu_sc0002464.1_g000008 Rmu_sc0003781.1_g000011 Rmu_sc0008907.1_g000006 Rmu_sc0010560.1_g000004
rosa_roxburghii	Rroxscaffold_3G00256730 Rroxscaffold_4G00303280 Rroxscaffold_5G00361360
rosa_rugosa	Rorug01G0080000 Rorug01G0223900 Rorug01G0224000 Rorug01G0224100 Rorug02G0308800 Rorug02G0308900 Rorug02G0309000 Rorug02G0515400 Rorug04G0305100 Rorug06G0238700 Rorug06G0238800 Rorug06G0238900 Rorug06G0239000 Rorug07G0053800 Rorug07G0053900.1 Rorug07G0054000
rosa_samantha	Rh1CG222900 Rh4BG367900 Rh4CG154300 Rh4CG381900 Rh4DG362500 Rh6BG359000 Rh6DG293200 Rh7AG179000 Rh7CG187600 Rh7DG181900
rosa_wichuraiana	Rw0G011570 Rw1G020720 Rw5G045820 Rw7G015720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	646
AccI	GTMKAC	1 cut(s)	634
AciI	CCGC	2 cut(s)	330, 403
AclWI	GGATC	2 cut(s)	451, 923
AcoI	YGGCCR	2 cut(s)	741, 754
AcuI	CTGAAG	2 cut(s)	481, 897
AfaI	GTAC	4 cut(s)	167, 180, 410, 425
AfiI	CCNNNNNNNGG	1 cut(s)	445
AflIII	ACRYGT	1 cut(s)	1039
AgsI	TTSAA	8 cut(s)	215, 346, 679, 734, 925, 963, 993, 1025
AjnI	CCWGG	1 cut(s)	391
AloI	GAACNNNNNNTCC	2 cut(s)	679, 711
AluBI	AGCT	6 cut(s)	20, 265, 337, 473, 928, 1001
AluI	AGCT	6 cut(s)	20, 265, 337, 473, 928, 1001
Alw21I	GWGCWC	1 cut(s)	532
Alw26I	GTCTC	1 cut(s)	492
AlwI	GGATC	2 cut(s)	451, 923
AoxI	GGCC	3 cut(s)	741, 754, 1064
ApeKI	GCWGC	2 cut(s)	64, 794
AsuHPI	GGTGA	3 cut(s)	250, 457, 526
BalI	TGGCCA	2 cut(s)	743, 756
BanI	GGYRCC	1 cut(s)	646
BanII	GRGCYC	1 cut(s)	287
BbsI	GAAGAC	1 cut(s)	257
Bbv12I	GWGCWC	1 cut(s)	532
BbvI	GCAGC	2 cut(s)	76, 781
BccI	CCATC	3 cut(s)	511, 595, 1041
BceAI	ACGGC	1 cut(s)	834
BciT130I	CCWGG	1 cut(s)	393
BcoDI	GTCTC	1 cut(s)	492
BfaI	CTAG	2 cut(s)	533, 822
BisI	GCNGC	2 cut(s)	65, 795
BlsI	GCNGC	2 cut(s)	66, 796
Bme1390I	CCNGG	1 cut(s)	393
BmiI	GGNNCC	3 cut(s)	307, 382, 648
BmrFI	CCNGG	1 cut(s)	393
BmsI	GCATC	3 cut(s)	466, 597, 712
BpiI	GAAGAC	1 cut(s)	257
Bpu10I	CCTNAGC	1 cut(s)	469
BsaJI	CCNNGG	3 cut(s)	245, 309, 738
BsaXI	ACNNNNNCTCC	4 cut(s)	596, 626, 679, 709
Bsc4I	CCNNNNNNNGG	1 cut(s)	445
Bse1I	ACTGG	1 cut(s)	895
Bse3DI	GCAATG	1 cut(s)	777
BseBI	CCWGG	1 cut(s)	393
BseDI	CCNNGG	3 cut(s)	245, 309, 738
BseGI	GGATG	1 cut(s)	703
BseLI	CCNNNNNNNGG	1 cut(s)	445
BseMI	GCAATG	1 cut(s)	777
BseMII	CTCAG	2 cut(s)	713, 927
BseNI	ACTGG	1 cut(s)	895
BseRI	GAGGAG	1 cut(s)	1028
BseXI	GCAGC	2 cut(s)	76, 781
BshFI	GGCC	3 cut(s)	743, 756, 1066
BshNI	GGYRCC	1 cut(s)	646
BsiHKAI	GWGCWC	1 cut(s)	532
BslFI	GGGAC	1 cut(s)	901
BslI	CCNNNNNNNGG	1 cut(s)	445
BsmAI	GTCTC	1 cut(s)	492
BsmBI	CGTCTC	1 cut(s)	492
BsmFI	GGGAC	1 cut(s)	901
BsnI	GGCC	3 cut(s)	743, 756, 1066
Bsp1286I	GDGCHC	2 cut(s)	287, 532
Bsp1407I	TGTACA	1 cut(s)	178
Bsp143I	GATC	2 cut(s)	456, 915
Bsp19I	CCATGG	2 cut(s)	245, 738
BspACI	CCGC	2 cut(s)	330, 403
BspANI	GGCC	3 cut(s)	743, 756, 1066
BspCNI	CTCAG	2 cut(s)	712, 928
BspHI	TCATGA	1 cut(s)	418
BspLI	GGNNCC	3 cut(s)	307, 382, 648
BspPI	GGATC	2 cut(s)	451, 923
BspQI	GCTCTTC	1 cut(s)	88
BspT107I	GGYRCC	1 cut(s)	646
BsrDI	GCAATG	1 cut(s)	777
BsrGI	TGTACA	1 cut(s)	178
BsrI	ACTGG	1 cut(s)	895
BssECI	CCNNGG	3 cut(s)	245, 309, 738
BssMI	GATC	2 cut(s)	456, 915
BssT1I	CCWWGG	3 cut(s)	245, 309, 738
Bst2UI	CCWGG	1 cut(s)	393
Bst4CI	ACNGT	1 cut(s)	625
Bst6I	CTCTTC	2 cut(s)	88, 1005
BstAPI	GCANNNNNTGC	1 cut(s)	73
BstAUI	TGTACA	1 cut(s)	178
BstC8I	GCNNGC	1 cut(s)	999
BstDEI	CTNAG	3 cut(s)	469, 699, 936
BstDSI	CCRYGG	2 cut(s)	245, 738
BstF5I	GGATG	1 cut(s)	703
BstKTI	GATC	2 cut(s)	459, 918
BstMAI	GTCTC	1 cut(s)	492
BstMBI	GATC	2 cut(s)	456, 915
BstMWI	GCNNNNNNNGC	3 cut(s)	73, 803, 827
BstNI	CCWGG	1 cut(s)	393
BstNSI	RCATGY	1 cut(s)	1043
BstSCI	CCNGG	1 cut(s)	391
BstV1I	GCAGC	2 cut(s)	76, 781
BstV2I	GAAGAC	1 cut(s)	257
BstXI	CCANNNNNNTGG	2 cut(s)	235, 601
BsuRI	GGCC	3 cut(s)	743, 756, 1066
BtgI	CCRYGG	2 cut(s)	245, 738
BtsCI	GGATG	1 cut(s)	703
BtsI	GCAGTG	1 cut(s)	837
BtsIMutI	CAGTG	1 cut(s)	837
Cac8I	GCNNGC	1 cut(s)	999
CciI	TCATGA	1 cut(s)	418
CsiI	ACCWGGT	1 cut(s)	391
Csp6I	GTAC	4 cut(s)	166, 179, 409, 424
CspCI	CAANNNNNGTGG	2 cut(s)	733, 768
CviAII	CATG	9 cut(s)	246, 290, 419, 538, 580, 693, 739, 808, 1040
CviQI	GTAC	4 cut(s)	166, 179, 409, 424
DdeI	CTNAG	3 cut(s)	469, 699, 936
DpnI	GATC	2 cut(s)	458, 917
DpnII	GATC	2 cut(s)	456, 915
EaeI	YGGCCR	2 cut(s)	741, 754
Eam1104I	CTCTTC	2 cut(s)	88, 1005
EarI	CTCTTC	2 cut(s)	88, 1005
EciI	GGCGGA	1 cut(s)	418
Eco130I	CCWWGG	3 cut(s)	245, 309, 738
Eco24I	GRGCYC	1 cut(s)	287
Eco57I	CTGAAG	2 cut(s)	481, 897
EcoRII	CCWGG	1 cut(s)	391
EcoT14I	CCWWGG	3 cut(s)	245, 309, 738
EcoT38I	GRGCYC	1 cut(s)	287
ErhI	CCWWGG	3 cut(s)	245, 309, 738
Esp3I	CGTCTC	1 cut(s)	492
FaeI	CATG	9 cut(s)	249, 293, 422, 541, 583, 696, 742, 811, 1043
FaqI	GGGAC	1 cut(s)	901
FatI	CATG	9 cut(s)	245, 289, 418, 537, 579, 692, 738, 807, 1039
FauI	CCCGC	1 cut(s)	337
FblI	GTMKAC	1 cut(s)	634
Fnu4HI	GCNGC	2 cut(s)	65, 795
FokI	GGATG	1 cut(s)	690
FriOI	GRGCYC	1 cut(s)	287
Fsp4HI	GCNGC	2 cut(s)	65, 795
FspBI	CTAG	2 cut(s)	533, 822
GluI	GCNGC	2 cut(s)	65, 795
HaeIII	GGCC	3 cut(s)	743, 756, 1066
Hin1II	CATG	9 cut(s)	249, 293, 422, 541, 583, 696, 742, 811, 1043
HinfI	GANTC	2 cut(s)	542, 583
HphI	GGTGA	3 cut(s)	250, 457, 526
Hpy166II	GTNNAC	2 cut(s)	241, 635
Hpy188I	TCNGA	4 cut(s)	49, 204, 456, 1076
Hpy188III	TCNNGA	2 cut(s)	419, 587
Hpy8I	GTNNAC	2 cut(s)	241, 635
HpyAV	CCTTC	2 cut(s)	394, 449
HpyCH4III	ACNGT	1 cut(s)	625
HpyCH4IV	ACGT	4 cut(s)	426, 485, 711, 746
HpyCH4V	TGCA	4 cut(s)	434, 479, 562, 782
HpyF10VI	GCNNNNNNNGC	3 cut(s)	73, 803, 827
HpyF3I	CTNAG	3 cut(s)	469, 699, 936
HpySE526I	ACGT	4 cut(s)	426, 485, 711, 746
Hsp92II	CATG	9 cut(s)	249, 293, 422, 541, 583, 696, 742, 811, 1043
Kzo9I	GATC	2 cut(s)	456, 915
LguI	GCTCTTC	1 cut(s)	88
LmnI	GCTCC	2 cut(s)	311, 380
Lsp1109I	GCAGC	2 cut(s)	76, 781
LweI	GCATC	3 cut(s)	466, 597, 712
MabI	ACCWGGT	1 cut(s)	391
MaeI	CTAG	2 cut(s)	533, 822
MaeII	ACGT	4 cut(s)	426, 485, 711, 746
MaeIII	GTNAC	1 cut(s)	832
MalI	GATC	2 cut(s)	458, 917
MboI	GATC	2 cut(s)	456, 915
MhlI	GDGCHC	2 cut(s)	287, 532
MlsI	TGGCCA	2 cut(s)	743, 756
MluCI	AATT	5 cut(s)	68, 149, 556, 671, 1020
MluNI	TGGCCA	2 cut(s)	743, 756
MmeI	TCCRAC	1 cut(s)	1024
MnlI	CCTC	7 cut(s)	118, 393, 426, 559, 785, 1006, 1056
Mox20I	TGGCCA	2 cut(s)	743, 756
MscI	TGGCCA	2 cut(s)	743, 756
MseI	TTAA	2 cut(s)	111, 872
MslI	CAYNNNNRTG	4 cut(s)	599, 806, 908, 1038
Msp20I	TGGCCA	2 cut(s)	743, 756
MspR9I	CCNGG	1 cut(s)	393
MvaI	CCWGG	1 cut(s)	393
MwoI	GCNNNNNNNGC	3 cut(s)	73, 803, 827
NcoI	CCATGG	2 cut(s)	245, 738
NdeII	GATC	2 cut(s)	456, 915
NlaIII	CATG	9 cut(s)	249, 293, 422, 541, 583, 696, 742, 811, 1043
NlaIV	GGNNCC	3 cut(s)	307, 382, 648
NmuCI	GTSAC	1 cut(s)	832
NspI	RCATGY	1 cut(s)	1043
PagI	TCATGA	1 cut(s)	418
PciI	ACATGT	1 cut(s)	1039
PciSI	GCTCTTC	1 cut(s)	88
PfeI	GAWTC	2 cut(s)	542, 583
PkrI	GCNGC	2 cut(s)	66, 796
PscI	ACATGT	1 cut(s)	1039
Psp6I	CCWGG	1 cut(s)	391
PspGI	CCWGG	1 cut(s)	391
PspN4I	GGNNCC	3 cut(s)	307, 382, 648
RsaI	GTAC	4 cut(s)	167, 180, 410, 425
RsaNI	GTAC	4 cut(s)	166, 179, 409, 424
RseI	CAYNNNNRTG	4 cut(s)	599, 806, 908, 1038
SapI	GCTCTTC	1 cut(s)	88
SaqAI	TTAA	2 cut(s)	111, 872
SatI	GCNGC	2 cut(s)	65, 795
Sau3AI	GATC	2 cut(s)	456, 915
ScrFI	CCNGG	1 cut(s)	393
SduI	GDGCHC	2 cut(s)	287, 532
SexAI	ACCWGGT	1 cut(s)	391
SfaNI	GCATC	3 cut(s)	466, 597, 712
SmiMI	CAYNNNNRTG	4 cut(s)	599, 806, 908, 1038
Sse9I	AATT	5 cut(s)	68, 149, 556, 671, 1020
SsiI	CCGC	2 cut(s)	330, 403
SspI	AATATT	1 cut(s)	573
SspMI	CTAG	2 cut(s)	533, 822
StyD4I	CCNGG	1 cut(s)	391
StyI	CCWWGG	3 cut(s)	245, 309, 738
TaaI	ACNGT	1 cut(s)	625
TaiI	ACGT	4 cut(s)	429, 488, 714, 749
TasI	AATT	5 cut(s)	68, 149, 556, 671, 1020
TatI	WGTACW	1 cut(s)	178
TfiI	GAWTC	2 cut(s)	542, 583
Tru1I	TTAA	2 cut(s)	111, 872
Tru9I	TTAA	2 cut(s)	111, 872
TscAI	CASTG	1 cut(s)	837
TseFI	GTSAC	1 cut(s)	832
TseI	GCWGC	2 cut(s)	64, 794
Tsp45I	GTSAC	1 cut(s)	832
TspDTI	ATGAA	5 cut(s)	17, 376, 596, 681, 1068
TspRI	CASTG	1 cut(s)	837
XceI	RCATGY	1 cut(s)	1043
XcmI	CCANNNNNNNNNTGG	3 cut(s)	232, 307, 1040
XmiI	GTMKAC	1 cut(s)	634
XspI	CTAG	2 cut(s)	533, 822

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.