Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000871

Physical Location & Seq

Genomic Coordinates Reverse (-)

32197421 .. 32199921

Gene Structure 2501 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0224000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGTACGGCCTCTGGCTCTCCCAACGCCGCCACCACCACTCGGACAACTATGACGACGGCCACCGTACCCAGCCCTATAATCTGTCTCGCAAAAGGCTCAGCCCCCTCAGCCCGGCAAGAAGCAGTTCATCATCGAACCCTTCAAAGACAAAGTTTATCGAAGGGGCCAAAGAACGTAAAGAACTCTACAACAAGGTGTTAGAGTTGAAAGGAAACATAAGGGTCTTTTGCAGGTGTAGGCCTCTAAACACTGAGGAAGTTTCAGCAGGAGCTTCAATGGCTATTGACTTTGAATCTGAGAAAGAAGGTGCGCTTGTTGTCAAGTCAAATGGGGTTACAAGAAGGACCTTTAAGTTTGATGCAGTTTTCGGCCCTCAAGCAGACCAAGCTGATGTCTTCGAAGACACAGCTCCATTTGCAACCTCAGTTCTAGATGGGTACAATGTCTGCATATTTGCTTACGGGCAGACTGAAAGTGGAAAAACCTTTACAATGGAGGGAACGGAAGAAGCTCGGGGAGTCAATTTTAGGACTCTTGAGCAACTGTTTCGCTTGAAATTAGACAAGCTGGAGAAGGGAGACATCATGTTCCAGGACTTGTTGAGGCATGTGAAAAACATGAATGAAGTCTGGGAAGTTCTCCAAACTGACAGTAATGCAAGGGCTGTTGGCTCAACCAATGCCAATGAGCATAGTAGCTGTGACTTTGGATTCAGATATTTTTACCAAGAATTTTGTATCCCAATGCAAGTGAAGCATCTTAGAATGGTGGTTCTGCACATTAGACCCGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0006810 GO:0006811 GO:0006820 GO:0006862 GO:0008150 GO:0008509 GO:0008514 GO:0012505 GO:0015075 GO:0015215 GO:0015216 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015868 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0022857 GO:0030173 GO:0030176 GO:0031090 GO:0031224 GO:0031227 GO:0031228 GO:0031300 GO:0031301 GO:0031984 GO:0034220 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046963 GO:0046964 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0071702 GO:0071705 GO:0072348 GO:0072530 GO:0098588 GO:0098656 GO:0098791 GO:0098827 GO:1901264 GO:1901505 GO:1901679 GO:1901682 GO:1902559

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UAA

Protein Analysis

264

Amino Acids

30.23

Weight (kDa)

7.68

Isoelectric Point (pI)

47.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Microtub_bd	PF16796	56 - 191	1.9e-36	Microtubule binding
Kinesin	PF00225	78 - 186	1.6e-31	Kinesin motor domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000871)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12600 AT4G23010 AT4G23010 AT4G23010
fragaria_vesca	FvH4_5g01421 FvH4_5g01421 FvH4_7g12950 FvH4_7g12950 FvH4_7g12950
malus_domestica	MD02G1194900.v1.1 MD04G1068500.v1.1 MD07G1125700.v1.1
prunus_persica	Prupe.2G153800_v2.0.a1 Prupe.5G089700_v2.0.a1 Prupe.5G089700_v2.0.a1
pyrus_communis	pycom02g15880 pycom04g06180 pycom07g11930
rosa_chinensis	RchiOBHm_Chr0c16g0499921 RchiOBHm_Chr1g0347281 RchiOBHm_Chr1g0352081 RchiOBHm_Chr3g0455881 RchiOBHm_Chr4g0437881 RchiOBHm_Chr7g0199431
rosa_laevigata	RLG00000002748 RLG00000003793 RLG00000006404 RLG00000028361
rosa_multiflora	Rmu_sc0002453.1_g000013 Rmu_sc0002464.1_g000008 Rmu_sc0003781.1_g000011 Rmu_sc0008907.1_g000006 Rmu_sc0010560.1_g000004
rosa_roxburghii	Rroxscaffold_3G00256730 Rroxscaffold_4G00303280 Rroxscaffold_5G00361360
rosa_rugosa	Rorug01G0080000 Rorug01G0223900 Rorug01G0224000 Rorug01G0224100 Rorug02G0308800 Rorug02G0308900 Rorug02G0309000 Rorug02G0515400 Rorug04G0305100 Rorug06G0238700 Rorug06G0238800 Rorug06G0238900 Rorug06G0239000 Rorug07G0053800 Rorug07G0053900.1 Rorug07G0054000
rosa_samantha	Rh1CG222900 Rh4BG367900 Rh4CG154300 Rh4CG381900 Rh4DG362500 Rh6BG359000 Rh6DG293200 Rh7AG179000 Rh7CG187600 Rh7DG181900
rosa_wichuraiana	Rw0G011570 Rw1G020720 Rw5G045820 Rw7G015720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	222
Acc36I	ACCTGC	1 cut(s)	222
AciI	CCGC	1 cut(s)	28
AcoI	YGGCCR	1 cut(s)	58
AcsI	RAATTY	1 cut(s)	731
AfaI	GTAC	3 cut(s)	5, 67, 440
AfiI	CCNNNNNNNGG	2 cut(s)	40, 112
AgsI	TTSAA	5 cut(s)	144, 208, 276, 293, 556
AjnI	CCWGG	1 cut(s)	591
AluBI	AGCT	6 cut(s)	272, 389, 410, 512, 568, 699
AluI	AGCT	6 cut(s)	272, 389, 410, 512, 568, 699
Alw26I	GTCTC	2 cut(s)	90, 573
Ama87I	CYCGRG	1 cut(s)	513
AoxI	GGCC	5 cut(s)	7, 58, 165, 239, 370
ApoI	RAATTY	1 cut(s)	731
Asp700I	GAANNNNTTC	1 cut(s)	124
AspLEI	GCGC	1 cut(s)	313
AspS9I	GGNCC	3 cut(s)	165, 345, 371
AsuC2I	CCSGG	1 cut(s)	113
AsuII	TTCGAA	1 cut(s)	399
AvaI	CYCGRG	1 cut(s)	513
AvaII	GGWCC	1 cut(s)	345
BbsI	GAAGAC	2 cut(s)	388, 408
BbvCI	CCTCAGC	1 cut(s)	107
BccI	CCATC	1 cut(s)	428
BceAI	ACGGC	2 cut(s)	22, 73
BcgI	CGANNNNNNTGC	2 cut(s)	530, 564
BciT130I	CCWGG	1 cut(s)	593
BciVI	GTATCC	1 cut(s)	749
BcnI	CCSGG	1 cut(s)	113
BcoDI	GTCTC	2 cut(s)	90, 573
BfaI	CTAG	1 cut(s)	431
BfuAI	ACCTGC	1 cut(s)	222
BfuI	GTATCC	1 cut(s)	749
BisI	GCNGC	1 cut(s)	28
BlpI	GCTNAGC	1 cut(s)	98
BlsI	GCNGC	1 cut(s)	29
Bme1390I	CCNGG	2 cut(s)	113, 593
Bme18I	GGWCC	1 cut(s)	345
BmeT110I	CYCGRG	1 cut(s)	513
BmgT120I	GGNCC	3 cut(s)	165, 345, 371
BmiI	GGNNCC	1 cut(s)	166
BmrFI	CCNGG	2 cut(s)	113, 593
BmsI	GCATC	2 cut(s)	349, 766
BpiI	GAAGAC	2 cut(s)	388, 408
BpmI	CTGGAG	1 cut(s)	590
Bpu10I	CCTNAGC	1 cut(s)	107
Bpu1102I	GCTNAGC	1 cut(s)	98
Bpu14I	TTCGAA	1 cut(s)	399
BpuEI	CTTGAG	2 cut(s)	360, 557
BpuMI	CCSGG	1 cut(s)	113
Bsc4I	CCNNNNNNNGG	2 cut(s)	40, 112
BseBI	CCWGG	1 cut(s)	593
BseLI	CCNNNNNNNGG	2 cut(s)	40, 112
BseMII	CTCAG	5 cut(s)	112, 121, 243, 288, 438
BseYI	CCCAGC	1 cut(s)	69
BsgI	GTGCAG	1 cut(s)	761
BshFI	GGCC	5 cut(s)	9, 60, 167, 241, 372
BsiHKCI	CYCGRG	1 cut(s)	513
BsiSI	CCGG	1 cut(s)	113
BslI	CCNNNNNNNGG	2 cut(s)	40, 112
BsmAI	GTCTC	2 cut(s)	90, 573
BsnI	GGCC	5 cut(s)	9, 60, 167, 241, 372
BsoBI	CYCGRG	1 cut(s)	513
Bsp119I	TTCGAA	1 cut(s)	399
Bsp1720I	GCTNAGC	1 cut(s)	98
BspACI	CCGC	1 cut(s)	28
BspANI	GGCC	5 cut(s)	9, 60, 167, 241, 372
BspCNI	CTCAG	5 cut(s)	111, 120, 244, 289, 437
BspLI	GGNNCC	1 cut(s)	166
BspMI	ACCTGC	1 cut(s)	222
BspT104I	TTCGAA	1 cut(s)	399
Bst2UI	CCWGG	1 cut(s)	593
Bst4CI	ACNGT	3 cut(s)	65, 546, 653
BstBI	TTCGAA	1 cut(s)	399
BstDEI	CTNAG	6 cut(s)	98, 107, 252, 297, 424, 761
BstHHI	GCGC	1 cut(s)	313
BstMAI	GTCTC	2 cut(s)	90, 573
BstMWI	GCNNNNNNNGC	5 cut(s)	108, 278, 386, 416, 754
BstNI	CCWGG	1 cut(s)	593
BstNSI	RCATGY	1 cut(s)	611
BstSCI	CCNGG	2 cut(s)	111, 591
BstV2I	GAAGAC	2 cut(s)	388, 408
BsuI	GTATCC	1 cut(s)	749
BsuRI	GGCC	5 cut(s)	9, 60, 167, 241, 372
BtsIMutI	CAGTG	1 cut(s)	249
BveI	ACCTGC	1 cut(s)	222
CfoI	GCGC	1 cut(s)	313
Cfr13I	GGNCC	3 cut(s)	165, 345, 371
Csp6I	GTAC	3 cut(s)	4, 66, 439
CviAII	CATG	3 cut(s)	586, 608, 619
CviQI	GTAC	3 cut(s)	4, 66, 439
DdeI	CTNAG	6 cut(s)	98, 107, 252, 297, 424, 761
EaeI	YGGCCR	1 cut(s)	58
Eco147I	AGGCCT	1 cut(s)	241
Eco47I	GGWCC	1 cut(s)	345
Eco88I	CYCGRG	1 cut(s)	513
EcoO109I	RGGNCCY	1 cut(s)	345
EcoRII	CCWGG	1 cut(s)	591
FaeI	CATG	3 cut(s)	589, 611, 622
FaiI	YATR	8 cut(s)	51, 78, 218, 452, 587, 609, 620, 693
FalI	AAGNNNNNCTT	2 cut(s)	297, 329
FatI	CATG	3 cut(s)	585, 607, 618
Fnu4HI	GCNGC	1 cut(s)	28
Fsp4HI	GCNGC	1 cut(s)	28
FspBI	CTAG	1 cut(s)	431
GlaI	GCGC	1 cut(s)	312
GluI	GCNGC	1 cut(s)	28
GsaI	CCCAGC	1 cut(s)	73
GsuI	CTGGAG	1 cut(s)	590
HaeIII	GGCC	5 cut(s)	9, 60, 167, 241, 372
HapII	CCGG	1 cut(s)	113
HhaI	GCGC	1 cut(s)	313
Hin1II	CATG	3 cut(s)	589, 611, 622
Hin6I	GCGC	1 cut(s)	311
HinP1I	GCGC	1 cut(s)	311
HinfI	GANTC	4 cut(s)	293, 519, 532, 711
HpaII	CCGG	1 cut(s)	113
Hpy188I	TCNGA	3 cut(s)	43, 298, 716
Hpy188III	TCNNGA	2 cut(s)	431, 536
Hpy99I	CGWCG	1 cut(s)	59
HpyAV	CCTTC	5 cut(s)	150, 155, 299, 336, 568
HpyCH4III	ACNGT	3 cut(s)	65, 546, 653
HpyCH4IV	ACGT	1 cut(s)	175
HpyCH4V	TGCA	7 cut(s)	231, 362, 419, 450, 659, 748, 778
HpyF10VI	GCNNNNNNNGC	5 cut(s)	108, 278, 386, 416, 754
HpyF3I	CTNAG	6 cut(s)	98, 107, 252, 297, 424, 761
HpySE526I	ACGT	1 cut(s)	175
Hsp92II	CATG	3 cut(s)	589, 611, 622
HspAI	GCGC	1 cut(s)	311
LmnI	GCTCC	2 cut(s)	269, 415
LpnPI	CCDG	8 cut(s)	83, 126, 217, 252, 554, 578, 605, 616
LweI	GCATC	2 cut(s)	349, 766
MaeI	CTAG	1 cut(s)	431
MaeII	ACGT	1 cut(s)	175
MaeIII	GTNAC	2 cut(s)	334, 701
MboII	GAAGA	3 cut(s)	388, 413, 518
MluCI	AATT	3 cut(s)	523, 557, 731
MlyI	GAGTC	2 cut(s)	526, 528
MnlI	CCTC	8 cut(s)	20, 116, 247, 252, 384, 433, 490, 597
MroXI	GAANNNNTTC	1 cut(s)	124
MseI	TTAA	1 cut(s)	351
MspI	CCGG	1 cut(s)	113
MspR9I	CCNGG	2 cut(s)	113, 593
MvaI	CCWGG	1 cut(s)	593
MwoI	GCNNNNNNNGC	5 cut(s)	108, 278, 386, 416, 754
NciI	CCSGG	1 cut(s)	113
NlaIII	CATG	3 cut(s)	589, 611, 622
NlaIV	GGNNCC	1 cut(s)	166
NmuCI	GTSAC	1 cut(s)	701
NspI	RCATGY	1 cut(s)	611
NspV	TTCGAA	1 cut(s)	399
PaqCI	CACCTGC	1 cut(s)	222
PceI	AGGCCT	1 cut(s)	241
PdmI	GAANNNNTTC	1 cut(s)	124
PfeI	GAWTC	2 cut(s)	293, 711
PfoI	TCCNGGA	1 cut(s)	591
PkrI	GCNGC	1 cut(s)	29
PleI	GAGTC	2 cut(s)	526, 527
PpsI	GAGTC	2 cut(s)	526, 527
PpuMI	RGGWCCY	1 cut(s)	345
Psp5II	RGGWCCY	1 cut(s)	345
Psp6I	CCWGG	1 cut(s)	591
PspFI	CCCAGC	1 cut(s)	69
PspGI	CCWGG	1 cut(s)	591
PspN4I	GGNNCC	1 cut(s)	166
PspPI	GGNCC	3 cut(s)	165, 345, 371
PspPPI	RGGWCCY	1 cut(s)	345
RsaI	GTAC	3 cut(s)	5, 67, 440
RsaNI	GTAC	3 cut(s)	4, 66, 439
SaqAI	TTAA	1 cut(s)	351
SatI	GCNGC	1 cut(s)	28
Sau96I	GGNCC	3 cut(s)	165, 345, 371
SchI	GAGTC	2 cut(s)	526, 528
ScrFI	CCNGG	2 cut(s)	113, 593
SfaNI	GCATC	2 cut(s)	349, 766
SfuI	TTCGAA	1 cut(s)	399
SinI	GGWCC	1 cut(s)	345
SmlI	CTYRAG	2 cut(s)	375, 536
SmoI	CTYRAG	2 cut(s)	375, 536
Sse9I	AATT	3 cut(s)	523, 557, 731
SseBI	AGGCCT	1 cut(s)	241
SsiI	CCGC	1 cut(s)	28
SspMI	CTAG	1 cut(s)	431
StuI	AGGCCT	1 cut(s)	241
StyD4I	CCNGG	2 cut(s)	111, 591
TaaI	ACNGT	3 cut(s)	65, 546, 653
TaiI	ACGT	1 cut(s)	178
TaqI	TCGA	3 cut(s)	134, 159, 399
TasI	AATT	3 cut(s)	523, 557, 731
TauI	GCSGC	1 cut(s)	30
TfiI	GAWTC	2 cut(s)	293, 711
Tru1I	TTAA	1 cut(s)	351
Tru9I	TTAA	1 cut(s)	351
TscAI	CASTG	1 cut(s)	256
TseFI	GTSAC	1 cut(s)	701
Tsp45I	GTSAC	1 cut(s)	701
TspDTI	ATGAA	3 cut(s)	117, 635, 639
TspGWI	ACGGA	1 cut(s)	518
TspRI	CASTG	1 cut(s)	256
VpaK11BI	GGWCC	1 cut(s)	345
XapI	RAATTY	1 cut(s)	731
XbaI	TCTAGA	1 cut(s)	430
XceI	RCATGY	1 cut(s)	611
XmnI	GAANNNNTTC	1 cut(s)	124
XspI	CTAG	1 cut(s)	431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.