Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0000871

Physical Location & Seq

Genomic Coordinates Forward (+)

16515915 .. 16519258

Gene Structure 3344 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG187600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGGTGAATCCTTGGAAAACATATGTGAAGCTCTCTGCTGTTCTTATGGGTTCTCATGGATTGACTAAGGGATCCTTGGCCTGGCTCAATTATCCTGCACAGATTATGTTCAAGTCCACAAAGGTCCTGCCAGTGATGGTGATGGGGGCATTTGTTCCTGGATTGAGAAGGAAATACCCAATTCATGAATACATATCTGCAATACTGCTAGTGATTGGTCTCATTATTTTCACATTAGCAGATGCAAACACATCTCCCAACTTCAGCATATTGGGTGTGGTGATGATATCAGGCGCTCTAATTATGGACGCTTTCCTTGGGAATGTACAAGAAGCAATCTTTACCATGAATCCTGACACCACACAGACAGAGATGTTGTTCTGCTCAACAGTAGTTGGGTTGCCAATGCTACTTCCACCTATGATTCTTACTGGAGAACTGTTTAGGGCCTGGAATTCTTGCGCTGAGCATCCTTATGTGTATGGGGTGTTGGTGTTTGAAGCCATCGCCACATTTGTTGGACAAGTATCTGTGCTATCCCTCATTGCACTTTTTGGAGCTGCCACCACTGCTATGGTTACAACTGCTAGAAAGGCGGTGACATTGTTGCTGTCGTACATAATATTCACAAAGCCAATGACAGAAGAGCATGGGACAGGGCTACTGCTCATAGCCATGGGAATCATACTGAAGATGGTGCCGGAAAACCAGGTTAACAAGCATGCAAAATCTTTCAAAGAAGTACTGATGAATGTCCCAGAAGCAAACGATATCGAGGAAGATGAAGAGAACAAGGCCTTGGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0006810 GO:0006811 GO:0006820 GO:0006862 GO:0008150 GO:0008509 GO:0008514 GO:0012505 GO:0015075 GO:0015215 GO:0015216 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015868 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0022857 GO:0030173 GO:0030176 GO:0031090 GO:0031224 GO:0031227 GO:0031228 GO:0031300 GO:0031301 GO:0031984 GO:0034220 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046963 GO:0046964 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0071702 GO:0071705 GO:0072348 GO:0072530 GO:0098588 GO:0098656 GO:0098791 GO:0098827 GO:1901264 GO:1901505 GO:1901679 GO:1901682 GO:1902559

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UAA

Protein Analysis

268

Amino Acids

29.29

Weight (kDa)

5.96

Isoelectric Point (pI)

26.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UAA	PF08449	2 - 233	1.3e-69	UAA transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000871)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12600 AT4G23010 AT4G23010 AT4G23010
fragaria_vesca	FvH4_5g01421 FvH4_5g01421 FvH4_7g12950 FvH4_7g12950 FvH4_7g12950
malus_domestica	MD02G1194900.v1.1 MD04G1068500.v1.1 MD07G1125700.v1.1
prunus_persica	Prupe.2G153800_v2.0.a1 Prupe.5G089700_v2.0.a1 Prupe.5G089700_v2.0.a1
pyrus_communis	pycom02g15880 pycom04g06180 pycom07g11930
rosa_chinensis	RchiOBHm_Chr0c16g0499921 RchiOBHm_Chr1g0347281 RchiOBHm_Chr1g0352081 RchiOBHm_Chr3g0455881 RchiOBHm_Chr4g0437881 RchiOBHm_Chr7g0199431
rosa_laevigata	RLG00000002748 RLG00000003793 RLG00000006404 RLG00000028361
rosa_multiflora	Rmu_sc0002453.1_g000013 Rmu_sc0002464.1_g000008 Rmu_sc0003781.1_g000011 Rmu_sc0008907.1_g000006 Rmu_sc0010560.1_g000004
rosa_roxburghii	Rroxscaffold_3G00256730 Rroxscaffold_4G00303280 Rroxscaffold_5G00361360
rosa_rugosa	Rorug01G0080000 Rorug01G0223900 Rorug01G0224000 Rorug01G0224100 Rorug02G0308800 Rorug02G0308900 Rorug02G0309000 Rorug02G0515400 Rorug04G0305100 Rorug06G0238700 Rorug06G0238800 Rorug06G0238900 Rorug06G0239000 Rorug07G0053800 Rorug07G0053900.1 Rorug07G0054000
rosa_samantha	Rh1CG222900 Rh4BG367900 Rh4CG154300 Rh4CG381900 Rh4DG362500 Rh6BG359000 Rh6DG293200 Rh7AG179000 Rh7CG187600 Rh7DG181900
rosa_wichuraiana	Rw0G011570 Rw1G020720 Rw5G045820 Rw7G015720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	697
AciI	CCGC	1 cut(s)	596
AclWI	GGATC	2 cut(s)	66, 79
AcsI	RAATTY	1 cut(s)	454
AcuI	CTGAAG	2 cut(s)	247, 710
AfaI	GTAC	3 cut(s)	327, 617, 744
AfiI	CCNNNNNNNGG	1 cut(s)	81
AgsI	TTSAA	3 cut(s)	112, 500, 736
AjnI	CCWGG	4 cut(s)	80, 157, 449, 708
AjuI	GAANNNNNNNTTGG	1 cut(s)	782
AluBI	AGCT	2 cut(s)	31, 560
AluI	AGCT	2 cut(s)	31, 560
Alw26I	GTCTC	1 cut(s)	224
AlwI	GGATC	2 cut(s)	66, 79
AoxI	GGCC	3 cut(s)	78, 447, 795
ApeKI	GCWGC	1 cut(s)	560
ApoI	RAATTY	1 cut(s)	454
AspLEI	GCGC	2 cut(s)	296, 464
AspS9I	GGNCC	2 cut(s)	124, 447
AsuHPI	GGTGA	4 cut(s)	16, 151, 292, 610
AvaII	GGWCC	1 cut(s)	124
BamHI	GGATCC	1 cut(s)	71
BanI	GGYRCC	1 cut(s)	697
BbvI	GCAGC	1 cut(s)	547
BccI	CCATC	4 cut(s)	130, 136, 512, 688
BciT130I	CCWGG	4 cut(s)	82, 159, 451, 710
BcoDI	GTCTC	1 cut(s)	224
BfaI	CTAG	2 cut(s)	209, 588
BfoI	RGCGCY	1 cut(s)	297
BisI	GCNGC	1 cut(s)	561
BlpI	GCTNAGC	1 cut(s)	465
BlsI	GCNGC	1 cut(s)	562
BmcAI	AGTACT	1 cut(s)	744
Bme1390I	CCNGG	4 cut(s)	82, 159, 451, 710
Bme18I	GGWCC	1 cut(s)	124
BmgT120I	GGNCC	2 cut(s)	124, 447
BmiI	GGNNCC	2 cut(s)	73, 699
BmrFI	CCNGG	4 cut(s)	82, 159, 451, 710
BmsI	GCATC	2 cut(s)	232, 478
BpmI	CTGGAG	1 cut(s)	453
Bpu1102I	GCTNAGC	1 cut(s)	465
BsaI	GGTCTC	1 cut(s)	224
BsaJI	CCNNGG	5 cut(s)	11, 75, 316, 675, 798
Bsc4I	CCNNNNNNNGG	1 cut(s)	81
Bse1I	ACTGG	2 cut(s)	131, 436
Bse3DI	GCAATG	1 cut(s)	543
BseBI	CCWGG	4 cut(s)	82, 159, 451, 710
BseDI	CCNNGG	5 cut(s)	11, 75, 316, 675, 798
BseGI	GGATG	1 cut(s)	469
BseLI	CCNNNNNNNGG	1 cut(s)	81
BseMI	GCAATG	1 cut(s)	543
BseMII	CTCAG	1 cut(s)	456
BseNI	ACTGG	2 cut(s)	131, 436
BseXI	GCAGC	1 cut(s)	547
BsgI	GTGCAG	1 cut(s)	81
BshFI	GGCC	3 cut(s)	80, 449, 797
BshNI	GGYRCC	1 cut(s)	697
BsiSI	CCGG	1 cut(s)	701
BslFI	GGGAC	2 cut(s)	667, 740
BslI	CCNNNNNNNGG	1 cut(s)	81
BsmAI	GTCTC	1 cut(s)	224
BsmFI	GGGAC	2 cut(s)	667, 740
BsnI	GGCC	3 cut(s)	80, 449, 797
Bso31I	GGTCTC	1 cut(s)	224
Bsp1407I	TGTACA	1 cut(s)	325
Bsp143I	GATC	1 cut(s)	71
Bsp1720I	GCTNAGC	1 cut(s)	465
Bsp19I	CCATGG	1 cut(s)	675
BspACI	CCGC	1 cut(s)	596
BspANI	GGCC	3 cut(s)	80, 449, 797
BspCNI	CTCAG	1 cut(s)	457
BspHI	TCATGA	1 cut(s)	184
BspLI	GGNNCC	2 cut(s)	73, 699
BspPI	GGATC	2 cut(s)	66, 79
BspQI	GCTCTTC	1 cut(s)	639
BspT107I	GGYRCC	1 cut(s)	697
BspTNI	GGTCTC	1 cut(s)	224
BsrDI	GCAATG	1 cut(s)	543
BsrGI	TGTACA	1 cut(s)	325
BsrI	ACTGG	2 cut(s)	131, 436
BssECI	CCNNGG	5 cut(s)	11, 75, 316, 675, 798
BssMI	GATC	1 cut(s)	71
BssT1I	CCWWGG	5 cut(s)	11, 75, 316, 675, 798
Bst2UI	CCWGG	4 cut(s)	82, 159, 451, 710
Bst4CI	ACNGT	2 cut(s)	391, 441
Bst6I	CTCTTC	2 cut(s)	639, 780
BstAUI	TGTACA	1 cut(s)	325
BstC8I	GCNNGC	1 cut(s)	723
BstDEI	CTNAG	2 cut(s)	66, 465
BstDSI	CCRYGG	1 cut(s)	675
BstF5I	GGATG	1 cut(s)	469
BstH2I	RGCGCY	1 cut(s)	297
BstHHI	GCGC	2 cut(s)	296, 464
BstKTI	GATC	1 cut(s)	74
BstMAI	GTCTC	1 cut(s)	224
BstMBI	GATC	1 cut(s)	71
BstMWI	GCNNNNNNNGC	2 cut(s)	569, 593
BstNI	CCWGG	4 cut(s)	82, 159, 451, 710
BstNSI	RCATGY	1 cut(s)	725
BstSCI	CCNGG	4 cut(s)	80, 157, 449, 708
BstV1I	GCAGC	1 cut(s)	547
BstX2I	RGATCY	1 cut(s)	71
BstXI	CCANNNNNNTGG	1 cut(s)	574
BstYI	RGATCY	1 cut(s)	71
BsuRI	GGCC	3 cut(s)	80, 449, 797
BtgI	CCRYGG	1 cut(s)	675
BtgZI	GCGATG	1 cut(s)	490
BtsCI	GGATG	1 cut(s)	469
BtsI	GCAGTG	1 cut(s)	567
BtsIMutI	CAGTG	2 cut(s)	138, 567
Cac8I	GCNNGC	1 cut(s)	723
CciI	TCATGA	1 cut(s)	184
CfoI	GCGC	2 cut(s)	296, 464
Cfr13I	GGNCC	2 cut(s)	124, 447
CseI	GACGC	1 cut(s)	317
CsiI	ACCWGGT	1 cut(s)	708
Csp6I	GTAC	3 cut(s)	326, 616, 743
CspCI	CAANNNNNGTGG	2 cut(s)	499, 534
CviAII	CATG	6 cut(s)	56, 185, 346, 650, 676, 722
CviQI	GTAC	3 cut(s)	326, 616, 743
DdeI	CTNAG	2 cut(s)	66, 465
DpnI	GATC	1 cut(s)	73
DpnII	GATC	1 cut(s)	71
Eam1104I	CTCTTC	2 cut(s)	639, 780
EarI	CTCTTC	2 cut(s)	639, 780
Eco130I	CCWWGG	5 cut(s)	11, 75, 316, 675, 798
Eco147I	AGGCCT	1 cut(s)	797
Eco31I	GGTCTC	1 cut(s)	224
Eco32I	GATATC	2 cut(s)	288, 772
Eco47I	GGWCC	1 cut(s)	124
Eco57I	CTGAAG	2 cut(s)	247, 710
EcoO109I	RGGNCCY	2 cut(s)	124, 447
EcoRI	GAATTC	1 cut(s)	454
EcoRII	CCWGG	4 cut(s)	80, 157, 449, 708
EcoRV	GATATC	2 cut(s)	288, 772
EcoT14I	CCWWGG	5 cut(s)	11, 75, 316, 675, 798
ErhI	CCWWGG	5 cut(s)	11, 75, 316, 675, 798
FaeI	CATG	6 cut(s)	59, 188, 349, 653, 679, 725
FalI	AAGNNNNNCTT	2 cut(s)	59, 91
FaqI	GGGAC	2 cut(s)	667, 740
FatI	CATG	6 cut(s)	55, 184, 345, 649, 675, 721
FauNDI	CATATG	1 cut(s)	22
Fnu4HI	GCNGC	1 cut(s)	561
FokI	GGATG	1 cut(s)	456
Fsp4HI	GCNGC	1 cut(s)	561
FspBI	CTAG	2 cut(s)	209, 588
GlaI	GCGC	2 cut(s)	295, 463
GluI	GCNGC	1 cut(s)	561
GsuI	CTGGAG	1 cut(s)	453
HaeII	RGCGCY	1 cut(s)	297
HaeIII	GGCC	3 cut(s)	80, 449, 797
HapII	CCGG	1 cut(s)	701
HgaI	GACGC	1 cut(s)	317
HhaI	GCGC	2 cut(s)	296, 464
Hin1II	CATG	6 cut(s)	59, 188, 349, 653, 679, 725
Hin6I	GCGC	2 cut(s)	294, 462
HinP1I	GCGC	2 cut(s)	294, 462
HincII	GTYRAC	1 cut(s)	715
HindII	GTYRAC	1 cut(s)	715
HinfI	GANTC	4 cut(s)	7, 349, 424, 681
HpaI	GTTAAC	1 cut(s)	715
HpaII	CCGG	1 cut(s)	701
HphI	GGTGA	4 cut(s)	16, 151, 292, 610
Hpy166II	GTNNAC	2 cut(s)	117, 715
Hpy188III	TCNNGA	2 cut(s)	185, 353
Hpy8I	GTNNAC	2 cut(s)	117, 715
HpyAV	CCTTC	1 cut(s)	162
HpyCH4III	ACNGT	2 cut(s)	391, 441
HpyCH4V	TGCA	5 cut(s)	98, 200, 245, 548, 725
HpyF10VI	GCNNNNNNNGC	2 cut(s)	569, 593
HpyF3I	CTNAG	2 cut(s)	66, 465
Hsp92II	CATG	6 cut(s)	59, 188, 349, 653, 679, 725
HspAI	GCGC	2 cut(s)	294, 462
KspAI	GTTAAC	1 cut(s)	715
Kzo9I	GATC	1 cut(s)	71
LguI	GCTCTTC	1 cut(s)	639
LmnI	GCTCC	1 cut(s)	557
Lsp1109I	GCAGC	1 cut(s)	547
LweI	GCATC	2 cut(s)	232, 478
MabI	ACCWGGT	1 cut(s)	708
MaeI	CTAG	2 cut(s)	209, 588
MaeIII	GTNAC	2 cut(s)	577, 598
MalI	GATC	1 cut(s)	73
MboI	GATC	1 cut(s)	71
MboII	GAAGA	4 cut(s)	656, 703, 791, 797
MflI	RGATCY	1 cut(s)	71
MluCI	AATT	4 cut(s)	88, 180, 300, 454
MmeI	TCCRAC	1 cut(s)	499
MnlI	CCTC	2 cut(s)	551, 769
MseI	TTAA	1 cut(s)	714
MslI	CAYNNNNRTG	3 cut(s)	474, 572, 674
MspI	CCGG	1 cut(s)	701
MspR9I	CCNGG	4 cut(s)	82, 159, 451, 710
MvaI	CCWGG	4 cut(s)	82, 159, 451, 710
MwoI	GCNNNNNNNGC	2 cut(s)	569, 593
NcoI	CCATGG	1 cut(s)	675
NdeI	CATATG	1 cut(s)	22
NdeII	GATC	1 cut(s)	71
NlaIII	CATG	6 cut(s)	59, 188, 349, 653, 679, 725
NlaIV	GGNNCC	2 cut(s)	73, 699
NmuCI	GTSAC	1 cut(s)	598
NspI	RCATGY	1 cut(s)	725
PaeI	GCATGC	1 cut(s)	725
PagI	TCATGA	1 cut(s)	184
PceI	AGGCCT	1 cut(s)	797
PciSI	GCTCTTC	1 cut(s)	639
PfeI	GAWTC	4 cut(s)	7, 349, 424, 681
PfoI	TCCNGGA	1 cut(s)	157
PkrI	GCNGC	1 cut(s)	562
PpuMI	RGGWCCY	1 cut(s)	124
Psp5II	RGGWCCY	1 cut(s)	124
Psp6I	CCWGG	4 cut(s)	80, 157, 449, 708
PspGI	CCWGG	4 cut(s)	80, 157, 449, 708
PspN4I	GGNNCC	2 cut(s)	73, 699
PspPI	GGNCC	2 cut(s)	124, 447
PspPPI	RGGWCCY	1 cut(s)	124
PsuI	RGATCY	1 cut(s)	71
RsaI	GTAC	3 cut(s)	327, 617, 744
RsaNI	GTAC	3 cut(s)	326, 616, 743
RseI	CAYNNNNRTG	3 cut(s)	474, 572, 674
SapI	GCTCTTC	1 cut(s)	639
SaqAI	TTAA	1 cut(s)	714
SatI	GCNGC	1 cut(s)	561
Sau3AI	GATC	1 cut(s)	71
Sau96I	GGNCC	2 cut(s)	124, 447
ScaI	AGTACT	1 cut(s)	744
ScrFI	CCNGG	4 cut(s)	82, 159, 451, 710
SetI	ASST	5 cut(s)	33, 126, 421, 562, 714
SexAI	ACCWGGT	1 cut(s)	708
SfaNI	GCATC	2 cut(s)	232, 478
SinI	GGWCC	1 cut(s)	124
SmiMI	CAYNNNNRTG	3 cut(s)	474, 572, 674
SphI	GCATGC	1 cut(s)	725
Sse9I	AATT	4 cut(s)	88, 180, 300, 454
SseBI	AGGCCT	1 cut(s)	797
SsiI	CCGC	1 cut(s)	596
SspI	AATATT	1 cut(s)	624
SspMI	CTAG	2 cut(s)	209, 588
StuI	AGGCCT	1 cut(s)	797
StyD4I	CCNGG	4 cut(s)	80, 157, 449, 708
StyI	CCWWGG	5 cut(s)	11, 75, 316, 675, 798
TaaI	ACNGT	2 cut(s)	391, 441
TaqI	TCGA	1 cut(s)	774
TasI	AATT	4 cut(s)	88, 180, 300, 454
TatI	WGTACW	2 cut(s)	325, 742
TfiI	GAWTC	4 cut(s)	7, 349, 424, 681
Tru1I	TTAA	1 cut(s)	714
Tru9I	TTAA	1 cut(s)	714
TscAI	CASTG	2 cut(s)	138, 574
TseFI	GTSAC	1 cut(s)	598
TseI	GCWGC	1 cut(s)	560
Tsp45I	GTSAC	1 cut(s)	598
TspDTI	ATGAA	5 cut(s)	173, 201, 362, 764, 798
TspRI	CASTG	2 cut(s)	138, 574
VpaK11BI	GGWCC	1 cut(s)	124
XapI	RAATTY	1 cut(s)	454
XceI	RCATGY	1 cut(s)	725
XcmI	CCANNNNNNNNNTGG	1 cut(s)	571
XspI	CTAG	2 cut(s)	209, 588
ZrmI	AGTACT	1 cut(s)	744

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.