Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0000871

Physical Location & Seq

Genomic Coordinates Reverse (-)

79833011 .. 79835712

Gene Structure 2702 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G045820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGAAGAACGAAGAACAAGCTCGGTTTTTGTTTGGGATTTCGCTCTCTGATAGACCCAAATGGCAGCAATTCCTGCTTTGCTCTTCTGGGTTCTTCTTTGGTTATCTGGTTAATGGTGTCTGTGAGGAATATGTGTATAACAGGCTACAATTCAGGATTTATGTATCTATTTCTGATTATCTTCAAGGCTTTACCACCAAGCAAATGGTAAACCCATGGAAGACTTATGTGAAGCTATCTGCTGTGCTTATGGGCTCTCATGGACTTACCAAAGGCTCCTTGGCTTTTCTCAACTACCCTGCACAGCTAATGTTCAAATCAACAAAGGTTTTGCCTGTGATGATAATGGGAGCCTTCATACCAGGTTTGAGGCGGAAGTACCCACCTCATGAGTACGTTTCTGCAATCCTTCTGGTGGTGGGTCTGATCCTATTCACCTTAGCGGATGCACAAACGTCTCCCAACTTCAGCGTGATTGGTGTGGTGATGGTATCGGGTGCTCTAGTCATGGATTCGTTTTTGGGTAATTTGCAAGAAGCAATATTTACCATGAATCCTGAAACCACACAGATGGAGATGTTGTTTTGCTCTATAGTAGTTGGTCTACCTTTCTCGGTGCCACCAATGATTTTGACAGGAGAATTATTCAAAGCGTGGAGTTCATGTTCTCAGCATCCATACGTATATGGTGTGTTAGTCTTTGAAGCCATGGCCACCTTTATTGGCCAAGTTTCTTCATCTAACTATAATACTTTAAGGACTAAAAGAACGAGAAAGCCATTGTCCAGCAAAACAACAAACAATGGTTTTTTTAAGAAATCTATAGTATCAATAAAAGATAGACAATGGGATTTGCAAGTACATATTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0006810 GO:0006811 GO:0006820 GO:0006862 GO:0008150 GO:0008509 GO:0008514 GO:0012505 GO:0015075 GO:0015215 GO:0015216 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015868 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0022857 GO:0030173 GO:0030176 GO:0031090 GO:0031224 GO:0031227 GO:0031228 GO:0031300 GO:0031301 GO:0031984 GO:0034220 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046963 GO:0046964 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0071702 GO:0071705 GO:0072348 GO:0072530 GO:0098588 GO:0098656 GO:0098791 GO:0098827 GO:1901264 GO:1901505 GO:1901679 GO:1901682 GO:1902559

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UAA

Protein Analysis

290

Amino Acids

32.7

Weight (kDa)

9.44

Isoelectric Point (pI)

30.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UAA	PF08449	23 - 244	3.8e-52	UAA transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000871)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12600 AT4G23010 AT4G23010 AT4G23010
fragaria_vesca	FvH4_5g01421 FvH4_5g01421 FvH4_7g12950 FvH4_7g12950 FvH4_7g12950
malus_domestica	MD02G1194900.v1.1 MD04G1068500.v1.1 MD07G1125700.v1.1
prunus_persica	Prupe.2G153800_v2.0.a1 Prupe.5G089700_v2.0.a1 Prupe.5G089700_v2.0.a1
pyrus_communis	pycom02g15880 pycom04g06180 pycom07g11930
rosa_chinensis	RchiOBHm_Chr0c16g0499921 RchiOBHm_Chr1g0347281 RchiOBHm_Chr1g0352081 RchiOBHm_Chr3g0455881 RchiOBHm_Chr4g0437881 RchiOBHm_Chr7g0199431
rosa_laevigata	RLG00000002748 RLG00000003793 RLG00000006404 RLG00000028361
rosa_multiflora	Rmu_sc0002453.1_g000013 Rmu_sc0002464.1_g000008 Rmu_sc0003781.1_g000011 Rmu_sc0008907.1_g000006 Rmu_sc0010560.1_g000004
rosa_roxburghii	Rroxscaffold_3G00256730 Rroxscaffold_4G00303280 Rroxscaffold_5G00361360
rosa_rugosa	Rorug01G0080000 Rorug01G0223900 Rorug01G0224000 Rorug01G0224100 Rorug02G0308800 Rorug02G0308900 Rorug02G0309000 Rorug02G0515400 Rorug04G0305100 Rorug06G0238700 Rorug06G0238800 Rorug06G0238900 Rorug06G0239000 Rorug07G0053800 Rorug07G0053900.1 Rorug07G0054000
rosa_samantha	Rh1CG222900 Rh4BG367900 Rh4CG154300 Rh4CG381900 Rh4DG362500 Rh6BG359000 Rh6DG293200 Rh7AG179000 Rh7CG187600 Rh7DG181900
rosa_wichuraiana	Rw0G011570 Rw1G020720 Rw5G045820 Rw7G015720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	616
AccI	GTMKAC	1 cut(s)	604
AciI	CCGC	2 cut(s)	373, 443
AclWI	GGATC	1 cut(s)	421
AcoI	YGGCCR	2 cut(s)	711, 724
AcuI	CTGAAG	1 cut(s)	451
AfaI	GTAC	3 cut(s)	380, 395, 861
AfiI	CCNNNNNNNGG	1 cut(s)	415
AgsI	TTSAA	4 cut(s)	185, 316, 649, 704
AjnI	CCWGG	1 cut(s)	361
AloI	GAACNNNNNNTCC	2 cut(s)	649, 681
AluBI	AGCT	3 cut(s)	20, 235, 307
AluI	AGCT	3 cut(s)	20, 235, 307
Alw21I	GWGCWC	1 cut(s)	502
Alw26I	GTCTC	1 cut(s)	462
AlwI	GGATC	1 cut(s)	421
AoxI	GGCC	2 cut(s)	711, 724
ApeKI	GCWGC	1 cut(s)	64
AsuHPI	GGTGA	2 cut(s)	427, 496
BalI	TGGCCA	2 cut(s)	713, 726
BanI	GGYRCC	1 cut(s)	616
BanII	GRGCYC	1 cut(s)	257
BbsI	GAAGAC	1 cut(s)	227
Bbv12I	GWGCWC	1 cut(s)	502
BbvI	GCAGC	1 cut(s)	76
BccI	CCATC	2 cut(s)	481, 565
BciT130I	CCWGG	1 cut(s)	363
BcoDI	GTCTC	1 cut(s)	462
BfaI	CTAG	1 cut(s)	503
BfmI	CTRYAG	2 cut(s)	591, 822
BisI	GCNGC	1 cut(s)	65
BlsI	GCNGC	1 cut(s)	66
Bme1390I	CCNGG	1 cut(s)	363
BmiI	GGNNCC	3 cut(s)	277, 352, 618
BmrFI	CCNGG	1 cut(s)	363
BmsI	GCATC	2 cut(s)	436, 682
BpiI	GAAGAC	1 cut(s)	227
Bpu10I	CCTNAGC	1 cut(s)	439
BsaAI	YACGTR	1 cut(s)	682
BsaJI	CCNNGG	3 cut(s)	215, 279, 708
BsaXI	ACNNNNNCTCC	4 cut(s)	566, 596, 649, 679
Bsc4I	CCNNNNNNNGG	1 cut(s)	415
BseBI	CCWGG	1 cut(s)	363
BseDI	CCNNGG	3 cut(s)	215, 279, 708
BseGI	GGATG	2 cut(s)	451, 673
BseLI	CCNNNNNNNGG	1 cut(s)	415
BseMII	CTCAG	1 cut(s)	683
BseXI	GCAGC	1 cut(s)	76
BsgI	GTGCAG	1 cut(s)	285
BshFI	GGCC	2 cut(s)	713, 726
BshNI	GGYRCC	1 cut(s)	616
BsiHKAI	GWGCWC	1 cut(s)	502
BslI	CCNNNNNNNGG	1 cut(s)	415
BsmAI	GTCTC	1 cut(s)	462
BsmBI	CGTCTC	1 cut(s)	462
BsnI	GGCC	2 cut(s)	713, 726
Bsp1286I	GDGCHC	2 cut(s)	257, 502
Bsp143I	GATC	1 cut(s)	426
Bsp19I	CCATGG	2 cut(s)	215, 708
BspACI	CCGC	2 cut(s)	373, 443
BspANI	GGCC	2 cut(s)	713, 726
BspCNI	CTCAG	1 cut(s)	682
BspHI	TCATGA	1 cut(s)	388
BspLI	GGNNCC	3 cut(s)	277, 352, 618
BspPI	GGATC	1 cut(s)	421
BspQI	GCTCTTC	1 cut(s)	88
BspT107I	GGYRCC	1 cut(s)	616
BssECI	CCNNGG	3 cut(s)	215, 279, 708
BssMI	GATC	1 cut(s)	426
BssT1I	CCWWGG	3 cut(s)	215, 279, 708
Bst2UI	CCWGG	1 cut(s)	363
Bst6I	CTCTTC	1 cut(s)	88
BstAPI	GCANNNNNTGC	1 cut(s)	73
BstBAI	YACGTR	1 cut(s)	682
BstDEI	CTNAG	2 cut(s)	439, 669
BstDSI	CCRYGG	2 cut(s)	215, 708
BstF5I	GGATG	2 cut(s)	451, 673
BstKTI	GATC	1 cut(s)	429
BstMAI	GTCTC	1 cut(s)	462
BstMBI	GATC	1 cut(s)	426
BstMWI	GCNNNNNNNGC	1 cut(s)	73
BstNI	CCWGG	1 cut(s)	363
BstSCI	CCNGG	1 cut(s)	361
BstSFI	CTRYAG	2 cut(s)	591, 822
BstSNI	TACGTA	1 cut(s)	682
BstV1I	GCAGC	1 cut(s)	76
BstV2I	GAAGAC	1 cut(s)	227
BstXI	CCANNNNNNTGG	2 cut(s)	205, 571
BsuRI	GGCC	2 cut(s)	713, 726
BtgI	CCRYGG	2 cut(s)	215, 708
BtsCI	GGATG	2 cut(s)	451, 673
CciI	TCATGA	1 cut(s)	388
CsiI	ACCWGGT	1 cut(s)	361
Csp6I	GTAC	3 cut(s)	379, 394, 860
CspCI	CAANNNNNGTGG	2 cut(s)	703, 738
CviAII	CATG	7 cut(s)	216, 260, 389, 508, 550, 663, 709
CviQI	GTAC	3 cut(s)	379, 394, 860
DdeI	CTNAG	2 cut(s)	439, 669
DpnI	GATC	1 cut(s)	428
DpnII	GATC	1 cut(s)	426
EaeI	YGGCCR	2 cut(s)	711, 724
Eam1104I	CTCTTC	1 cut(s)	88
EarI	CTCTTC	1 cut(s)	88
EciI	GGCGGA	1 cut(s)	388
Eco105I	TACGTA	1 cut(s)	682
Eco130I	CCWWGG	3 cut(s)	215, 279, 708
Eco24I	GRGCYC	1 cut(s)	257
Eco57I	CTGAAG	1 cut(s)	451
EcoRII	CCWGG	1 cut(s)	361
EcoT14I	CCWWGG	3 cut(s)	215, 279, 708
EcoT38I	GRGCYC	1 cut(s)	257
ErhI	CCWWGG	3 cut(s)	215, 279, 708
Esp3I	CGTCTC	1 cut(s)	462
FaeI	CATG	7 cut(s)	219, 263, 392, 511, 553, 666, 712
FatI	CATG	7 cut(s)	215, 259, 388, 507, 549, 662, 708
FblI	GTMKAC	1 cut(s)	604
Fnu4HI	GCNGC	1 cut(s)	65
FokI	GGATG	2 cut(s)	458, 660
FriOI	GRGCYC	1 cut(s)	257
Fsp4HI	GCNGC	1 cut(s)	65
FspBI	CTAG	1 cut(s)	503
GluI	GCNGC	1 cut(s)	65
HaeIII	GGCC	2 cut(s)	713, 726
Hin1II	CATG	7 cut(s)	219, 263, 392, 511, 553, 666, 712
HinfI	GANTC	2 cut(s)	512, 553
HphI	GGTGA	2 cut(s)	427, 496
Hpy166II	GTNNAC	2 cut(s)	211, 605
Hpy188I	TCNGA	4 cut(s)	49, 175, 426, 872
Hpy188III	TCNNGA	3 cut(s)	154, 389, 557
Hpy8I	GTNNAC	2 cut(s)	211, 605
HpyAV	CCTTC	2 cut(s)	364, 419
HpyCH4IV	ACGT	3 cut(s)	396, 455, 681
HpyCH4V	TGCA	5 cut(s)	302, 404, 449, 532, 856
HpyF10VI	GCNNNNNNNGC	1 cut(s)	73
HpyF3I	CTNAG	2 cut(s)	439, 669
HpySE526I	ACGT	3 cut(s)	396, 455, 681
Hsp92II	CATG	7 cut(s)	219, 263, 392, 511, 553, 666, 712
Kzo9I	GATC	1 cut(s)	426
LguI	GCTCTTC	1 cut(s)	88
LmnI	GCTCC	2 cut(s)	281, 350
Lsp1109I	GCAGC	1 cut(s)	76
LweI	GCATC	2 cut(s)	436, 682
MabI	ACCWGGT	1 cut(s)	361
MaeI	CTAG	1 cut(s)	503
MaeII	ACGT	3 cut(s)	396, 455, 681
MalI	GATC	1 cut(s)	428
MboI	GATC	1 cut(s)	426
MboII	GAAGA	7 cut(s)	16, 23, 75, 85, 173, 232, 726
MhlI	GDGCHC	2 cut(s)	257, 502
MlsI	TGGCCA	2 cut(s)	713, 726
MluCI	AATT	4 cut(s)	68, 149, 526, 641
MluNI	TGGCCA	2 cut(s)	713, 726
MnlI	CCTC	3 cut(s)	118, 363, 396
Mox20I	TGGCCA	2 cut(s)	713, 726
MscI	TGGCCA	2 cut(s)	713, 726
MseI	TTAA	3 cut(s)	111, 755, 813
MslI	CAYNNNNRTG	1 cut(s)	569
Msp20I	TGGCCA	2 cut(s)	713, 726
MspR9I	CCNGG	1 cut(s)	363
MvaI	CCWGG	1 cut(s)	363
MwoI	GCNNNNNNNGC	1 cut(s)	73
NcoI	CCATGG	2 cut(s)	215, 708
NdeII	GATC	1 cut(s)	426
NlaIII	CATG	7 cut(s)	219, 263, 392, 511, 553, 666, 712
NlaIV	GGNNCC	3 cut(s)	277, 352, 618
PagI	TCATGA	1 cut(s)	388
PciSI	GCTCTTC	1 cut(s)	88
PfeI	GAWTC	2 cut(s)	512, 553
PkrI	GCNGC	1 cut(s)	66
Ppu21I	YACGTR	1 cut(s)	682
Psp6I	CCWGG	1 cut(s)	361
PspGI	CCWGG	1 cut(s)	361
PspN4I	GGNNCC	3 cut(s)	277, 352, 618
RsaI	GTAC	3 cut(s)	380, 395, 861
RsaNI	GTAC	3 cut(s)	379, 394, 860
RseI	CAYNNNNRTG	1 cut(s)	569
SapI	GCTCTTC	1 cut(s)	88
SaqAI	TTAA	3 cut(s)	111, 755, 813
SatI	GCNGC	1 cut(s)	65
Sau3AI	GATC	1 cut(s)	426
ScrFI	CCNGG	1 cut(s)	363
SduI	GDGCHC	2 cut(s)	257, 502
SexAI	ACCWGGT	1 cut(s)	361
SfaNI	GCATC	2 cut(s)	436, 682
SfcI	CTRYAG	2 cut(s)	591, 822
SmiMI	CAYNNNNRTG	1 cut(s)	569
SnaBI	TACGTA	1 cut(s)	682
Sse9I	AATT	4 cut(s)	68, 149, 526, 641
SsiI	CCGC	2 cut(s)	373, 443
SspI	AATATT	1 cut(s)	543
SspMI	CTAG	1 cut(s)	503
StyD4I	CCNGG	1 cut(s)	361
StyI	CCWWGG	3 cut(s)	215, 279, 708
TaiI	ACGT	3 cut(s)	399, 458, 684
TasI	AATT	4 cut(s)	68, 149, 526, 641
TatI	WGTACW	1 cut(s)	859
TfiI	GAWTC	2 cut(s)	512, 553
Tru1I	TTAA	3 cut(s)	111, 755, 813
Tru9I	TTAA	3 cut(s)	111, 755, 813
TseI	GCWGC	1 cut(s)	64
TspDTI	ATGAA	5 cut(s)	17, 346, 566, 651, 726
XcmI	CCANNNNNNNNNTGG	2 cut(s)	202, 277
XmiI	GTMKAC	1 cut(s)	604
XspI	CTAG	1 cut(s)	503

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.