Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0000871

Physical Location & Seq

Genomic Coordinates Forward (+)

33898181 .. 33900578

Gene Structure 2398 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG154300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGTAAACCCATGGAAGACTTATGTGAAGCTATCTGCTGTGCTTATGGGCTCTCATGGACTTACCAAAGGCTCCTTGGCTTTTCTCAACTACCCTGCACAGCTAATGTTCAAATCAACAAAGGTTTTGCCTGTGATGATAATGGGAGCCTTCATACCAGGTTTGAGGCGGAAGTACCCACCTCATGAGTACGTTTCTGCAATCCTTCTGGTGGTGGGTCTGATCCTATTCACCTTAGCGGATGCACAAACGTCTCCCAACTTCAGCGTGATTGGTGTGGTGATGGTATCGGGTGCTCTAGTCATGGATTCGTTTTTGGGTAATTTGCAAGAAGCAATATTTACCATGAATCCTGAAACCACACAGATGGAGATGTTGTTTTGCTCTACAATAGTTGGTCTACCTTTCTTGGTGCCACCAATGATTTTGACAGGAGAATTATTCAAAGCGTGGAGTTCATGTTCTCAGCATCCATACGTATATGGTGTGTTAGTCTTTGAAGCCATGGCCACCTTTATTGGCCAAGTTTCTGTCCTTTCCCTCAATTATCTTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0006810 GO:0006811 GO:0006820 GO:0006862 GO:0008150 GO:0008509 GO:0008514 GO:0012505 GO:0015075 GO:0015215 GO:0015216 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015868 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0022857 GO:0030173 GO:0030176 GO:0031090 GO:0031224 GO:0031227 GO:0031228 GO:0031300 GO:0031301 GO:0031984 GO:0034220 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046963 GO:0046964 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0071702 GO:0071705 GO:0072348 GO:0072530 GO:0098588 GO:0098656 GO:0098791 GO:0098827 GO:1901264 GO:1901505 GO:1901679 GO:1901682 GO:1902559

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UAA

Protein Analysis

185

Amino Acids

20.25

Weight (kDa)

7.77

Isoelectric Point (pI)

27.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UAA	PF08449	2 - 182	1.6e-48	UAA transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000871)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12600 AT4G23010 AT4G23010 AT4G23010
fragaria_vesca	FvH4_5g01421 FvH4_5g01421 FvH4_7g12950 FvH4_7g12950 FvH4_7g12950
malus_domestica	MD02G1194900.v1.1 MD04G1068500.v1.1 MD07G1125700.v1.1
prunus_persica	Prupe.2G153800_v2.0.a1 Prupe.5G089700_v2.0.a1 Prupe.5G089700_v2.0.a1
pyrus_communis	pycom02g15880 pycom04g06180 pycom07g11930
rosa_chinensis	RchiOBHm_Chr0c16g0499921 RchiOBHm_Chr1g0347281 RchiOBHm_Chr1g0352081 RchiOBHm_Chr3g0455881 RchiOBHm_Chr4g0437881 RchiOBHm_Chr7g0199431
rosa_laevigata	RLG00000002748 RLG00000003793 RLG00000006404 RLG00000028361
rosa_multiflora	Rmu_sc0002453.1_g000013 Rmu_sc0002464.1_g000008 Rmu_sc0003781.1_g000011 Rmu_sc0008907.1_g000006 Rmu_sc0010560.1_g000004
rosa_roxburghii	Rroxscaffold_3G00256730 Rroxscaffold_4G00303280 Rroxscaffold_5G00361360
rosa_rugosa	Rorug01G0080000 Rorug01G0223900 Rorug01G0224000 Rorug01G0224100 Rorug02G0308800 Rorug02G0308900 Rorug02G0309000 Rorug02G0515400 Rorug04G0305100 Rorug06G0238700 Rorug06G0238800 Rorug06G0238900 Rorug06G0239000 Rorug07G0053800 Rorug07G0053900.1 Rorug07G0054000
rosa_samantha	Rh1CG222900 Rh4BG367900 Rh4CG154300 Rh4CG381900 Rh4DG362500 Rh6BG359000 Rh6DG293200 Rh7AG179000 Rh7CG187600 Rh7DG181900
rosa_wichuraiana	Rw0G011570 Rw1G020720 Rw5G045820 Rw7G015720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	412
AccI	GTMKAC	1 cut(s)	400
AciI	CCGC	2 cut(s)	169, 239
AclWI	GGATC	1 cut(s)	217
AcoI	YGGCCR	2 cut(s)	507, 520
AcuI	CTGAAG	1 cut(s)	247
AfaI	GTAC	2 cut(s)	176, 191
AfiI	CCNNNNNNNGG	1 cut(s)	211
AgsI	TTSAA	3 cut(s)	112, 445, 500
AjnI	CCWGG	1 cut(s)	157
AloI	GAACNNNNNNTCC	2 cut(s)	445, 477
AluBI	AGCT	2 cut(s)	31, 103
AluI	AGCT	2 cut(s)	31, 103
Alw21I	GWGCWC	1 cut(s)	298
Alw26I	GTCTC	1 cut(s)	258
AlwI	GGATC	1 cut(s)	217
AoxI	GGCC	2 cut(s)	507, 520
AsuHPI	GGTGA	2 cut(s)	223, 292
BalI	TGGCCA	2 cut(s)	509, 522
BanI	GGYRCC	1 cut(s)	412
BanII	GRGCYC	1 cut(s)	53
BbsI	GAAGAC	1 cut(s)	23
Bbv12I	GWGCWC	1 cut(s)	298
BccI	CCATC	2 cut(s)	277, 361
BciT130I	CCWGG	1 cut(s)	159
BcoDI	GTCTC	1 cut(s)	258
BfaI	CTAG	1 cut(s)	299
Bme1390I	CCNGG	1 cut(s)	159
BmiI	GGNNCC	3 cut(s)	73, 148, 414
BmrFI	CCNGG	1 cut(s)	159
BmsI	GCATC	2 cut(s)	232, 478
BpiI	GAAGAC	1 cut(s)	23
Bpu10I	CCTNAGC	1 cut(s)	235
BsaAI	YACGTR	1 cut(s)	478
BsaJI	CCNNGG	3 cut(s)	11, 75, 504
BsaXI	ACNNNNNCTCC	4 cut(s)	362, 392, 445, 475
Bsc4I	CCNNNNNNNGG	1 cut(s)	211
BseBI	CCWGG	1 cut(s)	159
BseDI	CCNNGG	3 cut(s)	11, 75, 504
BseGI	GGATG	2 cut(s)	247, 469
BseLI	CCNNNNNNNGG	1 cut(s)	211
BseMII	CTCAG	1 cut(s)	479
BsgI	GTGCAG	1 cut(s)	81
BshFI	GGCC	2 cut(s)	509, 522
BshNI	GGYRCC	1 cut(s)	412
BsiHKAI	GWGCWC	1 cut(s)	298
BslI	CCNNNNNNNGG	1 cut(s)	211
BsmAI	GTCTC	1 cut(s)	258
BsmBI	CGTCTC	1 cut(s)	258
BsnI	GGCC	2 cut(s)	509, 522
Bsp1286I	GDGCHC	2 cut(s)	53, 298
Bsp143I	GATC	1 cut(s)	222
Bsp19I	CCATGG	2 cut(s)	11, 504
BspACI	CCGC	2 cut(s)	169, 239
BspANI	GGCC	2 cut(s)	509, 522
BspCNI	CTCAG	1 cut(s)	478
BspHI	TCATGA	1 cut(s)	184
BspLI	GGNNCC	3 cut(s)	73, 148, 414
BspPI	GGATC	1 cut(s)	217
BspT107I	GGYRCC	1 cut(s)	412
BssECI	CCNNGG	3 cut(s)	11, 75, 504
BssMI	GATC	1 cut(s)	222
BssT1I	CCWWGG	3 cut(s)	11, 75, 504
Bst2UI	CCWGG	1 cut(s)	159
BstBAI	YACGTR	1 cut(s)	478
BstDEI	CTNAG	2 cut(s)	235, 465
BstDSI	CCRYGG	2 cut(s)	11, 504
BstF5I	GGATG	2 cut(s)	247, 469
BstKTI	GATC	1 cut(s)	225
BstMAI	GTCTC	1 cut(s)	258
BstMBI	GATC	1 cut(s)	222
BstNI	CCWGG	1 cut(s)	159
BstSCI	CCNGG	1 cut(s)	157
BstSNI	TACGTA	1 cut(s)	478
BstV2I	GAAGAC	1 cut(s)	23
BstXI	CCANNNNNNTGG	1 cut(s)	367
BsuRI	GGCC	2 cut(s)	509, 522
BtgI	CCRYGG	2 cut(s)	11, 504
BtsCI	GGATG	2 cut(s)	247, 469
CciI	TCATGA	1 cut(s)	184
CsiI	ACCWGGT	1 cut(s)	157
Csp6I	GTAC	2 cut(s)	175, 190
CspCI	CAANNNNNGTGG	2 cut(s)	499, 534
CviAII	CATG	7 cut(s)	12, 56, 185, 304, 346, 459, 505
CviJI	RGCY	9 cut(s)	31, 51, 72, 80, 103, 149, 503, 509, 522
CviKI_1	RGCY	9 cut(s)	31, 51, 72, 80, 103, 149, 503, 509, 522
CviQI	GTAC	2 cut(s)	175, 190
DdeI	CTNAG	2 cut(s)	235, 465
DpnI	GATC	1 cut(s)	224
DpnII	GATC	1 cut(s)	222
EaeI	YGGCCR	2 cut(s)	507, 520
EciI	GGCGGA	1 cut(s)	184
Eco105I	TACGTA	1 cut(s)	478
Eco130I	CCWWGG	3 cut(s)	11, 75, 504
Eco24I	GRGCYC	1 cut(s)	53
Eco57I	CTGAAG	1 cut(s)	247
EcoRII	CCWGG	1 cut(s)	157
EcoT14I	CCWWGG	3 cut(s)	11, 75, 504
EcoT38I	GRGCYC	1 cut(s)	53
ErhI	CCWWGG	3 cut(s)	11, 75, 504
Esp3I	CGTCTC	1 cut(s)	258
FaeI	CATG	7 cut(s)	15, 59, 188, 307, 349, 462, 508
FatI	CATG	7 cut(s)	11, 55, 184, 303, 345, 458, 504
FblI	GTMKAC	1 cut(s)	400
FokI	GGATG	2 cut(s)	254, 456
FriOI	GRGCYC	1 cut(s)	53
FspBI	CTAG	1 cut(s)	299
HaeIII	GGCC	2 cut(s)	509, 522
Hin1II	CATG	7 cut(s)	15, 59, 188, 307, 349, 462, 508
HinfI	GANTC	2 cut(s)	308, 349
HphI	GGTGA	2 cut(s)	223, 292
Hpy166II	GTNNAC	2 cut(s)	7, 401
Hpy188I	TCNGA	1 cut(s)	222
Hpy188III	TCNNGA	3 cut(s)	185, 353, 555
Hpy8I	GTNNAC	2 cut(s)	7, 401
HpyAV	CCTTC	2 cut(s)	160, 215
HpyCH4IV	ACGT	3 cut(s)	192, 251, 477
HpyCH4V	TGCA	4 cut(s)	98, 200, 245, 328
HpyF3I	CTNAG	2 cut(s)	235, 465
HpySE526I	ACGT	3 cut(s)	192, 251, 477
Hsp92II	CATG	7 cut(s)	15, 59, 188, 307, 349, 462, 508
Kzo9I	GATC	1 cut(s)	222
LmnI	GCTCC	2 cut(s)	77, 146
LpnPI	CCDG	7 cut(s)	108, 144, 144, 171, 194, 366, 417
LweI	GCATC	2 cut(s)	232, 478
MabI	ACCWGGT	1 cut(s)	157
MaeI	CTAG	1 cut(s)	299
MaeII	ACGT	3 cut(s)	192, 251, 477
MalI	GATC	1 cut(s)	224
MboI	GATC	1 cut(s)	222
MboII	GAAGA	1 cut(s)	28
MhlI	GDGCHC	2 cut(s)	53, 298
MlsI	TGGCCA	2 cut(s)	509, 522
MluCI	AATT	3 cut(s)	322, 437, 544
MluNI	TGGCCA	2 cut(s)	509, 522
MnlI	CCTC	3 cut(s)	159, 192, 551
Mox20I	TGGCCA	2 cut(s)	509, 522
MscI	TGGCCA	2 cut(s)	509, 522
MslI	CAYNNNNRTG	1 cut(s)	365
Msp20I	TGGCCA	2 cut(s)	509, 522
MspR9I	CCNGG	1 cut(s)	159
MvaI	CCWGG	1 cut(s)	159
NcoI	CCATGG	2 cut(s)	11, 504
NdeII	GATC	1 cut(s)	222
NlaIII	CATG	7 cut(s)	15, 59, 188, 307, 349, 462, 508
NlaIV	GGNNCC	3 cut(s)	73, 148, 414
PagI	TCATGA	1 cut(s)	184
PfeI	GAWTC	2 cut(s)	308, 349
Ppu21I	YACGTR	1 cut(s)	478
Psp6I	CCWGG	1 cut(s)	157
PspGI	CCWGG	1 cut(s)	157
PspN4I	GGNNCC	3 cut(s)	73, 148, 414
RsaI	GTAC	2 cut(s)	176, 191
RsaNI	GTAC	2 cut(s)	175, 190
RseI	CAYNNNNRTG	1 cut(s)	365
Sau3AI	GATC	1 cut(s)	222
ScrFI	CCNGG	1 cut(s)	159
SduI	GDGCHC	2 cut(s)	53, 298
SexAI	ACCWGGT	1 cut(s)	157
SfaNI	GCATC	2 cut(s)	232, 478
SmiMI	CAYNNNNRTG	1 cut(s)	365
SnaBI	TACGTA	1 cut(s)	478
Sse9I	AATT	3 cut(s)	322, 437, 544
SsiI	CCGC	2 cut(s)	169, 239
SspI	AATATT	1 cut(s)	339
SspMI	CTAG	1 cut(s)	299
StyD4I	CCNGG	1 cut(s)	157
StyI	CCWWGG	3 cut(s)	11, 75, 504
TaiI	ACGT	3 cut(s)	195, 254, 480
TasI	AATT	3 cut(s)	322, 437, 544
TfiI	GAWTC	2 cut(s)	308, 349
TspDTI	ATGAA	3 cut(s)	142, 362, 447
XcmI	CCANNNNNNNNNTGG	1 cut(s)	73
XmiI	GTMKAC	1 cut(s)	400
XspI	CTAG	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.