Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0000871

Physical Location & Seq

Genomic Coordinates Forward (+)

6129810 .. 6132469

Gene Structure 2660 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g06180.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGAAGAACGAGGACGACGAGAGGTTCTTGTTTGGGATTTCACTGTCTGATAGGCCGAGGTGGCAGCAGTTCATCATTTGCTCTTCTGGCTTCTTCTTTGGTTACCTTGTCAATGGCATCTGCGAGGAATACGTGTATAATCGTCTCGAATTCAGCTATGGATGGTACTTCACTTTTGTACAAGGGTTTGTGTATATTGCGCTAATGTACCTTCAAGGCTTCACCCCTAAGAAAATGGTGAATCCATGGAAGACGTATGTGAAGCTCTCCGCCGTTCTTATGGGTTCTCAAGGACTGACCAAGGGATCCTTGGCATGGCTTAATTACCCTGCACAGATAATGTTCAAATCCACAAAGGTACTACCGGTGATGGTGATGGGTGCATTTGTTCCGGGATTGAGAAGGAAATACCCGATTCAGGAATACATCTCGGCAATGCTTCTAGTAATTGGTTTGATCCTTTTCACCTTAGCAGATGCAAAAACATCTCCCAATTTTAGCATGGCTGGTGTGATAATGATATCTGGTGCTCTAATCATGGATGCCTTTTTGGGTAACTTGCAAGAAGCAATTTTTACCTTGAATCCTGGTACCACACAGACAGAGATGTTGTTCTGCTCAACAGTAGTTGGGTTGCCATTTTTGCTTCCACCCATGATTCTTACAGGAGAATTGGTTAAGGCCTGGAATTCTTGTTATGAGCATCCTTATGTGTACGGGGTTTTAGTGTTTGAAGCCCTAGCAACATACGTTGGACAAGTATCTGTGCTATCCCTCATTGCCCTTTTCGGAGCTGCCACCACTGCTATGATTACAACGGCTAGAAAGGCGGTCACATTGTTGCTGTCATACATGATATTTACGAAGCCCTTGACAGGCCAACACGGGACAGGGCTGCTGCTGATAGCCATGGGAATCACAATGAAGATGCTTCCCGAAAACAAAGTCCCCGGTCGGAGTGTGATCTCTCATACTGTTGCCAAATATGCAAAATCTTTCAAGCTAGGGAAGAGGAAAACAGAAAATGAAACCGAAGAGTTTCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0006810 GO:0006811 GO:0006820 GO:0006862 GO:0008150 GO:0008509 GO:0008514 GO:0012505 GO:0015075 GO:0015215 GO:0015216 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015868 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0022857 GO:0030173 GO:0030176 GO:0031090 GO:0031224 GO:0031227 GO:0031228 GO:0031300 GO:0031301 GO:0031984 GO:0034220 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046963 GO:0046964 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0071702 GO:0071705 GO:0072348 GO:0072530 GO:0098588 GO:0098656 GO:0098791 GO:0098827 GO:1901264 GO:1901505 GO:1901679 GO:1901682 GO:1902559

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UAA

Protein Analysis

349

Amino Acids

38.86

Weight (kDa)

9.16

Isoelectric Point (pI)

30.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000871)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12600 AT4G23010 AT4G23010 AT4G23010
fragaria_vesca	FvH4_5g01421 FvH4_5g01421 FvH4_7g12950 FvH4_7g12950 FvH4_7g12950
malus_domestica	MD02G1194900.v1.1 MD04G1068500.v1.1 MD07G1125700.v1.1
prunus_persica	Prupe.2G153800_v2.0.a1 Prupe.5G089700_v2.0.a1 Prupe.5G089700_v2.0.a1
pyrus_communis	pycom02g15880 pycom04g06180 pycom07g11930
rosa_chinensis	RchiOBHm_Chr0c16g0499921 RchiOBHm_Chr1g0347281 RchiOBHm_Chr1g0352081 RchiOBHm_Chr3g0455881 RchiOBHm_Chr4g0437881 RchiOBHm_Chr7g0199431
rosa_laevigata	RLG00000002748 RLG00000003793 RLG00000006404 RLG00000028361
rosa_multiflora	Rmu_sc0002453.1_g000013 Rmu_sc0002464.1_g000008 Rmu_sc0003781.1_g000011 Rmu_sc0008907.1_g000006 Rmu_sc0010560.1_g000004
rosa_roxburghii	Rroxscaffold_3G00256730 Rroxscaffold_4G00303280 Rroxscaffold_5G00361360
rosa_rugosa	Rorug01G0080000 Rorug01G0223900 Rorug01G0224000 Rorug01G0224100 Rorug02G0308800 Rorug02G0308900 Rorug02G0309000 Rorug02G0515400 Rorug04G0305100 Rorug06G0238700 Rorug06G0238800 Rorug06G0238900 Rorug06G0239000 Rorug07G0053800 Rorug07G0053900.1 Rorug07G0054000
rosa_samantha	Rh1CG222900 Rh4BG367900 Rh4CG154300 Rh4CG381900 Rh4DG362500 Rh6BG359000 Rh6DG293200 Rh7AG179000 Rh7CG187600 Rh7DG181900
rosa_wichuraiana	Rw0G011570 Rw1G020720 Rw5G045820 Rw7G015720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	590
AccB1I	GGYRCC	1 cut(s)	590
AciI	CCGC	2 cut(s)	270, 830
AclWI	GGATC	3 cut(s)	300, 313, 451
AcsI	RAATTY	2 cut(s)	149, 688
AfaI	GTAC	6 cut(s)	167, 180, 209, 360, 592, 716
AfiI	CCNNNNNNNGG	3 cut(s)	315, 418, 875
AflIII	ACRYGT	1 cut(s)	132
AgeI	ACCGGT	1 cut(s)	364
AgsI	TTSAA	6 cut(s)	215, 346, 583, 734, 1000, 1043
AjnI	CCWGG	2 cut(s)	586, 683
AluBI	AGCT	4 cut(s)	156, 265, 794, 1003
AluI	AGCT	4 cut(s)	156, 265, 794, 1003
Alw21I	GWGCWC	1 cut(s)	532
Alw26I	GTCTC	1 cut(s)	149
AlwI	GGATC	3 cut(s)	300, 313, 451
AoxI	GGCC	3 cut(s)	53, 681, 877
ApeKI	GCWGC	4 cut(s)	64, 794, 895, 898
ApoI	RAATTY	2 cut(s)	149, 688
ArsI	GACNNNNNNTTYG	2 cut(s)	930, 962
AsiGI	ACCGGT	1 cut(s)	364
Asp700I	GAANNNNTTC	1 cut(s)	1038
Asp718I	GGTACC	1 cut(s)	590
AspLEI	GCGC	1 cut(s)	202
AsuC2I	CCSGG	2 cut(s)	393, 951
AsuHPI	GGTGA	5 cut(s)	214, 250, 379, 385, 457
BamHI	GGATCC	1 cut(s)	305
BanI	GGYRCC	1 cut(s)	590
BbsI	GAAGAC	1 cut(s)	257
Bbv12I	GWGCWC	1 cut(s)	532
BbvI	GCAGC	4 cut(s)	76, 781, 882, 885
BccI	CCATC	3 cut(s)	156, 364, 370
BceAI	ACGGC	2 cut(s)	257, 834
BciT130I	CCWGG	2 cut(s)	588, 685
BcnI	CCSGG	2 cut(s)	393, 951
BcoDI	GTCTC	1 cut(s)	149
BfaI	CTAG	4 cut(s)	443, 740, 822, 1004
BglI	GCCNNNNNGGC	1 cut(s)	61
BisI	GCNGC	4 cut(s)	65, 795, 896, 899
BlsI	GCNGC	4 cut(s)	66, 796, 897, 900
Bme1390I	CCNGG	4 cut(s)	393, 588, 685, 951
BmiI	GGNNCC	2 cut(s)	307, 592
BmrFI	CCNGG	4 cut(s)	393, 588, 685, 951
BmsI	GCATC	5 cut(s)	126, 466, 532, 712, 918
BpiI	GAAGAC	1 cut(s)	257
Bpu10I	CCTNAGC	1 cut(s)	469
BpuEI	CTTGAG	1 cut(s)	273
BpuMI	CCSGG	2 cut(s)	393, 951
BsaAI	YACGTR	1 cut(s)	133
BsaJI	CCNNGG	6 cut(s)	56, 245, 300, 309, 909, 949
BsaWI	WCCGGW	1 cut(s)	364
BsaXI	ACNNNNNCTCC	2 cut(s)	660, 690
Bsc4I	CCNNNNNNNGG	3 cut(s)	315, 418, 875
Bse118I	RCCGGY	1 cut(s)	364
Bse3DI	GCAATG	2 cut(s)	441, 777
BseBI	CCWGG	2 cut(s)	588, 685
BseDI	CCNNGG	6 cut(s)	56, 245, 300, 309, 909, 949
BseGI	GGATG	3 cut(s)	167, 547, 703
BseLI	CCNNNNNNNGG	3 cut(s)	315, 418, 875
BseMI	GCAATG	2 cut(s)	441, 777
BseXI	GCAGC	4 cut(s)	76, 781, 882, 885
BsgI	GTGCAG	1 cut(s)	315
Bsh1285I	CGRYCG	1 cut(s)	955
BshFI	GGCC	3 cut(s)	55, 683, 879
BshNI	GGYRCC	1 cut(s)	590
BshTI	ACCGGT	1 cut(s)	364
BsiEI	CGRYCG	1 cut(s)	955
BsiHKAI	GWGCWC	1 cut(s)	532
BsiSI	CCGG	3 cut(s)	365, 392, 951
BslFI	GGGAC	2 cut(s)	901, 932
BslI	CCNNNNNNNGG	3 cut(s)	315, 418, 875
BsmAI	GTCTC	1 cut(s)	149
BsmBI	CGTCTC	1 cut(s)	149
BsmFI	GGGAC	2 cut(s)	901, 932
BsnI	GGCC	3 cut(s)	55, 683, 879
Bsp1286I	GDGCHC	1 cut(s)	532
Bsp1407I	TGTACA	1 cut(s)	178
Bsp143I	GATC	3 cut(s)	305, 456, 963
Bsp19I	CCATGG	2 cut(s)	245, 909
BspACI	CCGC	2 cut(s)	270, 830
BspANI	GGCC	3 cut(s)	55, 683, 879
BspLI	GGNNCC	2 cut(s)	307, 592
BspPI	GGATC	3 cut(s)	300, 313, 451
BspQI	GCTCTTC	1 cut(s)	88
BspT107I	GGYRCC	1 cut(s)	590
BsrDI	GCAATG	2 cut(s)	441, 777
BsrFI	RCCGGY	1 cut(s)	364
BsrGI	TGTACA	1 cut(s)	178
BssAI	RCCGGY	1 cut(s)	364
BssECI	CCNNGG	6 cut(s)	56, 245, 300, 309, 909, 949
BssMI	GATC	3 cut(s)	305, 456, 963
BssT1I	CCWWGG	4 cut(s)	245, 300, 309, 909
Bst2UI	CCWGG	2 cut(s)	588, 685
Bst4CI	ACNGT	3 cut(s)	45, 625, 976
Bst6I	CTCTTC	3 cut(s)	88, 1004, 1029
BstAUI	TGTACA	1 cut(s)	178
BstBAI	YACGTR	1 cut(s)	133
BstDEI	CTNAG	2 cut(s)	228, 469
BstDSI	CCRYGG	2 cut(s)	245, 909
BstEII	GGTNACC	1 cut(s)	101
BstF5I	GGATG	3 cut(s)	167, 547, 703
BstHHI	GCGC	1 cut(s)	202
BstKTI	GATC	3 cut(s)	308, 459, 966
BstMAI	GTCTC	1 cut(s)	149
BstMBI	GATC	3 cut(s)	305, 456, 963
BstMCI	CGRYCG	1 cut(s)	955
BstMWI	GCNNNNNNNGC	6 cut(s)	61, 87, 643, 803, 827, 986
BstNI	CCWGG	2 cut(s)	588, 685
BstPI	GGTNACC	1 cut(s)	101
BstSCI	CCNGG	4 cut(s)	391, 586, 683, 949
BstV1I	GCAGC	4 cut(s)	76, 781, 882, 885
BstV2I	GAAGAC	1 cut(s)	257
BstX2I	RGATCY	1 cut(s)	305
BstYI	RGATCY	1 cut(s)	305
BsuRI	GGCC	3 cut(s)	55, 683, 879
BtgI	CCRYGG	2 cut(s)	245, 909
BtsCI	GGATG	3 cut(s)	167, 547, 703
BtsI	GCAGTG	1 cut(s)	801
BtsIMutI	CAGTG	2 cut(s)	41, 801
CfoI	GCGC	1 cut(s)	202
Cfr10I	RCCGGY	1 cut(s)	364
Csp6I	GTAC	6 cut(s)	166, 179, 208, 359, 591, 715
CspAI	ACCGGT	1 cut(s)	364
CviAII	CATG	7 cut(s)	246, 315, 502, 538, 655, 853, 910
CviQI	GTAC	6 cut(s)	166, 179, 208, 359, 591, 715
DdeI	CTNAG	2 cut(s)	228, 469
DpnI	GATC	3 cut(s)	307, 458, 965
DpnII	GATC	3 cut(s)	305, 456, 963
Eam1104I	CTCTTC	3 cut(s)	88, 1004, 1029
EarI	CTCTTC	3 cut(s)	88, 1004, 1029
EciI	GGCGGA	1 cut(s)	259
Eco130I	CCWWGG	4 cut(s)	245, 300, 309, 909
Eco147I	AGGCCT	1 cut(s)	683
Eco32I	GATATC	1 cut(s)	522
Eco91I	GGTNACC	1 cut(s)	101
EcoO65I	GGTNACC	1 cut(s)	101
EcoRI	GAATTC	2 cut(s)	149, 688
EcoRII	CCWGG	2 cut(s)	586, 683
EcoRV	GATATC	1 cut(s)	522
EcoT14I	CCWWGG	4 cut(s)	245, 300, 309, 909
ErhI	CCWWGG	4 cut(s)	245, 300, 309, 909
Esp3I	CGTCTC	1 cut(s)	149
FaeI	CATG	7 cut(s)	249, 318, 505, 541, 658, 856, 913
FalI	AAGNNNNNCTT	2 cut(s)	293, 325
FaqI	GGGAC	2 cut(s)	901, 932
FatI	CATG	7 cut(s)	245, 314, 501, 537, 654, 852, 909
Fnu4HI	GCNGC	4 cut(s)	65, 795, 896, 899
FokI	GGATG	3 cut(s)	174, 554, 690
Fsp4HI	GCNGC	4 cut(s)	65, 795, 896, 899
FspBI	CTAG	4 cut(s)	443, 740, 822, 1004
GlaI	GCGC	1 cut(s)	201
GluI	GCNGC	4 cut(s)	65, 795, 896, 899
HaeIII	GGCC	3 cut(s)	55, 683, 879
HapII	CCGG	3 cut(s)	365, 392, 951
HhaI	GCGC	1 cut(s)	202
Hin1II	CATG	7 cut(s)	249, 318, 505, 541, 658, 856, 913
Hin6I	GCGC	1 cut(s)	200
HinP1I	GCGC	1 cut(s)	200
HinfI	GANTC	5 cut(s)	241, 415, 583, 658, 915
HpaII	CCGG	3 cut(s)	365, 392, 951
HphI	GGTGA	5 cut(s)	214, 250, 379, 385, 457
Hpy166II	GTNNAC	1 cut(s)	715
Hpy188I	TCNGA	3 cut(s)	49, 791, 957
Hpy188III	TCNNGA	3 cut(s)	146, 419, 935
Hpy8I	GTNNAC	1 cut(s)	715
Hpy99I	CGWCG	1 cut(s)	20
HpyAV	CCTTC	2 cut(s)	221, 396
HpyCH4III	ACNGT	3 cut(s)	45, 625, 976
HpyCH4IV	ACGT	3 cut(s)	132, 254, 750
HpyCH4V	TGCA	5 cut(s)	332, 383, 479, 562, 989
HpyF10VI	GCNNNNNNNGC	6 cut(s)	61, 87, 643, 803, 827, 986
HpyF3I	CTNAG	2 cut(s)	228, 469
HpySE526I	ACGT	3 cut(s)	132, 254, 750
Hsp92II	CATG	7 cut(s)	249, 318, 505, 541, 658, 856, 913
HspAI	GCGC	1 cut(s)	200
KpnI	GGTACC	1 cut(s)	594
Kzo9I	GATC	3 cut(s)	305, 456, 963
LguI	GCTCTTC	1 cut(s)	88
LmnI	GCTCC	1 cut(s)	791
Lsp1109I	GCAGC	4 cut(s)	76, 781, 882, 885
LweI	GCATC	5 cut(s)	126, 466, 532, 712, 918
MaeI	CTAG	4 cut(s)	443, 740, 822, 1004
MaeII	ACGT	3 cut(s)	132, 254, 750
MaeIII	GTNAC	3 cut(s)	101, 554, 832
MalI	GATC	3 cut(s)	307, 458, 965
MboI	GATC	3 cut(s)	305, 456, 963
MboII	GAAGA	7 cut(s)	16, 75, 85, 262, 937, 1021, 1046
MflI	RGATCY	1 cut(s)	305
MhlI	GDGCHC	1 cut(s)	532
MluCI	AATT	7 cut(s)	149, 322, 447, 493, 570, 671, 688
MmeI	TCCRAC	2 cut(s)	733, 935
MnlI	CCTC	6 cut(s)	4, 15, 51, 118, 785, 1005
MroXI	GAANNNNTTC	1 cut(s)	1038
MseI	TTAA	2 cut(s)	321, 678
MslI	CAYNNNNRTG	2 cut(s)	708, 806
MspI	CCGG	3 cut(s)	365, 392, 951
MspR9I	CCNGG	4 cut(s)	393, 588, 685, 951
MvaI	CCWGG	2 cut(s)	588, 685
MwoI	GCNNNNNNNGC	6 cut(s)	61, 87, 643, 803, 827, 986
NciI	CCSGG	2 cut(s)	393, 951
NcoI	CCATGG	2 cut(s)	245, 909
NdeII	GATC	3 cut(s)	305, 456, 963
NlaIII	CATG	7 cut(s)	249, 318, 505, 541, 658, 856, 913
NlaIV	GGNNCC	2 cut(s)	307, 592
NmeAIII	GCCGAG	2 cut(s)	81, 410
NmuCI	GTSAC	1 cut(s)	832
PceI	AGGCCT	1 cut(s)	683
PciSI	GCTCTTC	1 cut(s)	88
PcsI	WCGNNNNNNNCGW	1 cut(s)	15
PdmI	GAANNNNTTC	1 cut(s)	1038
PfeI	GAWTC	5 cut(s)	241, 415, 583, 658, 915
PfoI	TCCNGGA	1 cut(s)	391
PinAI	ACCGGT	1 cut(s)	364
PkrI	GCNGC	4 cut(s)	66, 796, 897, 900
Ppu21I	YACGTR	1 cut(s)	133
Psp6I	CCWGG	2 cut(s)	586, 683
PspEI	GGTNACC	1 cut(s)	101
PspGI	CCWGG	2 cut(s)	586, 683
PspN4I	GGNNCC	2 cut(s)	307, 592
PsuI	RGATCY	1 cut(s)	305
RsaI	GTAC	6 cut(s)	167, 180, 209, 360, 592, 716
RsaNI	GTAC	6 cut(s)	166, 179, 208, 359, 591, 715
RseI	CAYNNNNRTG	2 cut(s)	708, 806
SapI	GCTCTTC	1 cut(s)	88
SaqAI	TTAA	2 cut(s)	321, 678
SatI	GCNGC	4 cut(s)	65, 795, 896, 899
Sau3AI	GATC	3 cut(s)	305, 456, 963
ScrFI	CCNGG	4 cut(s)	393, 588, 685, 951
SduI	GDGCHC	1 cut(s)	532
SfaNI	GCATC	5 cut(s)	126, 466, 532, 712, 918
SmiMI	CAYNNNNRTG	2 cut(s)	708, 806
SmlI	CTYRAG	1 cut(s)	288
SmoI	CTYRAG	1 cut(s)	288
Sse9I	AATT	7 cut(s)	149, 322, 447, 493, 570, 671, 688
SseBI	AGGCCT	1 cut(s)	683
SsiI	CCGC	2 cut(s)	270, 830
SspMI	CTAG	4 cut(s)	443, 740, 822, 1004
StuI	AGGCCT	1 cut(s)	683
StyD4I	CCNGG	4 cut(s)	391, 586, 683, 949
StyI	CCWWGG	4 cut(s)	245, 300, 309, 909
TaaI	ACNGT	3 cut(s)	45, 625, 976
TaiI	ACGT	3 cut(s)	135, 257, 753
TaqI	TCGA	1 cut(s)	147
TasI	AATT	7 cut(s)	149, 322, 447, 493, 570, 671, 688
TatI	WGTACW	1 cut(s)	178
TfiI	GAWTC	5 cut(s)	241, 415, 583, 658, 915
Tru1I	TTAA	2 cut(s)	321, 678
Tru9I	TTAA	2 cut(s)	321, 678
TscAI	CASTG	2 cut(s)	48, 808
TseFI	GTSAC	1 cut(s)	832
TseI	GCWGC	4 cut(s)	64, 794, 895, 898
Tsp45I	GTSAC	1 cut(s)	832
TspDTI	ATGAA	4 cut(s)	17, 61, 938, 1041
TspRI	CASTG	2 cut(s)	48, 808
XapI	RAATTY	2 cut(s)	149, 688
XcmI	CCANNNNNNNNNTGG	2 cut(s)	307, 499
XmnI	GAANNNNTTC	1 cut(s)	1038
XspI	CTAG	4 cut(s)	443, 740, 822, 1004

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.