Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000871

Physical Location & Seq

Genomic Coordinates Forward (+)

13015224 .. 13015817

Gene Structure 594 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0080000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGGGTACCGTGGGGGTACTCTAGCTTGTCTCATACTGCCAGGTAGTGAAGTTCCAAAATGGTTCAGCTGTCGCAAAGATCCAAATCTTATATGTGAATTGCTTGTTGGCTACTCTCTAGGCTGGAGATCAGTATGTGAACTTTCCATTGGAATCCCTCCAAAAATGAAACAGAAGAACATAGGTTTGGCTCTCTGTGTCGTTTTTGAATGTACAGAAAGTAATTCTGCTGATTGTTGTTTTCGAGCTCAAGTGTTAATCAATGAAGGATACAGCTGTCGTCATGACTTCCATTTCTATTCAAGGCAGACGGAGTCATCTCATGTGTGGCTCAAGTATATTCCATTAGAAATGAGGCCAATGATGAATGGACTGAGTTGGTTGCTCCCTGATATATGTAAAGTTGAATTTTACTGCAGCGGCAACTCCGGCCTTGTATCCTTTATAAGTTGTGGGGCCCACCTAATATGCCAACAGGTTGATGATGTTATGTCTGTTGATGGCACTTATGCACAAGAGCAGTGGCTATCCTTCACTTTGGAACCAATGATTGGTCGAAAGCGCAAGCACCCATCCACTTCAGACAATAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0006810 GO:0006811 GO:0006820 GO:0006862 GO:0008150 GO:0008509 GO:0008514 GO:0012505 GO:0015075 GO:0015215 GO:0015216 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015868 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0022857 GO:0030173 GO:0030176 GO:0031090 GO:0031224 GO:0031227 GO:0031228 GO:0031300 GO:0031301 GO:0031984 GO:0034220 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046963 GO:0046964 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0071702 GO:0071705 GO:0072348 GO:0072530 GO:0098588 GO:0098656 GO:0098791 GO:0098827 GO:1901264 GO:1901505 GO:1901679 GO:1901682 GO:1902559

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UAA

Protein Analysis

197

Amino Acids

22.2

Weight (kDa)

6.5

Isoelectric Point (pI)

46.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000871)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12600 AT4G23010 AT4G23010 AT4G23010
fragaria_vesca	FvH4_5g01421 FvH4_5g01421 FvH4_7g12950 FvH4_7g12950 FvH4_7g12950
malus_domestica	MD02G1194900.v1.1 MD04G1068500.v1.1 MD07G1125700.v1.1
prunus_persica	Prupe.2G153800_v2.0.a1 Prupe.5G089700_v2.0.a1 Prupe.5G089700_v2.0.a1
pyrus_communis	pycom02g15880 pycom04g06180 pycom07g11930
rosa_chinensis	RchiOBHm_Chr0c16g0499921 RchiOBHm_Chr1g0347281 RchiOBHm_Chr1g0352081 RchiOBHm_Chr3g0455881 RchiOBHm_Chr4g0437881 RchiOBHm_Chr7g0199431
rosa_laevigata	RLG00000002748 RLG00000003793 RLG00000006404 RLG00000028361
rosa_multiflora	Rmu_sc0002453.1_g000013 Rmu_sc0002464.1_g000008 Rmu_sc0003781.1_g000011 Rmu_sc0008907.1_g000006 Rmu_sc0010560.1_g000004
rosa_roxburghii	Rroxscaffold_3G00256730 Rroxscaffold_4G00303280 Rroxscaffold_5G00361360
rosa_rugosa	Rorug01G0080000 Rorug01G0223900 Rorug01G0224000 Rorug01G0224100 Rorug02G0308800 Rorug02G0308900 Rorug02G0309000 Rorug02G0515400 Rorug04G0305100 Rorug06G0238700 Rorug06G0238800 Rorug06G0238900 Rorug06G0239000 Rorug07G0053800 Rorug07G0053900.1 Rorug07G0054000
rosa_samantha	Rh1CG222900 Rh4BG367900 Rh4CG154300 Rh4CG381900 Rh4DG362500 Rh6BG359000 Rh6DG293200 Rh7AG179000 Rh7CG187600 Rh7DG181900
rosa_wichuraiana	Rw0G011570 Rw1G020720 Rw5G045820 Rw7G015720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	446
Acc65I	GGTACC	1 cut(s)	6
AccB1I	GGYRCC	1 cut(s)	6
AccB7I	CCANNNNNTGG	1 cut(s)	551
AciI	CCGC	1 cut(s)	420
AclWI	GGATC	1 cut(s)	74
AcsI	RAATTY	1 cut(s)	407
AcuI	CTGAAG	1 cut(s)	564
AfaI	GTAC	3 cut(s)	8, 19, 214
AfiI	CCNNNNNNNGG	1 cut(s)	551
AgsI	TTSAA	3 cut(s)	209, 303, 407
AjnI	CCWGG	1 cut(s)	40
AjuI	GAANNNNNNNTTGG	8 cut(s)	90, 122, 132, 164, 170, 202, 534, 566
AluBI	AGCT	4 cut(s)	26, 69, 248, 276
AluI	AGCT	4 cut(s)	26, 69, 248, 276
Alw21I	GWGCWC	1 cut(s)	250
Alw26I	GTCTC	1 cut(s)	35
AlwI	GGATC	1 cut(s)	74
AoxI	GGCC	3 cut(s)	356, 430, 456
ApaI	GGGCCC	1 cut(s)	460
ApeKI	GCWGC	1 cut(s)	417
ApoI	RAATTY	1 cut(s)	407
Asp718I	GGTACC	1 cut(s)	6
AspLEI	GCGC	1 cut(s)	564
AspS9I	GGNCC	2 cut(s)	456, 457
BaeGI	GKGCMC	1 cut(s)	460
BaeI	ACNNNNGTAYC	2 cut(s)	262, 295
BanI	GGYRCC	1 cut(s)	6
BanII	GRGCYC	2 cut(s)	250, 460
Bbv12I	GWGCWC	1 cut(s)	250
BbvI	GCAGC	1 cut(s)	429
BccI	CCATC	2 cut(s)	494, 580
BciT130I	CCWGG	1 cut(s)	42
BciVI	GTATCC	2 cut(s)	263, 448
BcoDI	GTCTC	1 cut(s)	35
BfaI	CTAG	2 cut(s)	23, 119
BfmI	CTRYAG	1 cut(s)	415
BfuI	GTATCC	2 cut(s)	263, 448
BisI	GCNGC	2 cut(s)	418, 421
BlsI	GCNGC	2 cut(s)	419, 422
Bme1390I	CCNGG	1 cut(s)	42
BmgT120I	GGNCC	2 cut(s)	456, 457
BmiI	GGNNCC	4 cut(s)	8, 457, 458, 543
BmrFI	CCNGG	1 cut(s)	42
BpmI	CTGGAG	1 cut(s)	145
BpuEI	CTTGAG	2 cut(s)	234, 317
BsaBI	GATNNNNATC	1 cut(s)	84
BsaJI	CCNNGG	1 cut(s)	10
Bsc4I	CCNNNNNNNGG	1 cut(s)	551
Bse8I	GATNNNNATC	1 cut(s)	84
BseBI	CCWGG	1 cut(s)	42
BseDI	CCNNGG	1 cut(s)	10
BseGI	GGATG	1 cut(s)	572
BseJI	GATNNNNATC	1 cut(s)	84
BseLI	CCNNNNNNNGG	1 cut(s)	551
BseMII	CTCAG	1 cut(s)	365
BseSI	GKGCMC	1 cut(s)	460
BseXI	GCAGC	1 cut(s)	429
BshFI	GGCC	3 cut(s)	358, 432, 458
BshNI	GGYRCC	1 cut(s)	6
BsiHKAI	GWGCWC	1 cut(s)	250
BsiSI	CCGG	1 cut(s)	429
BslI	CCNNNNNNNGG	1 cut(s)	551
BsmAI	GTCTC	1 cut(s)	35
BsnI	GGCC	3 cut(s)	358, 432, 458
Bsp120I	GGGCCC	1 cut(s)	456
Bsp1286I	GDGCHC	2 cut(s)	250, 460
Bsp1407I	TGTACA	1 cut(s)	212
Bsp143I	GATC	2 cut(s)	79, 128
BspACI	CCGC	1 cut(s)	420
BspANI	GGCC	3 cut(s)	358, 432, 458
BspCNI	CTCAG	1 cut(s)	366
BspHI	TCATGA	1 cut(s)	283
BspLI	GGNNCC	4 cut(s)	8, 457, 458, 543
BspMAI	CTGCAG	1 cut(s)	419
BspPI	GGATC	1 cut(s)	74
BspT107I	GGYRCC	1 cut(s)	6
BsrGI	TGTACA	1 cut(s)	212
BssECI	CCNNGG	1 cut(s)	10
BssMI	GATC	2 cut(s)	79, 128
Bst2UI	CCWGG	1 cut(s)	42
Bst4CI	ACNGT	1 cut(s)	11
BstAUI	TGTACA	1 cut(s)	212
BstC8I	GCNNGC	1 cut(s)	566
BstDEI	CTNAG	1 cut(s)	374
BstDSI	CCRYGG	1 cut(s)	10
BstF5I	GGATG	1 cut(s)	572
BstHHI	GCGC	1 cut(s)	564
BstKTI	GATC	2 cut(s)	82, 131
BstMAI	GTCTC	1 cut(s)	35
BstMBI	GATC	2 cut(s)	79, 128
BstMWI	GCNNNNNNNGC	1 cut(s)	429
BstNI	CCWGG	1 cut(s)	42
BstSCI	CCNGG	1 cut(s)	40
BstSFI	CTRYAG	1 cut(s)	415
BstSLI	GKGCMC	1 cut(s)	460
BstV1I	GCAGC	1 cut(s)	429
BstX2I	RGATCY	1 cut(s)	79
BstYI	RGATCY	1 cut(s)	79
BsuI	GTATCC	2 cut(s)	263, 448
BsuRI	GGCC	3 cut(s)	358, 432, 458
BtgI	CCRYGG	1 cut(s)	10
BtsCI	GGATG	1 cut(s)	572
BtsI	GCAGTG	1 cut(s)	527
BtsIMutI	CAGTG	1 cut(s)	527
Cac8I	GCNNGC	1 cut(s)	566
CciI	TCATGA	1 cut(s)	283
CfoI	GCGC	1 cut(s)	564
Cfr13I	GGNCC	2 cut(s)	456, 457
Csp6I	GTAC	3 cut(s)	7, 18, 213
CspCI	CAANNNNNGTGG	2 cut(s)	503, 538
CviAII	CATG	2 cut(s)	284, 323
CviQI	GTAC	3 cut(s)	7, 18, 213
DdeI	CTNAG	1 cut(s)	374
DpnI	GATC	2 cut(s)	81, 130
DpnII	GATC	2 cut(s)	79, 128
Ecl136II	GAGCTC	1 cut(s)	248
Eco24I	GRGCYC	2 cut(s)	250, 460
Eco53kI	GAGCTC	1 cut(s)	248
Eco57I	CTGAAG	1 cut(s)	564
EcoICRI	GAGCTC	1 cut(s)	248
EcoO109I	RGGNCCY	1 cut(s)	456
EcoRII	CCWGG	1 cut(s)	40
EcoT38I	GRGCYC	2 cut(s)	250, 460
FaeI	CATG	2 cut(s)	287, 326
FatI	CATG	2 cut(s)	283, 322
Fnu4HI	GCNGC	2 cut(s)	418, 421
FokI	GGATG	1 cut(s)	559
FriOI	GRGCYC	2 cut(s)	250, 460
Fsp4HI	GCNGC	2 cut(s)	418, 421
FspBI	CTAG	2 cut(s)	23, 119
GlaI	GCGC	1 cut(s)	563
GluI	GCNGC	2 cut(s)	418, 421
GsuI	CTGGAG	1 cut(s)	145
HaeIII	GGCC	3 cut(s)	358, 432, 458
HapII	CCGG	1 cut(s)	429
HhaI	GCGC	1 cut(s)	564
Hin1II	CATG	2 cut(s)	287, 326
Hin6I	GCGC	1 cut(s)	562
HinP1I	GCGC	1 cut(s)	562
HinfI	GANTC	2 cut(s)	153, 314
HpaII	CCGG	1 cut(s)	429
Hpy166II	GTNNAC	1 cut(s)	140
Hpy188I	TCNGA	1 cut(s)	583
Hpy188III	TCNNGA	1 cut(s)	284
Hpy8I	GTNNAC	1 cut(s)	140
HpyAV	CCTTC	2 cut(s)	260, 541
HpyCH4III	ACNGT	1 cut(s)	11
HpyCH4V	TGCA	2 cut(s)	417, 512
HpyF10VI	GCNNNNNNNGC	1 cut(s)	429
HpyF3I	CTNAG	1 cut(s)	374
Hsp92II	CATG	2 cut(s)	287, 326
HspAI	GCGC	1 cut(s)	562
KpnI	GGTACC	1 cut(s)	10
Kzo9I	GATC	2 cut(s)	79, 128
LmnI	GCTCC	1 cut(s)	390
LpnPI	CCDG	6 cut(s)	27, 54, 109, 402, 442, 461
Lsp1109I	GCAGC	1 cut(s)	429
MaeI	CTAG	2 cut(s)	23, 119
MalI	GATC	2 cut(s)	81, 130
MboI	GATC	2 cut(s)	79, 128
MboII	GAAGA	1 cut(s)	187
MflI	RGATCY	1 cut(s)	79
MhlI	GDGCHC	2 cut(s)	250, 460
MluCI	AATT	3 cut(s)	98, 223, 407
MlyI	GAGTC	1 cut(s)	323
MnlI	CCTC	2 cut(s)	168, 348
MseI	TTAA	2 cut(s)	257, 592
MspA1I	CMGCKG	3 cut(s)	69, 276, 420
MspI	CCGG	1 cut(s)	429
MspR9I	CCNGG	1 cut(s)	42
MvaI	CCWGG	1 cut(s)	42
MwoI	GCNNNNNNNGC	1 cut(s)	429
NdeII	GATC	2 cut(s)	79, 128
NlaIII	CATG	2 cut(s)	287, 326
NlaIV	GGNNCC	4 cut(s)	8, 457, 458, 543
PagI	TCATGA	1 cut(s)	283
PfeI	GAWTC	1 cut(s)	153
PflFI	GACNNNGTC	1 cut(s)	313
PflMI	CCANNNNNTGG	1 cut(s)	551
PkrI	GCNGC	2 cut(s)	419, 422
PleI	GAGTC	1 cut(s)	322
PpsI	GAGTC	1 cut(s)	322
PsiI	TTATAA	1 cut(s)	446
Psp124BI	GAGCTC	1 cut(s)	250
Psp6I	CCWGG	1 cut(s)	40
PspGI	CCWGG	1 cut(s)	40
PspN4I	GGNNCC	4 cut(s)	8, 457, 458, 543
PspOMI	GGGCCC	1 cut(s)	456
PspPI	GGNCC	2 cut(s)	456, 457
PstI	CTGCAG	1 cut(s)	419
PsuI	RGATCY	1 cut(s)	79
PsyI	GACNNNGTC	1 cut(s)	313
PvuII	CAGCTG	2 cut(s)	69, 276
RsaI	GTAC	3 cut(s)	8, 19, 214
RsaNI	GTAC	3 cut(s)	7, 18, 213
SacI	GAGCTC	1 cut(s)	250
SaqAI	TTAA	2 cut(s)	257, 592
SatI	GCNGC	2 cut(s)	418, 421
Sau3AI	GATC	2 cut(s)	79, 128
Sau96I	GGNCC	2 cut(s)	456, 457
SchI	GAGTC	1 cut(s)	323
ScrFI	CCNGG	1 cut(s)	42
SduI	GDGCHC	2 cut(s)	250, 460
SetI	ASST	8 cut(s)	28, 46, 71, 187, 250, 278, 465, 480
SfcI	CTRYAG	1 cut(s)	415
SmlI	CTYRAG	2 cut(s)	249, 332
SmoI	CTYRAG	2 cut(s)	249, 332
Sse9I	AATT	3 cut(s)	98, 223, 407
SsiI	CCGC	1 cut(s)	420
SspMI	CTAG	2 cut(s)	23, 119
SstI	GAGCTC	1 cut(s)	250
StyD4I	CCNGG	1 cut(s)	40
TaaI	ACNGT	1 cut(s)	11
TaqI	TCGA	2 cut(s)	244, 556
TasI	AATT	3 cut(s)	98, 223, 407
TatI	WGTACW	1 cut(s)	212
TauI	GCSGC	1 cut(s)	423
TfiI	GAWTC	1 cut(s)	153
Tru1I	TTAA	2 cut(s)	257, 592
Tru9I	TTAA	2 cut(s)	257, 592
TscAI	CASTG	1 cut(s)	527
TseI	GCWGC	1 cut(s)	417
TspDTI	ATGAA	3 cut(s)	182, 279, 380
TspGWI	ACGGA	1 cut(s)	326
TspRI	CASTG	1 cut(s)	527
Tth111I	GACNNNGTC	1 cut(s)	313
Van91I	CCANNNNNTGG	1 cut(s)	551
XapI	RAATTY	1 cut(s)	407
XspI	CTAG	2 cut(s)	23, 119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.