Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0000871

Physical Location & Seq

Genomic Coordinates Reverse (-)

38085497 .. 38086098

Gene Structure 602 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0238800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGCAGATCAGTACCGGAAAGAGATCAAAGAGAACCGTGCAGCAGCGAAGGTGGAAGAAGAGCCTGCTACTGGCTGTGGGATGTTTGATTTCTTGAAGAAGAAGGAAAATGAGATGCCCCAACCTGAAGAACAGAAGCATACCCTGGCTGAAAAGCTCCACCACCATGATGGCAGCAACTCTAGCTCATCTAGCAGTGATGAAGAAGGCGGGGAGAAGAAAAAGAAGGGACTGAAGGGTAAGATCAAGGAGAAGATCACCGGCAAAAAGGATGAGGAAGATGCTTACCATGCACCCATTCCCGCTGCAAAGAGTGGAGTAACAAATGGTGAGGAGAAGAAGGGATTCATAGAGAAAATTAAAGAAAAGCTTCCTGGACAGCACAAGGAAGCTGAAGTTGGTGCCCCTCCCGAGTATCATGCTCCACACGAAGGTGAGCCAAAGGAGACGAAAGGAATCATGGAGAAGATTAAGGAGAAGCTCCCTGGTGGTAACAAGAATGAAGAGGAGAAGCCCAAGGAGTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0006810 GO:0006811 GO:0006820 GO:0006862 GO:0008150 GO:0008509 GO:0008514 GO:0012505 GO:0015075 GO:0015215 GO:0015216 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015868 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0022857 GO:0030173 GO:0030176 GO:0031090 GO:0031224 GO:0031227 GO:0031228 GO:0031300 GO:0031301 GO:0031984 GO:0034220 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046963 GO:0046964 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0071702 GO:0071705 GO:0072348 GO:0072530 GO:0098588 GO:0098656 GO:0098791 GO:0098827 GO:1901264 GO:1901505 GO:1901679 GO:1901682 GO:1902559

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UAA

Protein Analysis

175

Amino Acids

19.54

Weight (kDa)

6.28

Isoelectric Point (pI)

41.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dehydrin	PF00257	33 - 128	3e-22	Dehydrin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000871)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12600 AT4G23010 AT4G23010 AT4G23010
fragaria_vesca	FvH4_5g01421 FvH4_5g01421 FvH4_7g12950 FvH4_7g12950 FvH4_7g12950
malus_domestica	MD02G1194900.v1.1 MD04G1068500.v1.1 MD07G1125700.v1.1
prunus_persica	Prupe.2G153800_v2.0.a1 Prupe.5G089700_v2.0.a1 Prupe.5G089700_v2.0.a1
pyrus_communis	pycom02g15880 pycom04g06180 pycom07g11930
rosa_chinensis	RchiOBHm_Chr0c16g0499921 RchiOBHm_Chr1g0347281 RchiOBHm_Chr1g0352081 RchiOBHm_Chr3g0455881 RchiOBHm_Chr4g0437881 RchiOBHm_Chr7g0199431
rosa_laevigata	RLG00000002748 RLG00000003793 RLG00000006404 RLG00000028361
rosa_multiflora	Rmu_sc0002453.1_g000013 Rmu_sc0002464.1_g000008 Rmu_sc0003781.1_g000011 Rmu_sc0008907.1_g000006 Rmu_sc0010560.1_g000004
rosa_roxburghii	Rroxscaffold_3G00256730 Rroxscaffold_4G00303280 Rroxscaffold_5G00361360
rosa_rugosa	Rorug01G0080000 Rorug01G0223900 Rorug01G0224000 Rorug01G0224100 Rorug02G0308800 Rorug02G0308900 Rorug02G0309000 Rorug02G0515400 Rorug04G0305100 Rorug06G0238700 Rorug06G0238800 Rorug06G0238900 Rorug06G0239000 Rorug07G0053800 Rorug07G0053900.1 Rorug07G0054000
rosa_samantha	Rh1CG222900 Rh4BG367900 Rh4CG154300 Rh4CG381900 Rh4DG362500 Rh6BG359000 Rh6DG293200 Rh7AG179000 Rh7CG187600 Rh7DG181900
rosa_wichuraiana	Rw0G011570 Rw1G020720 Rw5G045820 Rw7G015720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	401
AciI	CCGC	2 cut(s)	210, 303
AcuI	CTGAAG	3 cut(s)	147, 254, 414
AfaI	GTAC	2 cut(s)	14, 524
AfiI	CCNNNNNNNGG	2 cut(s)	71, 431
AgsI	TTSAA	1 cut(s)	97
AjnI	CCWGG	3 cut(s)	144, 373, 484
AjuI	GAANNNNNNNTTGG	2 cut(s)	381, 413
AleI	CACNNNNGTG	1 cut(s)	432
AluBI	AGCT	5 cut(s)	157, 186, 370, 392, 481
AluI	AGCT	5 cut(s)	157, 186, 370, 392, 481
Alw26I	GTCTC	1 cut(s)	440
Ama87I	CYCGRG	1 cut(s)	410
ApeKI	GCWGC	4 cut(s)	41, 44, 174, 305
Asp700I	GAANNNNTTC	2 cut(s)	344, 369
AsuHPI	GGTGA	3 cut(s)	250, 341, 446
AvaI	CYCGRG	1 cut(s)	410
BaeGI	GKGCMC	1 cut(s)	406
BanI	GGYRCC	1 cut(s)	401
BbvI	GCAGC	4 cut(s)	53, 56, 186, 292
BccI	CCATC	1 cut(s)	164
BcgI	CGANNNNNNTGC	2 cut(s)	401, 435
BciT130I	CCWGG	3 cut(s)	146, 375, 486
BcoDI	GTCTC	1 cut(s)	440
BfaI	CTAG	2 cut(s)	183, 192
BisI	GCNGC	4 cut(s)	42, 45, 175, 306
BlsI	GCNGC	4 cut(s)	43, 46, 176, 307
BmcAI	AGTACT	1 cut(s)	524
Bme1390I	CCNGG	3 cut(s)	146, 375, 486
BmeT110I	CYCGRG	1 cut(s)	410
BmiI	GGNNCC	1 cut(s)	403
BmrFI	CCNGG	3 cut(s)	146, 375, 486
BmsI	GCATC	2 cut(s)	105, 271
BsaJI	CCNNGG	3 cut(s)	144, 484, 516
BsaWI	WCCGGW	1 cut(s)	15
Bsc4I	CCNNNNNNNGG	2 cut(s)	71, 431
Bse118I	RCCGGY	1 cut(s)	260
Bse1I	ACTGG	1 cut(s)	76
BseBI	CCWGG	3 cut(s)	146, 375, 486
BseDI	CCNNGG	3 cut(s)	144, 484, 516
BseGI	GGATG	2 cut(s)	87, 277
BseLI	CCNNNNNNNGG	2 cut(s)	71, 431
BseNI	ACTGG	1 cut(s)	76
BseRI	GAGGAG	2 cut(s)	347, 521
BseSI	GKGCMC	1 cut(s)	406
BseXI	GCAGC	4 cut(s)	53, 56, 186, 292
BsgI	GTGCAG	1 cut(s)	60
BshNI	GGYRCC	1 cut(s)	401
BsiHKCI	CYCGRG	1 cut(s)	410
BsiSI	CCGG	2 cut(s)	16, 261
BslFI	GGGAC	1 cut(s)	243
BslI	CCNNNNNNNGG	2 cut(s)	71, 431
BsmAI	GTCTC	1 cut(s)	440
BsmBI	CGTCTC	1 cut(s)	440
BsmFI	GGGAC	1 cut(s)	243
BsoBI	CYCGRG	1 cut(s)	410
Bsp1286I	GDGCHC	1 cut(s)	406
Bsp143I	GATC	4 cut(s)	7, 24, 243, 255
BspACI	CCGC	2 cut(s)	210, 303
BspLI	GGNNCC	1 cut(s)	403
BspQI	GCTCTTC	1 cut(s)	54
BspT107I	GGYRCC	1 cut(s)	401
BsrFI	RCCGGY	1 cut(s)	260
BsrI	ACTGG	1 cut(s)	76
BssAI	RCCGGY	1 cut(s)	260
BssECI	CCNNGG	3 cut(s)	144, 484, 516
BssMI	GATC	4 cut(s)	7, 24, 243, 255
BssT1I	CCWWGG	1 cut(s)	516
Bst2UI	CCWGG	3 cut(s)	146, 375, 486
Bst4CI	ACNGT	1 cut(s)	38
Bst6I	CTCTTC	2 cut(s)	54, 498
BstC8I	GCNNGC	1 cut(s)	66
BstF5I	GGATG	2 cut(s)	87, 277
BstKTI	GATC	4 cut(s)	10, 27, 246, 258
BstMAI	GTCTC	1 cut(s)	440
BstMBI	GATC	4 cut(s)	7, 24, 243, 255
BstMWI	GCNNNNNNNGC	3 cut(s)	183, 192, 290
BstNI	CCWGG	3 cut(s)	146, 375, 486
BstSCI	CCNGG	3 cut(s)	144, 373, 484
BstSLI	GKGCMC	1 cut(s)	406
BstV1I	GCAGC	4 cut(s)	53, 56, 186, 292
BstXI	CCANNNNNNTGG	1 cut(s)	170
BtsCI	GGATG	2 cut(s)	87, 277
BtsI	GCAGTG	1 cut(s)	202
BtsIMutI	CAGTG	1 cut(s)	202
Cac8I	GCNNGC	1 cut(s)	66
Cfr10I	RCCGGY	1 cut(s)	260
Csp6I	GTAC	2 cut(s)	13, 523
CviAII	CATG	4 cut(s)	167, 290, 419, 460
CviQI	GTAC	2 cut(s)	13, 523
DpnI	GATC	4 cut(s)	9, 26, 245, 257
DpnII	GATC	4 cut(s)	7, 24, 243, 255
Eam1104I	CTCTTC	2 cut(s)	54, 498
EarI	CTCTTC	2 cut(s)	54, 498
Eco130I	CCWWGG	1 cut(s)	516
Eco57I	CTGAAG	3 cut(s)	147, 254, 414
Eco88I	CYCGRG	1 cut(s)	410
EcoRII	CCWGG	3 cut(s)	144, 373, 484
EcoT14I	CCWWGG	1 cut(s)	516
ErhI	CCWWGG	1 cut(s)	516
Esp3I	CGTCTC	1 cut(s)	440
FaeI	CATG	4 cut(s)	170, 293, 422, 463
FaiI	YATR	6 cut(s)	141, 168, 291, 350, 420, 461
FalI	AAGNNNNNCTT	2 cut(s)	354, 386
FaqI	GGGAC	1 cut(s)	243
FatI	CATG	4 cut(s)	166, 289, 418, 459
FauI	CCCGC	2 cut(s)	203, 310
Fnu4HI	GCNGC	4 cut(s)	42, 45, 175, 306
FokI	GGATG	2 cut(s)	94, 284
Fsp4HI	GCNGC	4 cut(s)	42, 45, 175, 306
FspBI	CTAG	2 cut(s)	183, 192
GluI	GCNGC	4 cut(s)	42, 45, 175, 306
HapII	CCGG	2 cut(s)	16, 261
Hin1II	CATG	4 cut(s)	170, 293, 422, 463
HindIII	AAGCTT	1 cut(s)	368
HinfI	GANTC	2 cut(s)	345, 456
HpaII	CCGG	2 cut(s)	16, 261
HphI	GGTGA	3 cut(s)	250, 341, 446
Hpy188III	TCNNGA	2 cut(s)	94, 410
HpyAV	CCTTC	7 cut(s)	43, 97, 200, 220, 229, 334, 425
HpyCH4III	ACNGT	1 cut(s)	38
HpyCH4V	TGCA	3 cut(s)	41, 293, 308
HpyF10VI	GCNNNNNNNGC	3 cut(s)	183, 192, 290
Hsp92II	CATG	4 cut(s)	170, 293, 422, 463
Kzo9I	GATC	4 cut(s)	7, 24, 243, 255
LguI	GCTCTTC	1 cut(s)	54
LmnI	GCTCC	3 cut(s)	162, 427, 486
Lsp1109I	GCAGC	4 cut(s)	53, 56, 186, 292
LweI	GCATC	2 cut(s)	105, 271
MaeI	CTAG	2 cut(s)	183, 192
MaeIII	GTNAC	2 cut(s)	319, 491
MalI	GATC	4 cut(s)	9, 26, 245, 257
MboI	GATC	4 cut(s)	7, 24, 243, 255
MhlI	GDGCHC	1 cut(s)	406
MluCI	AATT	1 cut(s)	357
MnlI	CCTC	4 cut(s)	268, 325, 417, 499
MroXI	GAANNNNTTC	2 cut(s)	344, 369
MseI	TTAA	2 cut(s)	360, 471
MslI	CAYNNNNRTG	3 cut(s)	165, 168, 432
MspA1I	CMGCKG	1 cut(s)	305
MspI	CCGG	2 cut(s)	16, 261
MspR9I	CCNGG	3 cut(s)	146, 375, 486
MvaI	CCWGG	3 cut(s)	146, 375, 486
MwoI	GCNNNNNNNGC	3 cut(s)	183, 192, 290
NdeII	GATC	4 cut(s)	7, 24, 243, 255
NlaIII	CATG	4 cut(s)	170, 293, 422, 463
NlaIV	GGNNCC	1 cut(s)	403
OliI	CACNNNNGTG	1 cut(s)	432
PciSI	GCTCTTC	1 cut(s)	54
PdmI	GAANNNNTTC	2 cut(s)	344, 369
PfeI	GAWTC	2 cut(s)	345, 456
PfoI	TCCNGGA	1 cut(s)	373
PkrI	GCNGC	4 cut(s)	43, 46, 176, 307
Psp6I	CCWGG	3 cut(s)	144, 373, 484
PspGI	CCWGG	3 cut(s)	144, 373, 484
PspN4I	GGNNCC	1 cut(s)	403
RsaI	GTAC	2 cut(s)	14, 524
RsaNI	GTAC	2 cut(s)	13, 523
RseI	CAYNNNNRTG	3 cut(s)	165, 168, 432
SapI	GCTCTTC	1 cut(s)	54
SaqAI	TTAA	2 cut(s)	360, 471
SatI	GCNGC	4 cut(s)	42, 45, 175, 306
Sau3AI	GATC	4 cut(s)	7, 24, 243, 255
ScaI	AGTACT	1 cut(s)	524
ScrFI	CCNGG	3 cut(s)	146, 375, 486
SduI	GDGCHC	1 cut(s)	406
SetI	ASST	8 cut(s)	54, 127, 159, 188, 372, 394, 436, 483
SfaNI	GCATC	2 cut(s)	105, 271
SmiMI	CAYNNNNRTG	3 cut(s)	165, 168, 432
Sse9I	AATT	1 cut(s)	357
SsiI	CCGC	2 cut(s)	210, 303
SspMI	CTAG	2 cut(s)	183, 192
StyD4I	CCNGG	3 cut(s)	144, 373, 484
StyI	CCWWGG	1 cut(s)	516
TaaI	ACNGT	1 cut(s)	38
TasI	AATT	1 cut(s)	357
TatI	WGTACW	1 cut(s)	522
TfiI	GAWTC	2 cut(s)	345, 456
Tru1I	TTAA	2 cut(s)	360, 471
Tru9I	TTAA	2 cut(s)	360, 471
TscAI	CASTG	1 cut(s)	202
TseI	GCWGC	4 cut(s)	41, 44, 174, 305
TspDTI	ATGAA	3 cut(s)	216, 337, 516
TspRI	CASTG	1 cut(s)	202
XcmI	CCANNNNNNNNNTGG	1 cut(s)	167
XmnI	GAANNNNTTC	2 cut(s)	344, 369
XspI	CTAG	2 cut(s)	183, 192
ZrmI	AGTACT	1 cut(s)	524

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.