Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0000958

Physical Location & Seq

Genomic Coordinates Forward (+)

14400320 .. 14401190

Gene Structure 871 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG181600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGTATATAAGCCCTTTCCTCAAACCAGTGTACTCAACAAAGAAAACCAAACTCACACTATCCCTACTCTCAGCTAAGAAAACCAGACCAGCTCTACCTCAGATGAATAGCTCCAATTACCAGCTCTCAGACTCCAACCAGAAAAGCCTCGAATCAGTCTCCTCCATCGACAAGCCCGAGTCGTCTTCCTTATCTGACACGAGCGTCACGACTCGCCGTTCACCTCATTCCGACGGAGCGGTGATACTTGCTTCGAGCAGGCCGAAGAAGCGAGCCGGTAGGCGAGTGTTCAAGGAGACTCGCCACCCGGTCTACCGCGGCGTGAGGCTCAGGAACAATAACAAGTGGGTGTGCGAGGTCAGGGAGCCGAACAAAAAGACCAGAATTTGGCTGGGGACGTACCCAACTGTTGAGATGGCCGCTCGGGCGCACGATGTGGCGGCATTGGCCCTTAGGGGGAAGCAGGCATGCCTCAATTTCGCTGATTCGGCTTGGCGGTTGCCCGTTCCGGCTTCCAAAGACCAGCTCGACATTCGCAGGTCCGCCGCCGAGGCTGCTGAGACATTTCGGCCTGAGGAATTCGGCGGCGTCTCAAGCAGCTGCGACGACAACGAGATGGAACATGAGAATGAGAAAATTGAGATGGACAACGAGAAGAAGAATGATGGCTTCTACGAGGACGAAGAGGCGCTCTTCGACATGCCCAGATTGCTGACTAGCATGGCGGAGTGTCCACTGCTCTCTCCGCCTCGTCATTACTTGGACAGTATGAACTGGGCAGACTATCAGGTGGAAAGCGAGTCAAATTTAAGCTTGTGGAGCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0001558 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009889 GO:0009987 GO:0010035 GO:0010371 GO:0010468 GO:0010556 GO:0010565 GO:0010817 GO:0016143 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0019748 GO:0019757 GO:0019760 GO:0022603 GO:0022604 GO:0031323 GO:0031326 GO:0032350 GO:0040008 GO:0040034 GO:0042221 GO:0043436 GO:0043455 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0046885 GO:0046890 GO:0048506 GO:0048509 GO:0048510 GO:0048638 GO:0050789 GO:0050793 GO:0050794 GO:0050826 GO:0050896 GO:0051128 GO:0051171 GO:0051252 GO:0051510 GO:0060255 GO:0062012 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

275

Amino Acids

31.18

Weight (kDa)

8.25

Isoelectric Point (pI)

64.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	103 - 153	2.5e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000958)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12610 AT1G63030 AT1G63030
fragaria_vesca	FvH4_5g01440
malus_domestica	MD04G1067800.v1.1 MD04G1067900.v1.1 MD06G1072300.v1.1
prunus_persica	Prupe.5G089900_v2.0.a1 Prupe.5G090000_v2.0.a1 Prupe.5G090100_v2.0.a1 Prupe.5G090200_v2.0.a1 Prupe.5G090500_v2.0.a1
pyrus_communis	pycom04g06140 pycom06g07110 pycom06g07120
rosa_chinensis	RchiOBHm_Chr7g0199251 RchiOBHm_Chr7g0199301 RchiOBHm_Chr7g0199331 RchiOBHm_Chr7g0199351 RchiOBHm_Chr7g0199381
rosa_laevigata	RLG00000002739 RLG00000002740 RLG00000003796 RLG00000003799 RLG00000003801
rosa_multiflora	Rmu_co8046292.1_g000001 Rmu_co8280319.1_g000001 Rmu_sc0000855.1_g000009 Rmu_sc0000950.1_g000001 Rmu_sc0000950.1_g000005 Rmu_sc0007820.1_g000002 Rmu_sc0010720.1_g000001 Rmu_sc0039534.1_g000001
rosa_roxburghii	Rroxscaffold_3G00256750 Rroxscaffold_3G00256770 Rroxscaffold_3G00256870 Rroxscaffold_5G00359530
rosa_rugosa	Rorug07G0053500 Rorug07G0053500 Rorug07G0053500 Rorug07G0053800
rosa_samantha	Rh4BG264100 Rh7AG177700 Rh7AG177900 Rh7AG178000 Rh7AG178100 Rh7AG178600 Rh7BG181300 Rh7BG181400 Rh7BG181600 Rh7BG181900 Rh7BG182100 Rh7CG186800 Rh7CG187000 Rh7CG187200 Rh7CG187400 Rh7DG180800 Rh7DG181700
rosa_wichuraiana	Rw7G015620 Rw7G015630 Rw7G015650 Rw7G015670 Rw7G015680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	203
Acc36I	ACCTGC	1 cut(s)	528
AccB7I	CCANNNNNTGG	1 cut(s)	387
AccBSI	CCGCTC	2 cut(s)	239, 422
AccI	GTMKAC	1 cut(s)	312
AccII	CGCG	1 cut(s)	318
AcoI	YGGCCR	1 cut(s)	417
AcsI	RAATTY	3 cut(s)	384, 578, 805
AcyI	GRCGYC	1 cut(s)	588
AdeI	CACNNNGTG	1 cut(s)	436
AfaI	GTAC	2 cut(s)	32, 401
AfiI	CCNNNNNNNGG	2 cut(s)	387, 456
AgsI	TTSAA	1 cut(s)	292
AluBI	AGCT	8 cut(s)	74, 92, 111, 124, 526, 600, 813, 822
AluI	AGCT	8 cut(s)	74, 92, 111, 124, 526, 600, 813, 822
Alw26I	GTCTC	4 cut(s)	163, 290, 554, 595
Ama87I	CYCGRG	2 cut(s)	176, 423
AoxI	GGCC	4 cut(s)	260, 417, 447, 569
ApeKI	GCWGC	3 cut(s)	554, 597, 600
ApoI	RAATTY	3 cut(s)	384, 578, 805
AspLEI	GCGC	2 cut(s)	430, 691
AspS9I	GGNCC	2 cut(s)	448, 540
AsuC2I	CCSGG	1 cut(s)	308
AsuHPI	GGTGA	2 cut(s)	213, 253
AvaI	CYCGRG	2 cut(s)	176, 423
AvaII	GGWCC	1 cut(s)	540
AxyI	CCTNAGG	2 cut(s)	452, 573
BauI	CACGAG	1 cut(s)	199
BbsI	GAAGAC	1 cut(s)	177
BbvI	GCAGC	3 cut(s)	541, 587, 609
BccI	CCATC	5 cut(s)	173, 409, 610, 637, 659
BceAI	ACGGC	1 cut(s)	201
BcnI	CCSGG	1 cut(s)	308
BcoDI	GTCTC	4 cut(s)	163, 290, 554, 595
BfaI	CTAG	1 cut(s)	717
BfoI	RGCGCY	1 cut(s)	692
BfuAI	ACCTGC	1 cut(s)	528
BglI	GCCNNNNNGGC	2 cut(s)	425, 551
BisI	GCNGC	8 cut(s)	319, 420, 441, 546, 555, 586, 598, 601
BlsI	GCNGC	8 cut(s)	320, 421, 442, 547, 556, 587, 599, 602
Bme1390I	CCNGG	1 cut(s)	308
Bme18I	GGWCC	1 cut(s)	540
BmeT110I	CYCGRG	2 cut(s)	176, 423
BmgT120I	GGNCC	2 cut(s)	448, 540
BmiI	GGNNCC	1 cut(s)	366
BmrFI	CCNGG	1 cut(s)	308
BmrI	ACTGGG	1 cut(s)	784
BmuI	ACTGGG	1 cut(s)	784
BpiI	GAAGAC	1 cut(s)	177
Bpu10I	CCTNAGC	1 cut(s)	329
BpuEI	CTTGAG	1 cut(s)	577
BpuMI	CCSGG	1 cut(s)	308
BsaHI	GRCGYC	1 cut(s)	588
BsaJI	CCNNGG	2 cut(s)	316, 549
Bsc4I	CCNNNNNNNGG	2 cut(s)	387, 456
Bse118I	RCCGGY	1 cut(s)	275
Bse1I	ACTGG	2 cut(s)	26, 779
Bse21I	CCTNAGG	2 cut(s)	452, 573
BseDI	CCNNGG	2 cut(s)	316, 549
BseLI	CCNNNNNNNGG	2 cut(s)	387, 456
BseMII	CTCAG	6 cut(s)	84, 113, 141, 343, 549, 564
BseNI	ACTGG	2 cut(s)	26, 779
BseRI	GAGGAG	1 cut(s)	151
BseXI	GCAGC	3 cut(s)	541, 587, 609
BseYI	CCCAGC	1 cut(s)	391
Bsh1236I	CGCG	1 cut(s)	318
BshFI	GGCC	4 cut(s)	262, 419, 449, 571
BsiHKCI	CYCGRG	2 cut(s)	176, 423
BsiSI	CCGG	3 cut(s)	276, 308, 509
BslFI	GGGAC	1 cut(s)	409
BslI	CCNNNNNNNGG	2 cut(s)	387, 456
BsmAI	GTCTC	4 cut(s)	163, 290, 554, 595
BsmBI	CGTCTC	1 cut(s)	595
BsmFI	GGGAC	1 cut(s)	409
BsnI	GGCC	4 cut(s)	262, 419, 449, 571
BsoBI	CYCGRG	2 cut(s)	176, 423
BspANI	GGCC	4 cut(s)	262, 419, 449, 571
BspCNI	CTCAG	6 cut(s)	83, 112, 140, 342, 550, 565
BspFNI	CGCG	1 cut(s)	318
BspLI	GGNNCC	1 cut(s)	366
BspMI	ACCTGC	1 cut(s)	528
BspQI	GCTCTTC	1 cut(s)	698
BsrBI	CCGCTC	2 cut(s)	239, 422
BsrFI	RCCGGY	1 cut(s)	275
BsrI	ACTGG	2 cut(s)	26, 779
BssAI	RCCGGY	1 cut(s)	275
BssECI	CCNNGG	2 cut(s)	316, 549
BssNI	GRCGYC	1 cut(s)	588
BssSI	CACGAG	1 cut(s)	199
Bst2BI	CACGAG	1 cut(s)	199
Bst4CI	ACNGT	2 cut(s)	409, 767
Bst6I	CTCTTC	2 cut(s)	678, 698
BstACI	GRCGYC	1 cut(s)	588
BstC8I	GCNNGC	4 cut(s)	260, 273, 465, 469
BstDEI	CTNAG	8 cut(s)	70, 75, 99, 127, 329, 452, 558, 573
BstDSI	CCRYGG	1 cut(s)	316
BstFNI	CGCG	1 cut(s)	318
BstH2I	RGCGCY	1 cut(s)	692
BstHHI	GCGC	2 cut(s)	430, 691
BstMAI	GTCTC	4 cut(s)	163, 290, 554, 595
BstNSI	RCATGY	2 cut(s)	471, 703
BstSCI	CCNGG	1 cut(s)	306
BstUI	CGCG	1 cut(s)	318
BstV1I	GCAGC	3 cut(s)	541, 587, 609
BstV2I	GAAGAC	1 cut(s)	177
Bsu36I	CCTNAGG	2 cut(s)	452, 573
BsuRI	GGCC	4 cut(s)	262, 419, 449, 571
BtgI	CCRYGG	1 cut(s)	316
BtsI	GCAGTG	1 cut(s)	734
BtsIMutI	CAGTG	2 cut(s)	33, 734
BveI	ACCTGC	1 cut(s)	528
Cac8I	GCNNGC	4 cut(s)	260, 273, 465, 469
CfoI	GCGC	2 cut(s)	430, 691
Cfr10I	RCCGGY	1 cut(s)	275
Cfr13I	GGNCC	2 cut(s)	448, 540
Cfr42I	CCGCGG	1 cut(s)	319
CseI	GACGC	2 cut(s)	193, 577
Csp6I	GTAC	2 cut(s)	31, 400
CviAII	CATG	4 cut(s)	468, 623, 700, 721
CviQI	GTAC	2 cut(s)	31, 400
DdeI	CTNAG	8 cut(s)	70, 75, 99, 127, 329, 452, 558, 573
DraIII	CACNNNGTG	1 cut(s)	436
DrdI	GACNNNNNNGTC	1 cut(s)	203
DseDI	GACNNNNNNGTC	1 cut(s)	203
EaeI	YGGCCR	1 cut(s)	417
Eam1104I	CTCTTC	2 cut(s)	678, 698
EarI	CTCTTC	2 cut(s)	678, 698
EciI	GGCGGA	3 cut(s)	532, 735, 740
Eco47I	GGWCC	1 cut(s)	540
Eco81I	CCTNAGG	2 cut(s)	452, 573
Eco88I	CYCGRG	2 cut(s)	176, 423
EcoRI	GAATTC	1 cut(s)	578
Esp3I	CGTCTC	1 cut(s)	595
FaeI	CATG	4 cut(s)	471, 626, 703, 724
FaiI	YATR	7 cut(s)	6, 8, 469, 624, 701, 722, 770
FaqI	GGGAC	1 cut(s)	409
FatI	CATG	4 cut(s)	467, 622, 699, 720
FblI	GTMKAC	1 cut(s)	312
Fnu4HI	GCNGC	8 cut(s)	319, 420, 441, 546, 555, 586, 598, 601
Fsp4HI	GCNGC	8 cut(s)	319, 420, 441, 546, 555, 586, 598, 601
FspBI	CTAG	1 cut(s)	717
GlaI	GCGC	2 cut(s)	429, 690
GluI	GCNGC	8 cut(s)	319, 420, 441, 546, 555, 586, 598, 601
GsaI	CCCAGC	1 cut(s)	395
HaeII	RGCGCY	1 cut(s)	692
HaeIII	GGCC	4 cut(s)	262, 419, 449, 571
HapII	CCGG	3 cut(s)	276, 308, 509
HgaI	GACGC	2 cut(s)	193, 577
HhaI	GCGC	2 cut(s)	430, 691
Hin1I	GRCGYC	1 cut(s)	588
Hin1II	CATG	4 cut(s)	471, 626, 703, 724
Hin6I	GCGC	2 cut(s)	428, 689
HinP1I	GCGC	2 cut(s)	428, 689
HindIII	AAGCTT	1 cut(s)	811
HinfI	GANTC	7 cut(s)	131, 152, 179, 211, 298, 485, 800
HpaII	CCGG	3 cut(s)	276, 308, 509
HphI	GGTGA	2 cut(s)	213, 253
Hpy166II	GTNNAC	4 cut(s)	31, 221, 313, 734
Hpy188I	TCNGA	4 cut(s)	102, 130, 196, 232
Hpy188III	TCNNGA	2 cut(s)	208, 331
Hpy8I	GTNNAC	4 cut(s)	31, 221, 313, 734
Hpy99I	CGWCG	2 cut(s)	236, 608
HpyCH4III	ACNGT	2 cut(s)	409, 767
HpyCH4IV	ACGT	1 cut(s)	398
HpyF3I	CTNAG	8 cut(s)	70, 75, 99, 127, 329, 452, 558, 573
HpySE526I	ACGT	1 cut(s)	398
Hsp92I	GRCGYC	1 cut(s)	588
Hsp92II	CATG	4 cut(s)	471, 626, 703, 724
HspAI	GCGC	2 cut(s)	428, 689
KspI	CCGCGG	1 cut(s)	319
LguI	GCTCTTC	1 cut(s)	698
LmnI	GCTCC	4 cut(s)	116, 236, 364, 819
Lsp1109I	GCAGC	3 cut(s)	541, 587, 609
MaeI	CTAG	1 cut(s)	717
MaeII	ACGT	1 cut(s)	398
MaeIII	GTNAC	1 cut(s)	205
MbiI	CCGCTC	2 cut(s)	239, 422
MboII	GAAGA	6 cut(s)	177, 277, 667, 670, 685, 695
MluCI	AATT	6 cut(s)	115, 384, 475, 578, 636, 805
MlyI	GAGTC	5 cut(s)	125, 188, 205, 292, 809
MmeI	TCCRAC	2 cut(s)	159, 255
MseI	TTAA	1 cut(s)	809
MslI	CAYNNNNRTG	1 cut(s)	627
MspA1I	CMGCKG	2 cut(s)	318, 600
MspI	CCGG	3 cut(s)	276, 308, 509
MspR9I	CCNGG	1 cut(s)	308
MvnI	CGCG	1 cut(s)	318
NciI	CCSGG	1 cut(s)	308
NlaIII	CATG	4 cut(s)	471, 626, 703, 724
NlaIV	GGNNCC	1 cut(s)	366
NmeAIII	GCCGAG	1 cut(s)	574
NmuCI	GTSAC	1 cut(s)	205
NspI	RCATGY	2 cut(s)	471, 703
PaeI	GCATGC	1 cut(s)	471
PciSI	GCTCTTC	1 cut(s)	698
PcsI	WCGNNNNNNNCGW	3 cut(s)	174, 206, 260
PfeI	GAWTC	2 cut(s)	152, 485
PflMI	CCANNNNNTGG	1 cut(s)	387
PkrI	GCNGC	8 cut(s)	320, 421, 442, 547, 556, 587, 599, 602
PleI	GAGTC	5 cut(s)	125, 187, 205, 292, 808
PpsI	GAGTC	5 cut(s)	125, 187, 205, 292, 808
PspFI	CCCAGC	1 cut(s)	391
PspN4I	GGNNCC	1 cut(s)	366
PspPI	GGNCC	2 cut(s)	448, 540
PvuII	CAGCTG	1 cut(s)	600
RsaI	GTAC	2 cut(s)	32, 401
RsaNI	GTAC	2 cut(s)	31, 400
RseI	CAYNNNNRTG	1 cut(s)	627
SacII	CCGCGG	1 cut(s)	319
SapI	GCTCTTC	1 cut(s)	698
SaqAI	TTAA	1 cut(s)	809
SatI	GCNGC	8 cut(s)	319, 420, 441, 546, 555, 586, 598, 601
Sau96I	GGNCC	2 cut(s)	448, 540
SchI	GAGTC	5 cut(s)	125, 188, 205, 292, 809
ScrFI	CCNGG	1 cut(s)	308
Sfr303I	CCGCGG	1 cut(s)	319
SgrBI	CCGCGG	1 cut(s)	319
SinI	GGWCC	1 cut(s)	540
SmiMI	CAYNNNNRTG	1 cut(s)	627
SmlI	CTYRAG	1 cut(s)	592
SmoI	CTYRAG	1 cut(s)	592
SphI	GCATGC	1 cut(s)	471
Sse9I	AATT	6 cut(s)	115, 384, 475, 578, 636, 805
SspMI	CTAG	1 cut(s)	717
StyD4I	CCNGG	1 cut(s)	306
TaaI	ACNGT	2 cut(s)	409, 767
TaiI	ACGT	1 cut(s)	401
TaqI	TCGA	5 cut(s)	150, 168, 254, 528, 696
TasI	AATT	6 cut(s)	115, 384, 475, 578, 636, 805
TatI	WGTACW	1 cut(s)	30
TauI	GCSGC	5 cut(s)	321, 422, 443, 548, 588
TfiI	GAWTC	2 cut(s)	152, 485
Tru1I	TTAA	1 cut(s)	809
Tru9I	TTAA	1 cut(s)	809
TscAI	CASTG	2 cut(s)	33, 741
TseFI	GTSAC	1 cut(s)	205
TseI	GCWGC	3 cut(s)	554, 597, 600
Tsp45I	GTSAC	1 cut(s)	205
TspDTI	ATGAA	2 cut(s)	119, 785
TspGWI	ACGGA	1 cut(s)	249
TspRI	CASTG	2 cut(s)	33, 741
Van91I	CCANNNNNTGG	1 cut(s)	387
VpaK11BI	GGWCC	1 cut(s)	540
XapI	RAATTY	3 cut(s)	384, 578, 805
XceI	RCATGY	2 cut(s)	471, 703
XcmI	CCANNNNNNNNNTGG	1 cut(s)	388
XmiI	GTMKAC	1 cut(s)	312
XspI	CTAG	1 cut(s)	717

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.