Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0000958

Physical Location & Seq

Genomic Coordinates Reverse (-)

10059123 .. 10059821

Gene Structure 699 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G090200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGATTTGATCTACAGCCAGGTCTCTGATTTGGCTTCTCTGGAAAACCCGGATACGTCGTCGTTTTGGAACGCCAGCGTCACGGCCCGGCGAGCTTCACTTTCAGTTGAGGAGGTCATACTGGCGTCCAGCTGCCCGAAAAGGCGGGCGGGGAGGAGGGTTTTCAAGGAGACCAGGCACCCGGTTTATAGGGGTGTGAGGAGGAGGAACAACGACAAGTGGGTGTGTGAGCTGAGAGACCCCAACAACAAGAAGGCCAGGATATGGCTCGGGACTTATCCGAAGGCTGAGATGGCGGCTCGTGCCCATGACGTCGCTGCATTGGCGTTTAGGGGGAAGCTTGCCTGCCTCAACTTTGCTGACTCGGCTTGGCGACTGCCCGTGCCGGCCTCCAACGATGCCGCGGAGATTAGGAGGGTGGCCAACGAGGCGGCTGAAGCGTTTAGGAAAGCGGAGGATGGTGGTGTTGATGAGAAGGAGAGTAAGGGGGTGGTGAATGAGGAGAAGGGTTGTGTAGAAATGGAGGGAAGCAGCAACTTGTTTTATTTGGACGAGGAGGAAATATTTGAGATGCCAAGGTTGCTTGATGACATGGCTGAAGGGCTTATGCTTTGTCCACCTCAGTGCTTAGATGGCTACATGGATTGGAATGACGTGGGAACTGATGATGATTTGAAACTGTGGAGTTTTACTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0001558 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009889 GO:0009987 GO:0010035 GO:0010371 GO:0010468 GO:0010556 GO:0010565 GO:0010817 GO:0016143 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0019748 GO:0019757 GO:0019760 GO:0022603 GO:0022604 GO:0031323 GO:0031326 GO:0032350 GO:0040008 GO:0040034 GO:0042221 GO:0043436 GO:0043455 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0046885 GO:0046890 GO:0048506 GO:0048509 GO:0048510 GO:0048638 GO:0050789 GO:0050793 GO:0050794 GO:0050826 GO:0050896 GO:0051128 GO:0051171 GO:0051252 GO:0051510 GO:0060255 GO:0062012 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

233

Amino Acids

26.16

Weight (kDa)

5.03

Isoelectric Point (pI)

53.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000958)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12610 AT1G63030 AT1G63030
fragaria_vesca	FvH4_5g01440
malus_domestica	MD04G1067800.v1.1 MD04G1067900.v1.1 MD06G1072300.v1.1
prunus_persica	Prupe.5G089900_v2.0.a1 Prupe.5G090000_v2.0.a1 Prupe.5G090100_v2.0.a1 Prupe.5G090200_v2.0.a1 Prupe.5G090500_v2.0.a1
pyrus_communis	pycom04g06140 pycom06g07110 pycom06g07120
rosa_chinensis	RchiOBHm_Chr7g0199251 RchiOBHm_Chr7g0199301 RchiOBHm_Chr7g0199331 RchiOBHm_Chr7g0199351 RchiOBHm_Chr7g0199381
rosa_laevigata	RLG00000002739 RLG00000002740 RLG00000003796 RLG00000003799 RLG00000003801
rosa_multiflora	Rmu_co8046292.1_g000001 Rmu_co8280319.1_g000001 Rmu_sc0000855.1_g000009 Rmu_sc0000950.1_g000001 Rmu_sc0000950.1_g000005 Rmu_sc0007820.1_g000002 Rmu_sc0010720.1_g000001 Rmu_sc0039534.1_g000001
rosa_roxburghii	Rroxscaffold_3G00256750 Rroxscaffold_3G00256770 Rroxscaffold_3G00256870 Rroxscaffold_5G00359530
rosa_rugosa	Rorug07G0053500 Rorug07G0053500 Rorug07G0053500 Rorug07G0053800
rosa_samantha	Rh4BG264100 Rh7AG177700 Rh7AG177900 Rh7AG178000 Rh7AG178100 Rh7AG178600 Rh7BG181300 Rh7BG181400 Rh7BG181600 Rh7BG181900 Rh7BG182100 Rh7CG186800 Rh7CG187000 Rh7CG187200 Rh7CG187400 Rh7DG180800 Rh7DG181700
rosa_wichuraiana	Rw7G015620 Rw7G015630 Rw7G015650 Rw7G015670 Rw7G015680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	315
AccB1I	GGYRCC	1 cut(s)	177
AccB7I	CCANNNNNTGG	1 cut(s)	264
AccII	CGCG	1 cut(s)	404
AciI	CCGC	7 cut(s)	145, 149, 296, 402, 404, 431, 452
AcoI	YGGCCR	1 cut(s)	420
AcuI	CTGAAG	2 cut(s)	456, 618
AcyI	GRCGYC	2 cut(s)	125, 312
AfiI	CCNNNNNNNGG	1 cut(s)	264
AgsI	TTSAA	2 cut(s)	166, 676
AjiI	CACGTC	1 cut(s)	655
AjnI	CCWGG	3 cut(s)	18, 173, 257
AleI	CACNNNNGTG	1 cut(s)	622
AluBI	AGCT	4 cut(s)	95, 132, 232, 340
AluI	AGCT	4 cut(s)	95, 132, 232, 340
Alw26I	GTCTC	3 cut(s)	28, 164, 231
Ama87I	CYCGRG	1 cut(s)	269
AoxI	GGCC	4 cut(s)	84, 255, 387, 420
ApeKI	GCWGC	3 cut(s)	132, 317, 531
AspS9I	GGNCC	1 cut(s)	85
AsuC2I	CCSGG	3 cut(s)	50, 88, 182
AsuHPI	GGTGA	1 cut(s)	505
AvaI	CYCGRG	1 cut(s)	269
BaeGI	GKGCMC	1 cut(s)	307
BalI	TGGCCA	1 cut(s)	422
BanI	GGYRCC	1 cut(s)	177
BauI	CACGAG	1 cut(s)	300
BbvI	GCAGC	3 cut(s)	119, 304, 543
BccI	CCATC	3 cut(s)	286, 452, 626
BceAI	ACGGC	1 cut(s)	99
BciT130I	CCWGG	3 cut(s)	20, 175, 259
BciVI	GTATCC	1 cut(s)	46
BcnI	CCSGG	3 cut(s)	50, 88, 182
BcoDI	GTCTC	3 cut(s)	28, 164, 231
BfmI	CTRYAG	1 cut(s)	13
BfuI	GTATCC	1 cut(s)	46
BglI	GCCNNNNNGGC	1 cut(s)	428
BisI	GCNGC	6 cut(s)	133, 297, 318, 402, 432, 532
BlsI	GCNGC	6 cut(s)	134, 298, 319, 403, 433, 533
Bme1390I	CCNGG	6 cut(s)	20, 50, 88, 175, 182, 259
BmeT110I	CYCGRG	1 cut(s)	269
BmgBI	CACGTC	1 cut(s)	655
BmgT120I	GGNCC	1 cut(s)	85
BmiI	GGNNCC	1 cut(s)	179
BmrFI	CCNGG	6 cut(s)	20, 50, 88, 175, 182, 259
BmsI	GCATC	2 cut(s)	388, 561
BpuMI	CCSGG	3 cut(s)	50, 88, 182
BsaHI	GRCGYC	2 cut(s)	125, 312
BsaI	GGTCTC	3 cut(s)	28, 164, 231
BsaJI	CCNNGG	2 cut(s)	402, 575
Bsc4I	CCNNNNNNNGG	1 cut(s)	264
Bse118I	RCCGGY	1 cut(s)	385
Bse1I	ACTGG	1 cut(s)	126
BseBI	CCWGG	3 cut(s)	20, 175, 259
BseDI	CCNNGG	2 cut(s)	402, 575
BseGI	GGATG	1 cut(s)	463
BseLI	CCNNNNNNNGG	1 cut(s)	264
BseMII	CTCAG	3 cut(s)	224, 279, 635
BseNI	ACTGG	1 cut(s)	126
BseRI	GAGGAG	6 cut(s)	125, 169, 214, 217, 515, 569
BseSI	GKGCMC	1 cut(s)	307
BseXI	GCAGC	3 cut(s)	119, 304, 543
Bsh1236I	CGCG	1 cut(s)	404
BshFI	GGCC	4 cut(s)	86, 257, 389, 422
BshNI	GGYRCC	1 cut(s)	177
BsiHKCI	CYCGRG	1 cut(s)	269
BsiSI	CCGG	4 cut(s)	50, 88, 182, 386
BslFI	GGGAC	1 cut(s)	286
BslI	CCNNNNNNNGG	1 cut(s)	264
BsmAI	GTCTC	3 cut(s)	28, 164, 231
BsmFI	GGGAC	1 cut(s)	286
BsnI	GGCC	4 cut(s)	86, 257, 389, 422
Bso31I	GGTCTC	3 cut(s)	28, 164, 231
BsoBI	CYCGRG	1 cut(s)	269
Bsp1286I	GDGCHC	1 cut(s)	307
Bsp143I	GATC	1 cut(s)	9
BspACI	CCGC	7 cut(s)	145, 149, 296, 402, 404, 431, 452
BspANI	GGCC	4 cut(s)	86, 257, 389, 422
BspCNI	CTCAG	3 cut(s)	225, 280, 634
BspFNI	CGCG	1 cut(s)	404
BspLI	GGNNCC	1 cut(s)	179
BspT107I	GGYRCC	1 cut(s)	177
BspTNI	GGTCTC	3 cut(s)	28, 164, 231
BsrFI	RCCGGY	1 cut(s)	385
BsrI	ACTGG	1 cut(s)	126
BssAI	RCCGGY	1 cut(s)	385
BssECI	CCNNGG	2 cut(s)	402, 575
BssMI	GATC	1 cut(s)	9
BssNI	GRCGYC	2 cut(s)	125, 312
BssSI	CACGAG	1 cut(s)	300
BssT1I	CCWWGG	1 cut(s)	575
Bst2BI	CACGAG	1 cut(s)	300
Bst2UI	CCWGG	3 cut(s)	20, 175, 259
Bst4CI	ACNGT	1 cut(s)	681
BstACI	GRCGYC	2 cut(s)	125, 312
BstC8I	GCNNGC	6 cut(s)	76, 93, 147, 342, 346, 387
BstDEI	CTNAG	4 cut(s)	233, 288, 621, 628
BstDSI	CCRYGG	1 cut(s)	402
BstF5I	GGATG	1 cut(s)	463
BstFNI	CGCG	1 cut(s)	404
BstKTI	GATC	1 cut(s)	12
BstMAI	GTCTC	3 cut(s)	28, 164, 231
BstMBI	GATC	1 cut(s)	9
BstMWI	GCNNNNNNNGC	9 cut(s)	92, 293, 302, 323, 365, 428, 437, 580, 633
BstNI	CCWGG	3 cut(s)	20, 175, 259
BstSCI	CCNGG	6 cut(s)	18, 48, 86, 173, 180, 257
BstSFI	CTRYAG	1 cut(s)	13
BstSLI	GKGCMC	1 cut(s)	307
BstUI	CGCG	1 cut(s)	404
BstV1I	GCAGC	3 cut(s)	119, 304, 543
BsuI	GTATCC	1 cut(s)	46
BsuRI	GGCC	4 cut(s)	86, 257, 389, 422
BtgI	CCRYGG	1 cut(s)	402
BtrI	CACGTC	1 cut(s)	655
BtsCI	GGATG	1 cut(s)	463
BtsIMutI	CAGTG	1 cut(s)	629
Cac8I	GCNNGC	6 cut(s)	76, 93, 147, 342, 346, 387
Cfr10I	RCCGGY	1 cut(s)	385
Cfr13I	GGNCC	1 cut(s)	85
Cfr42I	CCGCGG	1 cut(s)	405
CseI	GACGC	2 cut(s)	67, 114
CviAII	CATG	3 cut(s)	308, 592, 640
DdeI	CTNAG	4 cut(s)	233, 288, 621, 628
DpnI	GATC	1 cut(s)	11
DpnII	GATC	1 cut(s)	9
EaeI	YGGCCR	1 cut(s)	420
Eco130I	CCWWGG	1 cut(s)	575
Eco31I	GGTCTC	3 cut(s)	28, 164, 231
Eco57I	CTGAAG	2 cut(s)	456, 618
Eco88I	CYCGRG	1 cut(s)	269
EcoRII	CCWGG	3 cut(s)	18, 173, 257
EcoT14I	CCWWGG	1 cut(s)	575
ErhI	CCWWGG	1 cut(s)	575
FaeI	CATG	3 cut(s)	311, 595, 643
FaiI	YATR	7 cut(s)	119, 189, 265, 309, 593, 608, 641
FaqI	GGGAC	1 cut(s)	286
FatI	CATG	3 cut(s)	307, 591, 639
FauI	CCCGC	2 cut(s)	138, 142
Fnu4HI	GCNGC	6 cut(s)	133, 297, 318, 402, 432, 532
FokI	GGATG	1 cut(s)	470
Fsp4HI	GCNGC	6 cut(s)	133, 297, 318, 402, 432, 532
GluI	GCNGC	6 cut(s)	133, 297, 318, 402, 432, 532
HaeIII	GGCC	4 cut(s)	86, 257, 389, 422
HapII	CCGG	4 cut(s)	50, 88, 182, 386
HgaI	GACGC	2 cut(s)	67, 114
Hin1I	GRCGYC	2 cut(s)	125, 312
Hin1II	CATG	3 cut(s)	311, 595, 643
HindIII	AAGCTT	1 cut(s)	338
HinfI	GANTC	1 cut(s)	362
HpaII	CCGG	4 cut(s)	50, 88, 182, 386
HphI	GGTGA	1 cut(s)	505
Hpy166II	GTNNAC	1 cut(s)	617
Hpy188I	TCNGA	2 cut(s)	28, 282
Hpy188III	TCNNGA	2 cut(s)	41, 271
Hpy8I	GTNNAC	1 cut(s)	617
Hpy99I	CGWCG	3 cut(s)	61, 64, 317
HpyAV	CCTTC	5 cut(s)	247, 277, 469, 499, 593
HpyCH4III	ACNGT	1 cut(s)	681
HpyCH4IV	ACGT	3 cut(s)	56, 312, 654
HpyCH4V	TGCA	1 cut(s)	320
HpyF10VI	GCNNNNNNNGC	9 cut(s)	92, 293, 302, 323, 365, 428, 437, 580, 633
HpyF3I	CTNAG	4 cut(s)	233, 288, 621, 628
HpySE526I	ACGT	3 cut(s)	56, 312, 654
Hsp92I	GRCGYC	2 cut(s)	125, 312
Hsp92II	CATG	3 cut(s)	311, 595, 643
KroI	GCCGGC	1 cut(s)	385
KroNI	GCCGGC	1 cut(s)	387
KspI	CCGCGG	1 cut(s)	405
Kzo9I	GATC	1 cut(s)	9
Lsp1109I	GCAGC	3 cut(s)	119, 304, 543
LweI	GCATC	2 cut(s)	388, 561
MaeII	ACGT	3 cut(s)	56, 312, 654
MaeIII	GTNAC	1 cut(s)	79
MalI	GATC	1 cut(s)	11
MboI	GATC	1 cut(s)	9
MhlI	GDGCHC	1 cut(s)	307
MlsI	TGGCCA	1 cut(s)	422
MluNI	TGGCCA	1 cut(s)	422
MlyI	GAGTC	1 cut(s)	356
MmeI	TCCRAC	1 cut(s)	417
Mox20I	TGGCCA	1 cut(s)	422
MroNI	GCCGGC	1 cut(s)	385
MscI	TGGCCA	1 cut(s)	422
MslI	CAYNNNNRTG	1 cut(s)	622
Msp20I	TGGCCA	1 cut(s)	422
MspA1I	CMGCKG	2 cut(s)	132, 404
MspI	CCGG	4 cut(s)	50, 88, 182, 386
MspR9I	CCNGG	6 cut(s)	20, 50, 88, 175, 182, 259
MvaI	CCWGG	3 cut(s)	20, 175, 259
MvnI	CGCG	1 cut(s)	404
MwoI	GCNNNNNNNGC	9 cut(s)	92, 293, 302, 323, 365, 428, 437, 580, 633
NaeI	GCCGGC	1 cut(s)	387
NciI	CCSGG	3 cut(s)	50, 88, 182
NdeII	GATC	1 cut(s)	9
NgoMIV	GCCGGC	1 cut(s)	385
NlaIII	CATG	3 cut(s)	311, 595, 643
NlaIV	GGNNCC	1 cut(s)	179
NmeAIII	GCCGAG	1 cut(s)	344
NmuCI	GTSAC	1 cut(s)	79
OliI	CACNNNNGTG	1 cut(s)	622
PdiI	GCCGGC	1 cut(s)	387
PflMI	CCANNNNNTGG	1 cut(s)	264
PkrI	GCNGC	6 cut(s)	134, 298, 319, 403, 433, 533
PleI	GAGTC	1 cut(s)	356
PpsI	GAGTC	1 cut(s)	356
Psp6I	CCWGG	3 cut(s)	18, 173, 257
PspGI	CCWGG	3 cut(s)	18, 173, 257
PspN4I	GGNNCC	1 cut(s)	179
PspPI	GGNCC	1 cut(s)	85
PvuII	CAGCTG	1 cut(s)	132
RseI	CAYNNNNRTG	1 cut(s)	622
SacII	CCGCGG	1 cut(s)	405
SatI	GCNGC	6 cut(s)	133, 297, 318, 402, 432, 532
Sau3AI	GATC	1 cut(s)	9
Sau96I	GGNCC	1 cut(s)	85
SchI	GAGTC	1 cut(s)	356
ScrFI	CCNGG	6 cut(s)	20, 50, 88, 175, 182, 259
SduI	GDGCHC	1 cut(s)	307
SfaNI	GCATC	2 cut(s)	388, 561
SfcI	CTRYAG	1 cut(s)	13
Sfr303I	CCGCGG	1 cut(s)	405
SgrBI	CCGCGG	1 cut(s)	405
SmiMI	CAYNNNNRTG	1 cut(s)	622
SsiI	CCGC	7 cut(s)	145, 149, 296, 402, 404, 431, 452
SspI	AATATT	1 cut(s)	564
StyD4I	CCNGG	6 cut(s)	18, 48, 86, 173, 180, 257
StyI	CCWWGG	1 cut(s)	575
TaaI	ACNGT	1 cut(s)	681
TaiI	ACGT	3 cut(s)	59, 315, 657
TauI	GCSGC	3 cut(s)	299, 404, 434
TscAI	CASTG	1 cut(s)	629
TseFI	GTSAC	1 cut(s)	79
TseI	GCWGC	3 cut(s)	132, 317, 531
Tsp45I	GTSAC	1 cut(s)	79
TspRI	CASTG	1 cut(s)	629
Van91I	CCANNNNNTGG	1 cut(s)	264
ZraI	GACGTC	1 cut(s)	313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.