Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0000958

Physical Location & Seq

Genomic Coordinates Reverse (-)

10052497 .. 10053666

Gene Structure 1170 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G090000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGACATGTTCTCCGCTCAGCTTTCTGACTCCCCCGACCAGCCTGAGTCGAGTTCTTTCTCCGACGCCAGCGTCACCACCCTGCCGGCATCTTCCTCCGACGAAAACGTCATATTGGCGTCGAGCCGGCCGAAGAAGCGCGCTGGGAGGAGGGTTTTCAAGGAGACGAGGCACCCGGTTTACAGGGGCGTGAGGAGAAGGAACAACAACAAGTGGGTATGTGAGTTGAGAGAACCCAACAACAAGAAGTCAAGGATTTGGCTTGGAACGTATCCGACGGCTGAGATGGCTGCTCGTGCCCATGACGTGGCGGCATTGGCGTTCAGAGGGAAGCTTGCCTGCATAAACTTTGCTGACTCCGCATGGCGGCTGCCCTTGCCGGCTTCCATGGACACCATGGATATTCGAAGGGCAGCCGCTGAGGCCGCCGAAGGGTTCAGGCCTGCGGAGTTCGGTGGATTATCCAGCGGCAGCAGTGATGAGAAGGAGATGAATTTAAGCGTGGATATGGAAAAAAACAGCAGCTTGTGCTTGTTTTATTTGGATGAGGAGGAAATGTTTGATATGCCAAGGTTGATTGATAACATGGCTCAAGGGCTTCTTCTTTCTCCACCTCAATGCTCAGCTGGCTACTTGAATTGGGATGACGTGGAAACTGAAGCTGATGCCAAATTATGGAGTTTCTCTATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0001558 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009889 GO:0009987 GO:0010035 GO:0010371 GO:0010468 GO:0010556 GO:0010565 GO:0010817 GO:0016143 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0019748 GO:0019757 GO:0019760 GO:0022603 GO:0022604 GO:0031323 GO:0031326 GO:0032350 GO:0040008 GO:0040034 GO:0042221 GO:0043436 GO:0043455 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0046885 GO:0046890 GO:0048506 GO:0048509 GO:0048510 GO:0048638 GO:0050789 GO:0050793 GO:0050794 GO:0050826 GO:0050896 GO:0051128 GO:0051171 GO:0051252 GO:0051510 GO:0060255 GO:0062012 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

231

Amino Acids

25.66

Weight (kDa)

5.13

Isoelectric Point (pI)

57.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000958)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12610 AT1G63030 AT1G63030
fragaria_vesca	FvH4_5g01440
malus_domestica	MD04G1067800.v1.1 MD04G1067900.v1.1 MD06G1072300.v1.1
prunus_persica	Prupe.5G089900_v2.0.a1 Prupe.5G090000_v2.0.a1 Prupe.5G090100_v2.0.a1 Prupe.5G090200_v2.0.a1 Prupe.5G090500_v2.0.a1
pyrus_communis	pycom04g06140 pycom06g07110 pycom06g07120
rosa_chinensis	RchiOBHm_Chr7g0199251 RchiOBHm_Chr7g0199301 RchiOBHm_Chr7g0199331 RchiOBHm_Chr7g0199351 RchiOBHm_Chr7g0199381
rosa_laevigata	RLG00000002739 RLG00000002740 RLG00000003796 RLG00000003799 RLG00000003801
rosa_multiflora	Rmu_co8046292.1_g000001 Rmu_co8280319.1_g000001 Rmu_sc0000855.1_g000009 Rmu_sc0000950.1_g000001 Rmu_sc0000950.1_g000005 Rmu_sc0007820.1_g000002 Rmu_sc0010720.1_g000001 Rmu_sc0039534.1_g000001
rosa_roxburghii	Rroxscaffold_3G00256750 Rroxscaffold_3G00256770 Rroxscaffold_3G00256870 Rroxscaffold_5G00359530
rosa_rugosa	Rorug07G0053500 Rorug07G0053500 Rorug07G0053500 Rorug07G0053800
rosa_samantha	Rh4BG264100 Rh7AG177700 Rh7AG177900 Rh7AG178000 Rh7AG178100 Rh7AG178600 Rh7BG181300 Rh7BG181400 Rh7BG181600 Rh7BG181900 Rh7BG182100 Rh7CG186800 Rh7CG187000 Rh7CG187200 Rh7CG187400 Rh7DG180800 Rh7DG181700
rosa_wichuraiana	Rw7G015620 Rw7G015630 Rw7G015650 Rw7G015670 Rw7G015680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	71, 107
AccB1I	GGYRCC	1 cut(s)	171
AccB7I	CCANNNNNTGG	2 cut(s)	307, 675
AccBSI	CCGCTC	1 cut(s)	17
AccII	CGCG	1 cut(s)	141
AciI	CCGC	8 cut(s)	15, 311, 360, 367, 417, 426, 446, 468
AcoI	YGGCCR	1 cut(s)	128
AcsI	RAATTY	1 cut(s)	493
AcuI	CTGAAG	1 cut(s)	678
AcyI	GRCGYC	2 cut(s)	66, 119
AfiI	CCNNNNNNNGG	4 cut(s)	307, 366, 432, 675
AflIII	ACRYGT	1 cut(s)	6
AgsI	TTSAA	2 cut(s)	160, 637
AjiI	CACGTC	2 cut(s)	307, 649
AluBI	AGCT	5 cut(s)	22, 334, 525, 626, 662
AluI	AGCT	5 cut(s)	22, 334, 525, 626, 662
Alw26I	GTCTC	1 cut(s)	158
AlwNI	CAGNNNCTG	1 cut(s)	419
AoxI	GGCC	3 cut(s)	128, 423, 440
ApeKI	GCWGC	5 cut(s)	290, 370, 413, 471, 522
ApoI	RAATTY	1 cut(s)	493
AspLEI	GCGC	2 cut(s)	141, 143
AsuC2I	CCSGG	1 cut(s)	176
AsuHPI	GGTGA	1 cut(s)	67
AsuII	TTCGAA	1 cut(s)	406
BaeGI	GKGCMC	1 cut(s)	301
BanI	GGYRCC	1 cut(s)	171
BauI	CACGAG	1 cut(s)	294
BbvCI	CCTCAGC	1 cut(s)	420
BbvI	GCAGC	5 cut(s)	277, 357, 425, 483, 534
BccI	CCATC	1 cut(s)	280
BceAI	ACGGC	1 cut(s)	294
BciVI	GTATCC	1 cut(s)	282
BcnI	CCSGG	1 cut(s)	176
BcoDI	GTCTC	1 cut(s)	158
BfuI	GTATCC	1 cut(s)	282
BglI	GCCNNNNNGGC	1 cut(s)	422
BlpI	GCTNAGC	2 cut(s)	18, 622
Bme1390I	CCNGG	1 cut(s)	176
BmgBI	CACGTC	2 cut(s)	307, 649
BmiI	GGNNCC	1 cut(s)	173
BmrFI	CCNGG	1 cut(s)	176
BmsI	GCATC	2 cut(s)	98, 655
Bpu10I	CCTNAGC	1 cut(s)	420
Bpu1102I	GCTNAGC	2 cut(s)	18, 622
Bpu14I	TTCGAA	1 cut(s)	406
BpuEI	CTTGAG	1 cut(s)	576
BpuMI	CCSGG	1 cut(s)	176
BsaHI	GRCGYC	2 cut(s)	66, 119
BsaJI	CCNNGG	3 cut(s)	387, 396, 569
BsaXI	ACNNNNNCTCC	3 cut(s)	26, 542, 572
Bsc4I	CCNNNNNNNGG	4 cut(s)	307, 366, 432, 675
Bse118I	RCCGGY	3 cut(s)	85, 126, 379
BseDI	CCNNGG	3 cut(s)	387, 396, 569
BseGI	GGATG	2 cut(s)	550, 649
BseLI	CCNNNNNNNGG	4 cut(s)	307, 366, 432, 675
BseMII	CTCAG	5 cut(s)	32, 36, 273, 411, 636
BsePI	GCGCGC	1 cut(s)	139
BseRI	GAGGAG	3 cut(s)	163, 208, 563
BseSI	GKGCMC	1 cut(s)	301
BseX3I	CGGCCG	1 cut(s)	128
BseXI	GCAGC	5 cut(s)	277, 357, 425, 483, 534
BseYI	CCCAGC	1 cut(s)	143
Bsh1236I	CGCG	1 cut(s)	141
Bsh1285I	CGRYCG	1 cut(s)	131
BshFI	GGCC	3 cut(s)	130, 425, 442
BshNI	GGYRCC	1 cut(s)	171
BsiEI	CGRYCG	1 cut(s)	131
BsiSI	CCGG	4 cut(s)	86, 127, 176, 380
BslI	CCNNNNNNNGG	4 cut(s)	307, 366, 432, 675
BsmAI	GTCTC	1 cut(s)	158
BsmBI	CGTCTC	1 cut(s)	158
BsnI	GGCC	3 cut(s)	130, 425, 442
Bsp119I	TTCGAA	1 cut(s)	406
Bsp1286I	GDGCHC	1 cut(s)	301
Bsp1720I	GCTNAGC	2 cut(s)	18, 622
Bsp19I	CCATGG	2 cut(s)	387, 396
BspACI	CCGC	8 cut(s)	15, 311, 360, 367, 417, 426, 446, 468
BspANI	GGCC	3 cut(s)	130, 425, 442
BspCNI	CTCAG	5 cut(s)	31, 37, 274, 412, 635
BspFNI	CGCG	1 cut(s)	141
BspLI	GGNNCC	1 cut(s)	173
BspT104I	TTCGAA	1 cut(s)	406
BspT107I	GGYRCC	1 cut(s)	171
BsrBI	CCGCTC	1 cut(s)	17
BsrFI	RCCGGY	3 cut(s)	85, 126, 379
BssAI	RCCGGY	3 cut(s)	85, 126, 379
BssECI	CCNNGG	3 cut(s)	387, 396, 569
BssHII	GCGCGC	1 cut(s)	139
BssNI	GRCGYC	2 cut(s)	66, 119
BssSI	CACGAG	1 cut(s)	294
BssT1I	CCWWGG	3 cut(s)	387, 396, 569
Bst2BI	CACGAG	1 cut(s)	294
BstACI	GRCGYC	2 cut(s)	66, 119
BstAPI	GCANNNNNTGC	1 cut(s)	528
BstBI	TTCGAA	1 cut(s)	406
BstC8I	GCNNGC	9 cut(s)	70, 87, 128, 141, 336, 340, 381, 444, 628
BstDEI	CTNAG	5 cut(s)	18, 45, 282, 420, 622
BstDSI	CCRYGG	2 cut(s)	387, 396
BstF5I	GGATG	2 cut(s)	550, 649
BstFNI	CGCG	1 cut(s)	141
BstHHI	GCGC	2 cut(s)	141, 143
BstMAI	GTCTC	1 cut(s)	158
BstMCI	CGRYCG	1 cut(s)	131
BstNSI	RCATGY	1 cut(s)	10
BstSCI	CCNGG	1 cut(s)	174
BstSLI	GKGCMC	1 cut(s)	301
BstUI	CGCG	1 cut(s)	141
BstV1I	GCAGC	5 cut(s)	277, 357, 425, 483, 534
BstZI	CGGCCG	1 cut(s)	128
BsuI	GTATCC	1 cut(s)	282
BsuRI	GGCC	3 cut(s)	130, 425, 442
BtgI	CCRYGG	2 cut(s)	387, 396
BtrI	CACGTC	2 cut(s)	307, 649
BtsCI	GGATG	2 cut(s)	550, 649
BtsI	GCAGTG	1 cut(s)	481
BtsIMutI	CAGTG	1 cut(s)	481
Cac8I	GCNNGC	9 cut(s)	70, 87, 128, 141, 336, 340, 381, 444, 628
CaiI	CAGNNNCTG	1 cut(s)	419
CfoI	GCGC	2 cut(s)	141, 143
Cfr10I	RCCGGY	3 cut(s)	85, 126, 379
CseI	GACGC	3 cut(s)	61, 74, 108
CviAII	CATG	6 cut(s)	7, 302, 363, 388, 397, 586
DdeI	CTNAG	5 cut(s)	18, 45, 282, 420, 622
DrdI	GACNNNNNNGTC	2 cut(s)	71, 107
DseDI	GACNNNNNNGTC	2 cut(s)	71, 107
EaeI	YGGCCR	1 cut(s)	128
EagI	CGGCCG	1 cut(s)	128
EclXI	CGGCCG	1 cut(s)	128
Eco130I	CCWWGG	3 cut(s)	387, 396, 569
Eco147I	AGGCCT	1 cut(s)	442
Eco52I	CGGCCG	1 cut(s)	128
Eco57I	CTGAAG	1 cut(s)	678
EcoT14I	CCWWGG	3 cut(s)	387, 396, 569
ErhI	CCWWGG	3 cut(s)	387, 396, 569
Esp3I	CGTCTC	1 cut(s)	158
FaeI	CATG	6 cut(s)	10, 305, 366, 391, 400, 589
FalI	AAGNNNNNCTT	2 cut(s)	585, 617
FatI	CATG	6 cut(s)	6, 301, 362, 387, 396, 585
FokI	GGATG	2 cut(s)	557, 656
GlaI	GCGC	2 cut(s)	140, 142
GsaI	CCCAGC	1 cut(s)	147
HaeIII	GGCC	3 cut(s)	130, 425, 442
HapII	CCGG	4 cut(s)	86, 127, 176, 380
HgaI	GACGC	3 cut(s)	61, 74, 108
HhaI	GCGC	2 cut(s)	141, 143
Hin1I	GRCGYC	2 cut(s)	66, 119
Hin1II	CATG	6 cut(s)	10, 305, 366, 391, 400, 589
Hin6I	GCGC	2 cut(s)	139, 141
HinP1I	GCGC	2 cut(s)	139, 141
HindIII	AAGCTT	1 cut(s)	332
HinfI	GANTC	3 cut(s)	29, 47, 356
HpaII	CCGG	4 cut(s)	86, 127, 176, 380
HphI	GGTGA	1 cut(s)	67
Hpy166II	GTNNAC	1 cut(s)	181
Hpy188I	TCNGA	6 cut(s)	28, 64, 100, 276, 326, 692
Hpy8I	GTNNAC	1 cut(s)	181
Hpy99I	CGWCG	4 cut(s)	68, 104, 124, 280
HpyAV	CCTTC	4 cut(s)	192, 402, 425, 478
HpyCH4IV	ACGT	4 cut(s)	108, 269, 306, 648
HpyCH4V	TGCA	1 cut(s)	342
HpyF3I	CTNAG	5 cut(s)	18, 45, 282, 420, 622
HpySE526I	ACGT	4 cut(s)	108, 269, 306, 648
Hsp92I	GRCGYC	2 cut(s)	66, 119
Hsp92II	CATG	6 cut(s)	10, 305, 366, 391, 400, 589
HspAI	GCGC	2 cut(s)	139, 141
KroI	GCCGGC	3 cut(s)	85, 126, 379
KroNI	GCCGGC	3 cut(s)	87, 128, 381
Lsp1109I	GCAGC	5 cut(s)	277, 357, 425, 483, 534
LweI	GCATC	2 cut(s)	98, 655
MaeII	ACGT	4 cut(s)	108, 269, 306, 648
MaeIII	GTNAC	1 cut(s)	73
MbiI	CCGCTC	1 cut(s)	17
MboII	GAAGA	3 cut(s)	84, 145, 593
MhlI	GDGCHC	1 cut(s)	301
MluCI	AATT	3 cut(s)	493, 637, 671
MlyI	GAGTC	3 cut(s)	23, 56, 350
MmeI	TCCRAC	3 cut(s)	87, 123, 299
MroNI	GCCGGC	3 cut(s)	85, 126, 379
MseI	TTAA	1 cut(s)	497
MslI	CAYNNNNRTG	1 cut(s)	616
MspA1I	CMGCKG	3 cut(s)	419, 468, 626
MspI	CCGG	4 cut(s)	86, 127, 176, 380
MspR9I	CCNGG	1 cut(s)	176
MvnI	CGCG	1 cut(s)	141
NaeI	GCCGGC	3 cut(s)	87, 128, 381
NciI	CCSGG	1 cut(s)	176
NcoI	CCATGG	2 cut(s)	387, 396
NgoMIV	GCCGGC	3 cut(s)	85, 126, 379
NlaIII	CATG	6 cut(s)	10, 305, 366, 391, 400, 589
NlaIV	GGNNCC	1 cut(s)	173
NmuCI	GTSAC	1 cut(s)	73
NspI	RCATGY	1 cut(s)	10
NspV	TTCGAA	1 cut(s)	406
PauI	GCGCGC	1 cut(s)	139
PceI	AGGCCT	1 cut(s)	442
PciI	ACATGT	1 cut(s)	6
PcsI	WCGNNNNNNNCGW	1 cut(s)	128
PdiI	GCCGGC	3 cut(s)	87, 128, 381
PflMI	CCANNNNNTGG	2 cut(s)	307, 675
PleI	GAGTC	3 cut(s)	23, 55, 350
PpsI	GAGTC	3 cut(s)	23, 55, 350
PscI	ACATGT	1 cut(s)	6
PspFI	CCCAGC	1 cut(s)	143
PspN4I	GGNNCC	1 cut(s)	173
PstNI	CAGNNNCTG	1 cut(s)	419
PteI	GCGCGC	1 cut(s)	139
PvuII	CAGCTG	1 cut(s)	626
RseI	CAYNNNNRTG	1 cut(s)	616
SaqAI	TTAA	1 cut(s)	497
SchI	GAGTC	3 cut(s)	23, 56, 350
ScrFI	CCNGG	1 cut(s)	176
SduI	GDGCHC	1 cut(s)	301
SfaNI	GCATC	2 cut(s)	98, 655
SfuI	TTCGAA	1 cut(s)	406
SmiMI	CAYNNNNRTG	1 cut(s)	616
SmlI	CTYRAG	1 cut(s)	591
SmoI	CTYRAG	1 cut(s)	591
Sse9I	AATT	3 cut(s)	493, 637, 671
SseBI	AGGCCT	1 cut(s)	442
SsiI	CCGC	8 cut(s)	15, 311, 360, 367, 417, 426, 446, 468
StuI	AGGCCT	1 cut(s)	442
StyD4I	CCNGG	1 cut(s)	174
StyI	CCWWGG	3 cut(s)	387, 396, 569
TaiI	ACGT	4 cut(s)	111, 272, 309, 651
TaqI	TCGA	3 cut(s)	50, 122, 406
TasI	AATT	3 cut(s)	493, 637, 671
TauI	GCSGC	5 cut(s)	314, 370, 419, 428, 471
Tru1I	TTAA	1 cut(s)	497
Tru9I	TTAA	1 cut(s)	497
TscAI	CASTG	1 cut(s)	481
TseFI	GTSAC	1 cut(s)	73
TseI	GCWGC	5 cut(s)	290, 370, 413, 471, 522
Tsp45I	GTSAC	1 cut(s)	73
TspDTI	ATGAA	1 cut(s)	506
TspRI	CASTG	1 cut(s)	481
Van91I	CCANNNNNTGG	2 cut(s)	307, 675
XapI	RAATTY	1 cut(s)	493
XceI	RCATGY	1 cut(s)	10
XcmI	CCANNNNNNNNNTGG	1 cut(s)	394

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.