Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0000958

Physical Location & Seq

Genomic Coordinates Forward (+)

9200318 .. 9201271

Gene Structure 954 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1067800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGTGGGCAACATTTCTCCACGTGGCGTCCTCCTCACTCTCCGTGTGCAACTCGCATGGACCCGGGGCCCACTCAAGACCCTCCCAATCCAAAGCTATAAAAGCCACCTCACTCTCTCCCCAGTTGTCAGCCTGCAACCCCAAAACTTGTGCTAAAACACACTCTCAACTCACAGCTTTCTCCGACGCAGCAGAACAAATGAACACGATCTCCAGACAACTCTCCGATTCCGCCGAAAGGCCCGAATCGAGTTCCGAAAGCGTCACGACTCGAAGCCAGCCGACTTCGTTCTCCGATGAGGAGGTCATTTTGGCGTCCAGCACGCCGAAGAAGCGAGCGGGGAGGAGAGTTTTCAACGAGACAAGGCACCCCGTTTACAGAGGAGTGAGGAGGAGGAACAACGACAAGTGGGTGTGCGAAATGAGAGAACCAAACAAGAAGAAGTCGAGGATATGGCTCGGAACTTATCCAACGGCAGAGATGGCAGCTCGGGCGCATGACGTGGCGGCATTGGCCTTTAGAGGGAGGCTTGCCTGCCTCAATTTTGCAGACTCCGCATGGCGCCTGCCTGTCCCGGCTTCCACTGATTCAGTGGATATCAGGCGGGCGGCCGCGGAGGCTGCAGAGACATTCAGGCCAGCCGAGTTTGGCGGAGTGTCGGAAAGTGGGGATGATGAGAAGGAGAGCAAGAAAATGGAGGGGGAGAAGGATTGTGGATGTGCGGAGCAAAGCGATTGTGGAGGTGCGGAGCAAAGCGATTGTGGAGGTGCGGAGCAAAGTGGCAGCTCGTTTTACTTGGATGAGGAGGAAATGTTCGCCATGCCAAGGTTGCTTGATAGTATGGCGGAAGGGCTTCTGCTCTCTCCACCTCGCCGTTCAGCTGGTAGCAACATGAACTGGGATGATATGGGAAGCAATGATGATGACGTCAATCTGTGGAGCTTCTCAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0001558 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009889 GO:0009987 GO:0010035 GO:0010371 GO:0010468 GO:0010556 GO:0010565 GO:0010817 GO:0016143 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0019748 GO:0019757 GO:0019760 GO:0022603 GO:0022604 GO:0031323 GO:0031326 GO:0032350 GO:0040008 GO:0040034 GO:0042221 GO:0043436 GO:0043455 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0046885 GO:0046890 GO:0048506 GO:0048509 GO:0048510 GO:0048638 GO:0050789 GO:0050793 GO:0050794 GO:0050826 GO:0050896 GO:0051128 GO:0051171 GO:0051252 GO:0051510 GO:0060255 GO:0062012 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

318

Amino Acids

34.58

Weight (kDa)

5.65

Isoelectric Point (pI)

65.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	124 - 175	5e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000958)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12610 AT1G63030 AT1G63030
fragaria_vesca	FvH4_5g01440
malus_domestica	MD04G1067800.v1.1 MD04G1067900.v1.1 MD06G1072300.v1.1
prunus_persica	Prupe.5G089900_v2.0.a1 Prupe.5G090000_v2.0.a1 Prupe.5G090100_v2.0.a1 Prupe.5G090200_v2.0.a1 Prupe.5G090500_v2.0.a1
pyrus_communis	pycom04g06140 pycom06g07110 pycom06g07120
rosa_chinensis	RchiOBHm_Chr7g0199251 RchiOBHm_Chr7g0199301 RchiOBHm_Chr7g0199331 RchiOBHm_Chr7g0199351 RchiOBHm_Chr7g0199381
rosa_laevigata	RLG00000002739 RLG00000002740 RLG00000003796 RLG00000003799 RLG00000003801
rosa_multiflora	Rmu_co8046292.1_g000001 Rmu_co8280319.1_g000001 Rmu_sc0000855.1_g000009 Rmu_sc0000950.1_g000001 Rmu_sc0000950.1_g000005 Rmu_sc0007820.1_g000002 Rmu_sc0010720.1_g000001 Rmu_sc0039534.1_g000001
rosa_roxburghii	Rroxscaffold_3G00256750 Rroxscaffold_3G00256770 Rroxscaffold_3G00256870 Rroxscaffold_5G00359530
rosa_rugosa	Rorug07G0053500 Rorug07G0053500 Rorug07G0053500 Rorug07G0053800
rosa_samantha	Rh4BG264100 Rh7AG177700 Rh7AG177900 Rh7AG178000 Rh7AG178100 Rh7AG178600 Rh7BG181300 Rh7BG181400 Rh7BG181600 Rh7BG181900 Rh7BG182100 Rh7CG186800 Rh7CG187000 Rh7CG187200 Rh7CG187400 Rh7DG180800 Rh7DG181700
rosa_wichuraiana	Rw7G015620 Rw7G015630 Rw7G015650 Rw7G015670 Rw7G015680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	930
AccB1I	GGYRCC	2 cut(s)	366, 561
AccBSI	CCGCTC	1 cut(s)	338
AccII	CGCG	1 cut(s)	614
AcoI	YGGCCR	1 cut(s)	609
AcvI	CACGTG	1 cut(s)	22
AcyI	GRCGYC	4 cut(s)	26, 314, 562, 927
AfiI	CCNNNNNNNGG	3 cut(s)	237, 522, 825
AgsI	TTSAA	1 cut(s)	355
AjiI	CACGTC	1 cut(s)	502
AloI	GAACNNNNNNTCC	4 cut(s)	194, 226, 797, 829
AluBI	AGCT	6 cut(s)	95, 176, 488, 786, 881, 942
AluI	AGCT	6 cut(s)	95, 176, 488, 786, 881, 942
Alw26I	GTCTC	2 cut(s)	353, 620
Ama87I	CYCGRG	2 cut(s)	62, 489
AoxI	GGCC	5 cut(s)	66, 239, 513, 609, 635
ApaI	GGGCCC	1 cut(s)	70
ApeKI	GCWGC	4 cut(s)	188, 485, 620, 783
Asp700I	GAANNNNTTC	1 cut(s)	852
AspLEI	GCGC	2 cut(s)	496, 564
AspS9I	GGNCC	4 cut(s)	59, 66, 67, 240
AsuC2I	CCSGG	3 cut(s)	63, 64, 575
AvaI	CYCGRG	2 cut(s)	62, 489
AvaII	GGWCC	1 cut(s)	59
BaeGI	GKGCMC	1 cut(s)	70
BanI	GGYRCC	2 cut(s)	366, 561
BanII	GRGCYC	1 cut(s)	70
BbrPI	CACGTG	1 cut(s)	22
BbvI	GCAGC	4 cut(s)	200, 497, 607, 795
BccI	CCATC	1 cut(s)	475
BceAI	ACGGC	2 cut(s)	489, 858
BcnI	CCSGG	3 cut(s)	63, 64, 575
BcoDI	GTCTC	2 cut(s)	353, 620
BfmI	CTRYAG	1 cut(s)	621
BfoI	RGCGCY	1 cut(s)	565
BglI	GCCNNNNNGGC	1 cut(s)	617
BisI	GCNGC	7 cut(s)	189, 486, 507, 609, 612, 621, 784
BlsI	GCNGC	7 cut(s)	190, 487, 508, 610, 613, 622, 785
Bme1390I	CCNGG	3 cut(s)	63, 64, 575
Bme18I	GGWCC	1 cut(s)	59
BmeT110I	CYCGRG	2 cut(s)	62, 489
BmgBI	CACGTC	1 cut(s)	502
BmgT120I	GGNCC	4 cut(s)	59, 66, 67, 240
BmiI	GGNNCC	5 cut(s)	61, 67, 68, 368, 563
BmrFI	CCNGG	3 cut(s)	63, 64, 575
BmrI	ACTGGG	2 cut(s)	115, 907
BmuI	ACTGGG	2 cut(s)	115, 907
BpmI	CTGGAG	1 cut(s)	196
BpuEI	CTTGAG	1 cut(s)	58
BpuMI	CCSGG	3 cut(s)	63, 64, 575
BsaAI	YACGTR	1 cut(s)	22
BsaHI	GRCGYC	4 cut(s)	26, 314, 562, 927
BsaJI	CCNNGG	4 cut(s)	62, 63, 612, 824
BsaXI	ACNNNNNCTCC	4 cut(s)	194, 224, 797, 827
Bsc4I	CCNNNNNNNGG	3 cut(s)	237, 522, 825
Bse1I	ACTGG	2 cut(s)	121, 902
Bse3DI	GCAATG	1 cut(s)	922
BseDI	CCNNGG	4 cut(s)	62, 63, 612, 824
BseGI	GGATG	4 cut(s)	676, 722, 805, 907
BseLI	CCNNNNNNNGG	3 cut(s)	237, 522, 825
BseMI	GCAATG	1 cut(s)	922
BseNI	ACTGG	2 cut(s)	121, 902
BseRI	GAGGAG	7 cut(s)	22, 314, 358, 396, 403, 406, 818
BseSI	GKGCMC	1 cut(s)	70
BseX3I	CGGCCG	1 cut(s)	609
BseXI	GCAGC	4 cut(s)	200, 497, 607, 795
Bsh1236I	CGCG	1 cut(s)	614
Bsh1285I	CGRYCG	1 cut(s)	612
BshFI	GGCC	5 cut(s)	68, 241, 515, 611, 637
BshNI	GGYRCC	2 cut(s)	366, 561
BsiEI	CGRYCG	1 cut(s)	612
BsiHKCI	CYCGRG	2 cut(s)	62, 489
BsiSI	CCGG	2 cut(s)	63, 575
BslFI	GGGAC	1 cut(s)	557
BslI	CCNNNNNNNGG	3 cut(s)	237, 522, 825
BsmAI	GTCTC	2 cut(s)	353, 620
BsmFI	GGGAC	1 cut(s)	557
BsnI	GGCC	5 cut(s)	68, 241, 515, 611, 637
BsoBI	CYCGRG	2 cut(s)	62, 489
Bsp120I	GGGCCC	1 cut(s)	66
Bsp1286I	GDGCHC	1 cut(s)	70
Bsp143I	GATC	1 cut(s)	207
BspANI	GGCC	5 cut(s)	68, 241, 515, 611, 637
BspFNI	CGCG	1 cut(s)	614
BspLI	GGNNCC	5 cut(s)	61, 67, 68, 368, 563
BspMAI	CTGCAG	1 cut(s)	625
BspT107I	GGYRCC	2 cut(s)	366, 561
BsrBI	CCGCTC	1 cut(s)	338
BsrDI	GCAATG	1 cut(s)	922
BsrI	ACTGG	2 cut(s)	121, 902
BssECI	CCNNGG	4 cut(s)	62, 63, 612, 824
BssMI	GATC	1 cut(s)	207
BssNI	GRCGYC	4 cut(s)	26, 314, 562, 927
BssT1I	CCWWGG	1 cut(s)	824
BstACI	GRCGYC	4 cut(s)	26, 314, 562, 927
BstBAI	YACGTR	1 cut(s)	22
BstC8I	GCNNGC	9 cut(s)	133, 278, 323, 336, 531, 535, 566, 606, 639
BstDSI	CCRYGG	1 cut(s)	612
BstF5I	GGATG	4 cut(s)	676, 722, 805, 907
BstFNI	CGCG	1 cut(s)	614
BstH2I	RGCGCY	1 cut(s)	565
BstHHI	GCGC	2 cut(s)	496, 564
BstKTI	GATC	1 cut(s)	210
BstMAI	GTCTC	2 cut(s)	353, 620
BstMBI	GATC	1 cut(s)	207
BstMCI	CGRYCG	1 cut(s)	612
BstMWI	GCNNNNNNNGC	9 cut(s)	101, 331, 482, 491, 512, 554, 617, 620, 829
BstSCI	CCNGG	3 cut(s)	61, 62, 573
BstSFI	CTRYAG	1 cut(s)	621
BstSLI	GKGCMC	1 cut(s)	70
BstUI	CGCG	1 cut(s)	614
BstV1I	GCAGC	4 cut(s)	200, 497, 607, 795
BstZI	CGGCCG	1 cut(s)	609
BsuRI	GGCC	5 cut(s)	68, 241, 515, 611, 637
BtgI	CCRYGG	1 cut(s)	612
BtrI	CACGTC	1 cut(s)	502
BtsCI	GGATG	4 cut(s)	676, 722, 805, 907
BtsIMutI	CAGTG	2 cut(s)	582, 597
Cac8I	GCNNGC	9 cut(s)	133, 278, 323, 336, 531, 535, 566, 606, 639
CciNI	GCGGCCGC	1 cut(s)	609
CfoI	GCGC	2 cut(s)	496, 564
Cfr13I	GGNCC	4 cut(s)	59, 66, 67, 240
Cfr42I	CCGCGG	1 cut(s)	615
Cfr9I	CCCGGG	1 cut(s)	62
CseI	GACGC	4 cut(s)	15, 194, 250, 303
CviAII	CATG	5 cut(s)	56, 497, 558, 820, 892
DinI	GGCGCC	1 cut(s)	563
DpnI	GATC	1 cut(s)	209
DpnII	GATC	1 cut(s)	207
EaeI	YGGCCR	1 cut(s)	609
EagI	CGGCCG	1 cut(s)	609
EciI	GGCGGA	3 cut(s)	220, 666, 860
EclXI	CGGCCG	1 cut(s)	609
Eco130I	CCWWGG	1 cut(s)	824
Eco24I	GRGCYC	1 cut(s)	70
Eco32I	GATATC	1 cut(s)	598
Eco47I	GGWCC	1 cut(s)	59
Eco52I	CGGCCG	1 cut(s)	609
Eco72I	CACGTG	1 cut(s)	22
Eco88I	CYCGRG	2 cut(s)	62, 489
EcoO109I	RGGNCCY	1 cut(s)	66
EcoRV	GATATC	1 cut(s)	598
EcoT14I	CCWWGG	1 cut(s)	824
EcoT38I	GRGCYC	1 cut(s)	70
EgeI	GGCGCC	1 cut(s)	563
EheI	GGCGCC	1 cut(s)	563
ErhI	CCWWGG	1 cut(s)	824
FaeI	CATG	5 cut(s)	59, 500, 561, 823, 895
FaiI	YATR	9 cut(s)	57, 98, 454, 498, 559, 821, 842, 893, 908
FaqI	GGGAC	1 cut(s)	557
FatI	CATG	5 cut(s)	55, 496, 557, 819, 891
FauI	CCCGC	2 cut(s)	331, 597
Fnu4HI	GCNGC	7 cut(s)	189, 486, 507, 609, 612, 621, 784
FokI	GGATG	4 cut(s)	683, 729, 812, 914
FriOI	GRGCYC	1 cut(s)	70
Fsp4HI	GCNGC	7 cut(s)	189, 486, 507, 609, 612, 621, 784
GlaI	GCGC	2 cut(s)	495, 563
GluI	GCNGC	7 cut(s)	189, 486, 507, 609, 612, 621, 784
GsuI	CTGGAG	1 cut(s)	196
HaeII	RGCGCY	1 cut(s)	565
HaeIII	GGCC	5 cut(s)	68, 241, 515, 611, 637
HapII	CCGG	2 cut(s)	63, 575
HgaI	GACGC	4 cut(s)	15, 194, 250, 303
HhaI	GCGC	2 cut(s)	496, 564
Hin1I	GRCGYC	4 cut(s)	26, 314, 562, 927
Hin1II	CATG	5 cut(s)	59, 500, 561, 823, 895
Hin6I	GCGC	2 cut(s)	494, 562
HinP1I	GCGC	2 cut(s)	494, 562
HinfI	GANTC	5 cut(s)	227, 245, 268, 551, 587
HpaII	CCGG	2 cut(s)	63, 575
Hpy166II	GTNNAC	1 cut(s)	376
Hpy188I	TCNGA	6 cut(s)	184, 226, 256, 295, 461, 661
Hpy188III	TCNNGA	3 cut(s)	75, 213, 265
Hpy8I	GTNNAC	1 cut(s)	376
Hpy99I	CGWCG	1 cut(s)	188
HpyAV	CCTTC	3 cut(s)	673, 700, 842
HpyCH4IV	ACGT	3 cut(s)	21, 501, 927
HpyCH4V	TGCA	4 cut(s)	48, 135, 548, 623
HpyF10VI	GCNNNNNNNGC	9 cut(s)	101, 331, 482, 491, 512, 554, 617, 620, 829
HpySE526I	ACGT	3 cut(s)	21, 501, 927
Hsp92I	GRCGYC	4 cut(s)	26, 314, 562, 927
Hsp92II	CATG	5 cut(s)	59, 500, 561, 823, 895
HspAI	GCGC	2 cut(s)	494, 562
KasI	GGCGCC	1 cut(s)	561
KspI	CCGCGG	1 cut(s)	615
Kzo9I	GATC	1 cut(s)	207
LmnI	GCTCC	4 cut(s)	724, 748, 772, 939
Lsp1109I	GCAGC	4 cut(s)	200, 497, 607, 795
MaeII	ACGT	3 cut(s)	21, 501, 927
MaeIII	GTNAC	1 cut(s)	262
MalI	GATC	1 cut(s)	209
MbiI	CCGCTC	1 cut(s)	338
MboI	GATC	1 cut(s)	207
MboII	GAAGA	2 cut(s)	340, 451
MhlI	GDGCHC	1 cut(s)	70
MluCI	AATT	1 cut(s)	541
Mly113I	GGCGCC	1 cut(s)	562
MlyI	GAGTC	2 cut(s)	262, 545
MmeI	TCCRAC	3 cut(s)	207, 494, 639
MroXI	GAANNNNTTC	1 cut(s)	852
MspA1I	CMGCKG	2 cut(s)	614, 881
MspI	CCGG	2 cut(s)	63, 575
MspR9I	CCNGG	3 cut(s)	63, 64, 575
MvnI	CGCG	1 cut(s)	614
MwoI	GCNNNNNNNGC	9 cut(s)	101, 331, 482, 491, 512, 554, 617, 620, 829
NarI	GGCGCC	1 cut(s)	562
NciI	CCSGG	3 cut(s)	63, 64, 575
NdeII	GATC	1 cut(s)	207
NlaIII	CATG	5 cut(s)	59, 500, 561, 823, 895
NlaIV	GGNNCC	5 cut(s)	61, 67, 68, 368, 563
NmeAIII	GCCGAG	1 cut(s)	667
NmuCI	GTSAC	1 cut(s)	262
NotI	GCGGCCGC	1 cut(s)	609
PdmI	GAANNNNTTC	1 cut(s)	852
PfeI	GAWTC	3 cut(s)	227, 245, 587
PkrI	GCNGC	7 cut(s)	190, 487, 508, 610, 613, 622, 785
PleI	GAGTC	2 cut(s)	262, 545
PluTI	GGCGCC	1 cut(s)	565
PmaCI	CACGTG	1 cut(s)	22
PmlI	CACGTG	1 cut(s)	22
PpsI	GAGTC	2 cut(s)	262, 545
Ppu21I	YACGTR	1 cut(s)	22
PspCI	CACGTG	1 cut(s)	22
PspN4I	GGNNCC	5 cut(s)	61, 67, 68, 368, 563
PspOMI	GGGCCC	1 cut(s)	66
PspPI	GGNCC	4 cut(s)	59, 66, 67, 240
PstI	CTGCAG	1 cut(s)	625
PvuII	CAGCTG	1 cut(s)	881
SacII	CCGCGG	1 cut(s)	615
SatI	GCNGC	7 cut(s)	189, 486, 507, 609, 612, 621, 784
Sau3AI	GATC	1 cut(s)	207
Sau96I	GGNCC	4 cut(s)	59, 66, 67, 240
SchI	GAGTC	2 cut(s)	262, 545
ScrFI	CCNGG	3 cut(s)	63, 64, 575
SduI	GDGCHC	1 cut(s)	70
SfcI	CTRYAG	1 cut(s)	621
SfoI	GGCGCC	1 cut(s)	563
Sfr303I	CCGCGG	1 cut(s)	615
SgrBI	CCGCGG	1 cut(s)	615
SinI	GGWCC	1 cut(s)	59
SmaI	CCCGGG	1 cut(s)	64
SmlI	CTYRAG	1 cut(s)	73
SmoI	CTYRAG	1 cut(s)	73
Sse9I	AATT	1 cut(s)	541
SspDI	GGCGCC	1 cut(s)	561
StyD4I	CCNGG	3 cut(s)	61, 62, 573
StyI	CCWWGG	1 cut(s)	824
TaiI	ACGT	3 cut(s)	24, 504, 930
TaqI	TCGA	3 cut(s)	248, 271, 446
TasI	AATT	1 cut(s)	541
TauI	GCSGC	3 cut(s)	509, 611, 614
TfiI	GAWTC	3 cut(s)	227, 245, 587
TscAI	CASTG	2 cut(s)	589, 597
TseFI	GTSAC	1 cut(s)	262
TseI	GCWGC	4 cut(s)	188, 485, 620, 783
Tsp45I	GTSAC	1 cut(s)	262
TspDTI	ATGAA	2 cut(s)	215, 908
TspGWI	ACGGA	1 cut(s)	31
TspMI	CCCGGG	1 cut(s)	62
TspRI	CASTG	2 cut(s)	589, 597
VpaK11BI	GGWCC	1 cut(s)	59
XcmI	CCANNNNNNNNNTGG	1 cut(s)	589
XmaI	CCCGGG	1 cut(s)	62
XmnI	GAANNNNTTC	1 cut(s)	852
ZraI	GACGTC	1 cut(s)	928

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.