Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0000958

Physical Location & Seq

Genomic Coordinates Forward (+)

9216198 .. 9216680

Gene Structure 483 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1067900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGAGAGAACCAAACAAGAAGAAGTCGAGGATATGGCTCGGAACTTATCCAACTGCAGAGATGGCAGCTCGGGTGCATGACGTGGCAGCATTGGCCTTTAGAGGGAGGCTTGCCTGCCTCAATTTTGCAGACTTCGCATGGCGCCTGCCTGTTCCGGCTTCCATTGATTCAGTGGATGTCAGGCGGGCGGCCGAGGAGGCTGCAGAGACATTCAGGCCAGCTGAGTTTGGCGGAGTGTCGGAAAGTGGGGATGATGAGAAGGAGAGCAAGAAAATGGAGGGGGAGAAGGATTGTGGAGGTGCGGAGCAAAGTGGCAGCTCGTTTTACTTGGATGAGGAGGAAATGTTCGCCATGCCAAAGTTGCTTGATAGTATGGCCGAAGGGCTTCTGCTCTCTACACGTCGCCGTCCAGGTGGCAACATGAATTGGGATGATATGGGAAGCAATGATGACGTCAATCTGTGGAGCTTCTCAAAGCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0001558 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009889 GO:0009987 GO:0010035 GO:0010371 GO:0010468 GO:0010556 GO:0010565 GO:0010817 GO:0016143 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0019748 GO:0019757 GO:0019760 GO:0022603 GO:0022604 GO:0031323 GO:0031326 GO:0032350 GO:0040008 GO:0040034 GO:0042221 GO:0043436 GO:0043455 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0046885 GO:0046890 GO:0048506 GO:0048509 GO:0048510 GO:0048638 GO:0050789 GO:0050793 GO:0050794 GO:0050826 GO:0050896 GO:0051128 GO:0051171 GO:0051252 GO:0051510 GO:0060255 GO:0062012 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

161

Amino Acids

17.79

Weight (kDa)

4.79

Isoelectric Point (pI)

63.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	6 - 35	4.4e-06	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000958)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12610 AT1G63030 AT1G63030
fragaria_vesca	FvH4_5g01440
malus_domestica	MD04G1067800.v1.1 MD04G1067900.v1.1 MD06G1072300.v1.1
prunus_persica	Prupe.5G089900_v2.0.a1 Prupe.5G090000_v2.0.a1 Prupe.5G090100_v2.0.a1 Prupe.5G090200_v2.0.a1 Prupe.5G090500_v2.0.a1
pyrus_communis	pycom04g06140 pycom06g07110 pycom06g07120
rosa_chinensis	RchiOBHm_Chr7g0199251 RchiOBHm_Chr7g0199301 RchiOBHm_Chr7g0199331 RchiOBHm_Chr7g0199351 RchiOBHm_Chr7g0199381
rosa_laevigata	RLG00000002739 RLG00000002740 RLG00000003796 RLG00000003799 RLG00000003801
rosa_multiflora	Rmu_co8046292.1_g000001 Rmu_co8280319.1_g000001 Rmu_sc0000855.1_g000009 Rmu_sc0000950.1_g000001 Rmu_sc0000950.1_g000005 Rmu_sc0007820.1_g000002 Rmu_sc0010720.1_g000001 Rmu_sc0039534.1_g000001
rosa_roxburghii	Rroxscaffold_3G00256750 Rroxscaffold_3G00256770 Rroxscaffold_3G00256870 Rroxscaffold_5G00359530
rosa_rugosa	Rorug07G0053500 Rorug07G0053500 Rorug07G0053500 Rorug07G0053800
rosa_samantha	Rh4BG264100 Rh7AG177700 Rh7AG177900 Rh7AG178000 Rh7AG178100 Rh7AG178600 Rh7BG181300 Rh7BG181400 Rh7BG181600 Rh7BG181900 Rh7BG182100 Rh7CG186800 Rh7CG187000 Rh7CG187200 Rh7CG187400 Rh7DG180800 Rh7DG181700
rosa_wichuraiana	Rw7G015620 Rw7G015630 Rw7G015650 Rw7G015670 Rw7G015680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	456
AccB1I	GGYRCC	1 cut(s)	141
AciI	CCGC	4 cut(s)	184, 188, 231, 302
AcoI	YGGCCR	2 cut(s)	189, 375
AcyI	GRCGYC	2 cut(s)	142, 453
AfiI	CCNNNNNNNGG	1 cut(s)	102
AflIII	ACRYGT	1 cut(s)	398
AjiI	CACGTC	2 cut(s)	82, 401
AjnI	CCWGG	1 cut(s)	409
AloI	GAACNNNNNNTCC	2 cut(s)	329, 361
AluBI	AGCT	4 cut(s)	68, 221, 318, 468
AluI	AGCT	4 cut(s)	68, 221, 318, 468
Alw26I	GTCTC	1 cut(s)	200
Ama87I	CYCGRG	1 cut(s)	69
AoxI	GGCC	4 cut(s)	93, 189, 215, 375
ApeKI	GCWGC	4 cut(s)	65, 86, 200, 315
Asp700I	GAANNNNTTC	1 cut(s)	384
AspLEI	GCGC	1 cut(s)	144
AvaI	CYCGRG	1 cut(s)	69
BanI	GGYRCC	1 cut(s)	141
BbvI	GCAGC	4 cut(s)	77, 98, 187, 327
BccI	CCATC	1 cut(s)	55
BceAI	ACGGC	1 cut(s)	390
BcgI	CGANNNNNNTGC	2 cut(s)	182, 216
BciT130I	CCWGG	1 cut(s)	411
BcoDI	GTCTC	1 cut(s)	200
BfmI	CTRYAG	2 cut(s)	54, 201
BfoI	RGCGCY	1 cut(s)	145
BglI	GCCNNNNNGGC	1 cut(s)	197
BisI	GCNGC	5 cut(s)	66, 87, 189, 201, 316
BlsI	GCNGC	5 cut(s)	67, 88, 190, 202, 317
Bme1390I	CCNGG	1 cut(s)	411
BmeT110I	CYCGRG	1 cut(s)	69
BmgBI	CACGTC	2 cut(s)	82, 401
BmiI	GGNNCC	1 cut(s)	143
BmrFI	CCNGG	1 cut(s)	411
BsaHI	GRCGYC	2 cut(s)	142, 453
BsaJI	CCNNGG	1 cut(s)	192
BsaXI	ACNNNNNCTCC	2 cut(s)	329, 359
Bsc4I	CCNNNNNNNGG	1 cut(s)	102
Bse3DI	GCAATG	1 cut(s)	451
BseBI	CCWGG	1 cut(s)	411
BseDI	CCNNGG	1 cut(s)	192
BseGI	GGATG	4 cut(s)	181, 256, 337, 436
BseLI	CCNNNNNNNGG	1 cut(s)	102
BseMI	GCAATG	1 cut(s)	451
BseMII	CTCAG	1 cut(s)	213
BseRI	GAGGAG	2 cut(s)	209, 350
BseX3I	CGGCCG	1 cut(s)	189
BseXI	GCAGC	4 cut(s)	77, 98, 187, 327
Bsh1285I	CGRYCG	1 cut(s)	192
BshFI	GGCC	4 cut(s)	95, 191, 217, 377
BshNI	GGYRCC	1 cut(s)	141
BsiEI	CGRYCG	1 cut(s)	192
BsiHKCI	CYCGRG	1 cut(s)	69
BsiSI	CCGG	1 cut(s)	155
BslI	CCNNNNNNNGG	1 cut(s)	102
BsmAI	GTCTC	1 cut(s)	200
BsnI	GGCC	4 cut(s)	95, 191, 217, 377
BsoBI	CYCGRG	1 cut(s)	69
BspACI	CCGC	4 cut(s)	184, 188, 231, 302
BspANI	GGCC	4 cut(s)	95, 191, 217, 377
BspCNI	CTCAG	1 cut(s)	214
BspLI	GGNNCC	1 cut(s)	143
BspMAI	CTGCAG	2 cut(s)	58, 205
BspT107I	GGYRCC	1 cut(s)	141
BsrDI	GCAATG	1 cut(s)	451
BssECI	CCNNGG	1 cut(s)	192
BssNI	GRCGYC	2 cut(s)	142, 453
Bst2UI	CCWGG	1 cut(s)	411
BstACI	GRCGYC	2 cut(s)	142, 453
BstC8I	GCNNGC	5 cut(s)	111, 115, 146, 186, 219
BstDEI	CTNAG	1 cut(s)	222
BstF5I	GGATG	4 cut(s)	181, 256, 337, 436
BstH2I	RGCGCY	1 cut(s)	145
BstHHI	GCGC	1 cut(s)	144
BstMAI	GTCTC	1 cut(s)	200
BstMCI	CGRYCG	1 cut(s)	192
BstMWI	GCNNNNNNNGC	5 cut(s)	62, 92, 134, 197, 361
BstNI	CCWGG	1 cut(s)	411
BstSCI	CCNGG	1 cut(s)	409
BstSFI	CTRYAG	2 cut(s)	54, 201
BstV1I	GCAGC	4 cut(s)	77, 98, 187, 327
BstZI	CGGCCG	1 cut(s)	189
BsuRI	GGCC	4 cut(s)	95, 191, 217, 377
BtrI	CACGTC	2 cut(s)	82, 401
BtsCI	GGATG	4 cut(s)	181, 256, 337, 436
BtsIMutI	CAGTG	1 cut(s)	177
Cac8I	GCNNGC	5 cut(s)	111, 115, 146, 186, 219
CfoI	GCGC	1 cut(s)	144
CviAII	CATG	4 cut(s)	77, 138, 352, 421
DdeI	CTNAG	1 cut(s)	222
DinI	GGCGCC	1 cut(s)	143
EaeI	YGGCCR	2 cut(s)	189, 375
EagI	CGGCCG	1 cut(s)	189
EciI	GGCGGA	1 cut(s)	246
EclXI	CGGCCG	1 cut(s)	189
Eco52I	CGGCCG	1 cut(s)	189
Eco88I	CYCGRG	1 cut(s)	69
EcoRII	CCWGG	1 cut(s)	409
EgeI	GGCGCC	1 cut(s)	143
EheI	GGCGCC	1 cut(s)	143
FaeI	CATG	4 cut(s)	80, 141, 355, 424
FaiI	YATR	7 cut(s)	34, 78, 139, 353, 374, 422, 437
FatI	CATG	4 cut(s)	76, 137, 351, 420
FauI	CCCGC	1 cut(s)	177
Fnu4HI	GCNGC	5 cut(s)	66, 87, 189, 201, 316
FokI	GGATG	4 cut(s)	188, 263, 344, 443
Fsp4HI	GCNGC	5 cut(s)	66, 87, 189, 201, 316
GlaI	GCGC	1 cut(s)	143
GluI	GCNGC	5 cut(s)	66, 87, 189, 201, 316
HaeII	RGCGCY	1 cut(s)	145
HaeIII	GGCC	4 cut(s)	95, 191, 217, 377
HapII	CCGG	1 cut(s)	155
HhaI	GCGC	1 cut(s)	144
Hin1I	GRCGYC	2 cut(s)	142, 453
Hin1II	CATG	4 cut(s)	80, 141, 355, 424
Hin6I	GCGC	1 cut(s)	142
HinP1I	GCGC	1 cut(s)	142
HinfI	GANTC	1 cut(s)	167
HpaII	CCGG	1 cut(s)	155
Hpy188I	TCNGA	2 cut(s)	41, 241
Hpy99I	CGWCG	1 cut(s)	405
HpyAV	CCTTC	3 cut(s)	253, 280, 374
HpyCH4IV	ACGT	3 cut(s)	81, 400, 453
HpyCH4V	TGCA	4 cut(s)	56, 76, 128, 203
HpyF10VI	GCNNNNNNNGC	5 cut(s)	62, 92, 134, 197, 361
HpyF3I	CTNAG	1 cut(s)	222
HpySE526I	ACGT	3 cut(s)	81, 400, 453
Hsp92I	GRCGYC	2 cut(s)	142, 453
Hsp92II	CATG	4 cut(s)	80, 141, 355, 424
HspAI	GCGC	1 cut(s)	142
KasI	GGCGCC	1 cut(s)	141
LmnI	GCTCC	2 cut(s)	304, 465
LpnPI	CCDG	9 cut(s)	127, 158, 162, 166, 168, 199, 231, 396, 423
Lsp1109I	GCAGC	4 cut(s)	77, 98, 187, 327
MaeII	ACGT	3 cut(s)	81, 400, 453
MboII	GAAGA	1 cut(s)	31
MluCI	AATT	2 cut(s)	121, 424
Mly113I	GGCGCC	1 cut(s)	142
MmeI	TCCRAC	2 cut(s)	74, 219
MroXI	GAANNNNTTC	1 cut(s)	384
MspA1I	CMGCKG	1 cut(s)	221
MspI	CCGG	1 cut(s)	155
MspR9I	CCNGG	1 cut(s)	411
MvaI	CCWGG	1 cut(s)	411
MwoI	GCNNNNNNNGC	5 cut(s)	62, 92, 134, 197, 361
NarI	GGCGCC	1 cut(s)	142
NlaIII	CATG	4 cut(s)	80, 141, 355, 424
NlaIV	GGNNCC	1 cut(s)	143
NmeAIII	GCCGAG	1 cut(s)	217
PdmI	GAANNNNTTC	1 cut(s)	384
PfeI	GAWTC	1 cut(s)	167
PkrI	GCNGC	5 cut(s)	67, 88, 190, 202, 317
PluTI	GGCGCC	1 cut(s)	145
Psp6I	CCWGG	1 cut(s)	409
PspGI	CCWGG	1 cut(s)	409
PspN4I	GGNNCC	1 cut(s)	143
PstI	CTGCAG	2 cut(s)	58, 205
PvuII	CAGCTG	1 cut(s)	221
SatI	GCNGC	5 cut(s)	66, 87, 189, 201, 316
ScrFI	CCNGG	1 cut(s)	411
SetI	ASST	9 cut(s)	70, 84, 223, 301, 320, 403, 415, 456, 470
SfcI	CTRYAG	2 cut(s)	54, 201
SfoI	GGCGCC	1 cut(s)	143
Sse9I	AATT	2 cut(s)	121, 424
SsiI	CCGC	4 cut(s)	184, 188, 231, 302
SspDI	GGCGCC	1 cut(s)	141
StyD4I	CCNGG	1 cut(s)	409
TaiI	ACGT	3 cut(s)	84, 403, 456
TaqI	TCGA	1 cut(s)	26
TasI	AATT	2 cut(s)	121, 424
TauI	GCSGC	1 cut(s)	191
TfiI	GAWTC	1 cut(s)	167
TscAI	CASTG	1 cut(s)	177
TseI	GCWGC	4 cut(s)	65, 86, 200, 315
TspDTI	ATGAA	1 cut(s)	437
TspRI	CASTG	1 cut(s)	177
XcmI	CCANNNNNNNNNTGG	1 cut(s)	169
XmnI	GAANNNNTTC	1 cut(s)	384
ZraI	GACGTC	1 cut(s)	454

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.