Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0000958

Physical Location & Seq

Genomic Coordinates Forward (+)

14365031 .. 14365861

Gene Structure 831 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG181300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGAACTCCAATTACCAGCTCTCAGACTCCAACCAGCAAAGCCTCGAATCAGTCTCCTCCATCAACAAGCCCGAGTCTTCTTCCTCATCTGACACGAGCTTCACGACTCATTCCGACGAAGCGGTGATACTTGCTTCGAGCAGGCCGAAGAAGCGAGCCGGTAGGCGAGTGTTCAAGGAGACTCGCCACCCGGTCTACCGCGGCGTGAGGCGCAGGAACAATAACAAGTGGGTGTGCGAGGTCAGGGAGCCGAACAAAAAGACCAGAATTTGGCTCGGGACGTACCCAACTCTTGAGATGGCCGCTCGGGCACACGATGTGGCAGCGTTGGCCCTTAGGGGGAAGCAGGCATGCCTCAATTTCGCTGATTCCGTGTGGCTGTTGCCCATTCCGGCTTCTAAAGACCAGCTCGACATTCGCAGGGCCGCCGCCGAGGCTGCTGAGACATTTCGACCTGAGGAGTTCGGCGGCGTCTCGAGCAGCTGTGACGACAAGGAGAGGGAATATGAGGATGAGAATGTTGAGATGGACAACGAGAAGAAGAATGATGGCTTCTACGAGGATGAAGAGGCGCTCTTCGACATGCCCAGATTGCTGACTAGCATGGCGGAGTGTCCACTGCTCTCTCCGCCTCGTCATTACTTGGACAGTATAAACTGGGCAGACTATCAGGTGGAAAGCGAGTCAAATTTCAGCTTATGGAGCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0001558 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009889 GO:0009987 GO:0010035 GO:0010371 GO:0010468 GO:0010556 GO:0010565 GO:0010817 GO:0016143 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0019748 GO:0019757 GO:0019760 GO:0022603 GO:0022604 GO:0031323 GO:0031326 GO:0032350 GO:0040008 GO:0040034 GO:0042221 GO:0043436 GO:0043455 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0046885 GO:0046890 GO:0048506 GO:0048509 GO:0048510 GO:0048638 GO:0050789 GO:0050793 GO:0050794 GO:0050826 GO:0050896 GO:0051128 GO:0051171 GO:0051252 GO:0051510 GO:0060255 GO:0062012 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

236

Amino Acids

26.96

Weight (kDa)

5.2

Isoelectric Point (pI)

66.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	64 - 114	4.6e-16	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000958)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12610 AT1G63030 AT1G63030
fragaria_vesca	FvH4_5g01440
malus_domestica	MD04G1067800.v1.1 MD04G1067900.v1.1 MD06G1072300.v1.1
prunus_persica	Prupe.5G089900_v2.0.a1 Prupe.5G090000_v2.0.a1 Prupe.5G090100_v2.0.a1 Prupe.5G090200_v2.0.a1 Prupe.5G090500_v2.0.a1
pyrus_communis	pycom04g06140 pycom06g07110 pycom06g07120
rosa_chinensis	RchiOBHm_Chr7g0199251 RchiOBHm_Chr7g0199301 RchiOBHm_Chr7g0199331 RchiOBHm_Chr7g0199351 RchiOBHm_Chr7g0199381
rosa_laevigata	RLG00000002739 RLG00000002740 RLG00000003796 RLG00000003799 RLG00000003801
rosa_multiflora	Rmu_co8046292.1_g000001 Rmu_co8280319.1_g000001 Rmu_sc0000855.1_g000009 Rmu_sc0000950.1_g000001 Rmu_sc0000950.1_g000005 Rmu_sc0007820.1_g000002 Rmu_sc0010720.1_g000001 Rmu_sc0039534.1_g000001
rosa_roxburghii	Rroxscaffold_3G00256750 Rroxscaffold_3G00256770 Rroxscaffold_3G00256870 Rroxscaffold_5G00359530
rosa_rugosa	Rorug07G0053500 Rorug07G0053500 Rorug07G0053500 Rorug07G0053800
rosa_samantha	Rh4BG264100 Rh7AG177700 Rh7AG177900 Rh7AG178000 Rh7AG178100 Rh7AG178600 Rh7BG181300 Rh7BG181400 Rh7BG181600 Rh7BG181900 Rh7BG182100 Rh7CG186800 Rh7CG187000 Rh7CG187200 Rh7CG187400 Rh7DG180800 Rh7DG181700
rosa_wichuraiana	Rw7G015620 Rw7G015630 Rw7G015650 Rw7G015670 Rw7G015680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	270
AccBSI	CCGCTC	1 cut(s)	305
AccI	GTMKAC	1 cut(s)	195
AccII	CGCG	1 cut(s)	201
AciI	CCGC	9 cut(s)	122, 199, 201, 303, 426, 429, 468, 608, 629
AcoI	YGGCCR	1 cut(s)	300
AcsI	RAATTY	2 cut(s)	267, 688
AcyI	GRCGYC	1 cut(s)	471
AdeI	CACNNNGTG	1 cut(s)	319
AfaI	GTAC	1 cut(s)	284
AfiI	CCNNNNNNNGG	2 cut(s)	270, 339
AgsI	TTSAA	1 cut(s)	175
AluBI	AGCT	6 cut(s)	19, 99, 409, 483, 696, 705
AluI	AGCT	6 cut(s)	19, 99, 409, 483, 696, 705
Alw26I	GTCTC	4 cut(s)	58, 173, 437, 478
Ama87I	CYCGRG	4 cut(s)	71, 275, 306, 475
AoxI	GGCC	4 cut(s)	143, 300, 330, 423
ApeKI	GCWGC	3 cut(s)	323, 437, 480
ApoI	RAATTY	2 cut(s)	267, 688
AspLEI	GCGC	2 cut(s)	213, 574
AspS9I	GGNCC	2 cut(s)	331, 423
AsuC2I	CCSGG	1 cut(s)	191
AsuHPI	GGTGA	1 cut(s)	136
AvaI	CYCGRG	4 cut(s)	71, 275, 306, 475
AxyI	CCTNAGG	2 cut(s)	335, 456
BaeGI	GKGCMC	1 cut(s)	313
BarI	GAAGNNNNNNTAC	2 cut(s)	111, 143
BauI	CACGAG	1 cut(s)	94
BbsI	GAAGAC	1 cut(s)	69
BbvI	GCAGC	3 cut(s)	335, 424, 492
BccI	CCATC	4 cut(s)	68, 292, 520, 542
BcnI	CCSGG	1 cut(s)	191
BcoDI	GTCTC	4 cut(s)	58, 173, 437, 478
BfaI	CTAG	1 cut(s)	600
BfoI	RGCGCY	1 cut(s)	575
BglI	GCCNNNNNGGC	2 cut(s)	308, 434
BisI	GCNGC	8 cut(s)	202, 303, 324, 426, 429, 438, 469, 481
BlsI	GCNGC	8 cut(s)	203, 304, 325, 427, 430, 439, 470, 482
Bme1390I	CCNGG	1 cut(s)	191
BmeT110I	CYCGRG	4 cut(s)	71, 275, 306, 475
BmgT120I	GGNCC	2 cut(s)	331, 423
BmiI	GGNNCC	1 cut(s)	249
BmrFI	CCNGG	1 cut(s)	191
BmrI	ACTGGG	1 cut(s)	667
BmuI	ACTGGG	1 cut(s)	667
BpiI	GAAGAC	1 cut(s)	69
BpuEI	CTTGAG	1 cut(s)	314
BpuMI	CCSGG	1 cut(s)	191
BsaHI	GRCGYC	1 cut(s)	471
BsaJI	CCNNGG	2 cut(s)	199, 432
Bsc4I	CCNNNNNNNGG	2 cut(s)	270, 339
Bse118I	RCCGGY	1 cut(s)	158
Bse1I	ACTGG	1 cut(s)	662
Bse21I	CCTNAGG	2 cut(s)	335, 456
BseDI	CCNNGG	2 cut(s)	199, 432
BseGI	GGATG	2 cut(s)	517, 568
BseLI	CCNNNNNNNGG	2 cut(s)	270, 339
BseMII	CTCAG	3 cut(s)	36, 432, 447
BseNI	ACTGG	1 cut(s)	662
BseRI	GAGGAG	2 cut(s)	46, 473
BseSI	GKGCMC	1 cut(s)	313
BseXI	GCAGC	3 cut(s)	335, 424, 492
Bsh1236I	CGCG	1 cut(s)	201
BshFI	GGCC	4 cut(s)	145, 302, 332, 425
BsiHKCI	CYCGRG	4 cut(s)	71, 275, 306, 475
BsiSI	CCGG	3 cut(s)	159, 191, 392
BslFI	GGGAC	1 cut(s)	292
BslI	CCNNNNNNNGG	2 cut(s)	270, 339
BsmAI	GTCTC	4 cut(s)	58, 173, 437, 478
BsmBI	CGTCTC	1 cut(s)	478
BsmFI	GGGAC	1 cut(s)	292
BsnI	GGCC	4 cut(s)	145, 302, 332, 425
BsoBI	CYCGRG	4 cut(s)	71, 275, 306, 475
Bsp1286I	GDGCHC	1 cut(s)	313
BspACI	CCGC	9 cut(s)	122, 199, 201, 303, 426, 429, 468, 608, 629
BspANI	GGCC	4 cut(s)	145, 302, 332, 425
BspCNI	CTCAG	3 cut(s)	35, 433, 448
BspFNI	CGCG	1 cut(s)	201
BspLI	GGNNCC	1 cut(s)	249
BspQI	GCTCTTC	1 cut(s)	581
BsrBI	CCGCTC	1 cut(s)	305
BsrFI	RCCGGY	1 cut(s)	158
BsrI	ACTGG	1 cut(s)	662
BssAI	RCCGGY	1 cut(s)	158
BssECI	CCNNGG	2 cut(s)	199, 432
BssNI	GRCGYC	1 cut(s)	471
BssSI	CACGAG	1 cut(s)	94
Bst2BI	CACGAG	1 cut(s)	94
Bst4CI	ACNGT	1 cut(s)	650
Bst6I	CTCTTC	2 cut(s)	561, 581
BstACI	GRCGYC	1 cut(s)	471
BstC8I	GCNNGC	4 cut(s)	143, 156, 348, 352
BstDEI	CTNAG	4 cut(s)	22, 335, 441, 456
BstDSI	CCRYGG	1 cut(s)	199
BstF5I	GGATG	2 cut(s)	517, 568
BstFNI	CGCG	1 cut(s)	201
BstH2I	RGCGCY	1 cut(s)	575
BstHHI	GCGC	2 cut(s)	213, 574
BstMAI	GTCTC	4 cut(s)	58, 173, 437, 478
BstNSI	RCATGY	2 cut(s)	354, 586
BstSCI	CCNGG	1 cut(s)	189
BstSLI	GKGCMC	1 cut(s)	313
BstUI	CGCG	1 cut(s)	201
BstV1I	GCAGC	3 cut(s)	335, 424, 492
BstV2I	GAAGAC	1 cut(s)	69
Bsu36I	CCTNAGG	2 cut(s)	335, 456
BsuRI	GGCC	4 cut(s)	145, 302, 332, 425
BtgI	CCRYGG	1 cut(s)	199
BtsCI	GGATG	2 cut(s)	517, 568
BtsI	GCAGTG	1 cut(s)	617
BtsIMutI	CAGTG	1 cut(s)	617
Cac8I	GCNNGC	4 cut(s)	143, 156, 348, 352
CfoI	GCGC	2 cut(s)	213, 574
Cfr10I	RCCGGY	1 cut(s)	158
Cfr13I	GGNCC	2 cut(s)	331, 423
Cfr42I	CCGCGG	1 cut(s)	202
CseI	GACGC	1 cut(s)	460
Csp6I	GTAC	1 cut(s)	283
CviAII	CATG	3 cut(s)	351, 583, 604
CviQI	GTAC	1 cut(s)	283
DdeI	CTNAG	4 cut(s)	22, 335, 441, 456
DraIII	CACNNNGTG	1 cut(s)	319
EaeI	YGGCCR	1 cut(s)	300
Eam1104I	CTCTTC	2 cut(s)	561, 581
EarI	CTCTTC	2 cut(s)	561, 581
EciI	GGCGGA	2 cut(s)	618, 623
Eco81I	CCTNAGG	2 cut(s)	335, 456
Eco88I	CYCGRG	4 cut(s)	71, 275, 306, 475
Esp3I	CGTCTC	1 cut(s)	478
FaeI	CATG	3 cut(s)	354, 586, 607
FaiI	YATR	6 cut(s)	352, 507, 584, 605, 653, 700
FaqI	GGGAC	1 cut(s)	292
FatI	CATG	3 cut(s)	350, 582, 603
FblI	GTMKAC	1 cut(s)	195
Fnu4HI	GCNGC	8 cut(s)	202, 303, 324, 426, 429, 438, 469, 481
FokI	GGATG	2 cut(s)	524, 575
Fsp4HI	GCNGC	8 cut(s)	202, 303, 324, 426, 429, 438, 469, 481
FspBI	CTAG	1 cut(s)	600
GlaI	GCGC	2 cut(s)	212, 573
GluI	GCNGC	8 cut(s)	202, 303, 324, 426, 429, 438, 469, 481
HaeII	RGCGCY	1 cut(s)	575
HaeIII	GGCC	4 cut(s)	145, 302, 332, 425
HapII	CCGG	3 cut(s)	159, 191, 392
HgaI	GACGC	1 cut(s)	460
HhaI	GCGC	2 cut(s)	213, 574
Hin1I	GRCGYC	1 cut(s)	471
Hin1II	CATG	3 cut(s)	354, 586, 607
Hin6I	GCGC	2 cut(s)	211, 572
HinP1I	GCGC	2 cut(s)	211, 572
HinfI	GANTC	7 cut(s)	26, 47, 74, 106, 181, 368, 683
HpaII	CCGG	3 cut(s)	159, 191, 392
HphI	GGTGA	1 cut(s)	136
Hpy166II	GTNNAC	2 cut(s)	196, 617
Hpy188I	TCNGA	3 cut(s)	25, 91, 115
Hpy188III	TCNNGA	4 cut(s)	103, 277, 293, 475
Hpy8I	GTNNAC	2 cut(s)	196, 617
Hpy99I	CGWCG	1 cut(s)	119
HpyCH4III	ACNGT	1 cut(s)	650
HpyCH4IV	ACGT	1 cut(s)	281
HpyF3I	CTNAG	4 cut(s)	22, 335, 441, 456
HpySE526I	ACGT	1 cut(s)	281
Hsp92I	GRCGYC	1 cut(s)	471
Hsp92II	CATG	3 cut(s)	354, 586, 607
HspAI	GCGC	2 cut(s)	211, 572
KspI	CCGCGG	1 cut(s)	202
LguI	GCTCTTC	1 cut(s)	581
LmnI	GCTCC	2 cut(s)	247, 702
Lsp1109I	GCAGC	3 cut(s)	335, 424, 492
MaeI	CTAG	1 cut(s)	600
MaeII	ACGT	1 cut(s)	281
MaeIII	GTNAC	1 cut(s)	485
MbiI	CCGCTC	1 cut(s)	305
MboII	GAAGA	7 cut(s)	69, 72, 160, 550, 553, 568, 578
MhlI	GDGCHC	1 cut(s)	313
MluCI	AATT	4 cut(s)	10, 267, 358, 688
MlyI	GAGTC	5 cut(s)	20, 83, 100, 175, 692
MmeI	TCCRAC	2 cut(s)	54, 138
MspA1I	CMGCKG	2 cut(s)	201, 483
MspI	CCGG	3 cut(s)	159, 191, 392
MspR9I	CCNGG	1 cut(s)	191
MvnI	CGCG	1 cut(s)	201
NciI	CCSGG	1 cut(s)	191
NlaIII	CATG	3 cut(s)	354, 586, 607
NlaIV	GGNNCC	1 cut(s)	249
NmeAIII	GCCGAG	1 cut(s)	457
NmuCI	GTSAC	1 cut(s)	485
NspI	RCATGY	2 cut(s)	354, 586
PaeI	GCATGC	1 cut(s)	354
PaeR7I	CTCGAG	1 cut(s)	475
PciSI	GCTCTTC	1 cut(s)	581
PcsI	WCGNNNNNNNCGW	3 cut(s)	101, 143, 369
PfeI	GAWTC	2 cut(s)	47, 368
PflMI	CCANNNNNTGG	1 cut(s)	270
PkrI	GCNGC	8 cut(s)	203, 304, 325, 427, 430, 439, 470, 482
PleI	GAGTC	5 cut(s)	20, 82, 100, 175, 691
PpsI	GAGTC	5 cut(s)	20, 82, 100, 175, 691
PspN4I	GGNNCC	1 cut(s)	249
PspPI	GGNCC	2 cut(s)	331, 423
PsrI	GAACNNNNNNTAC	1 cut(s)	28
PvuII	CAGCTG	1 cut(s)	483
RsaI	GTAC	1 cut(s)	284
RsaNI	GTAC	1 cut(s)	283
SacII	CCGCGG	1 cut(s)	202
SapI	GCTCTTC	1 cut(s)	581
SatI	GCNGC	8 cut(s)	202, 303, 324, 426, 429, 438, 469, 481
Sau96I	GGNCC	2 cut(s)	331, 423
SchI	GAGTC	5 cut(s)	20, 83, 100, 175, 692
ScrFI	CCNGG	1 cut(s)	191
SduI	GDGCHC	1 cut(s)	313
Sfr274I	CTCGAG	1 cut(s)	475
Sfr303I	CCGCGG	1 cut(s)	202
SgrBI	CCGCGG	1 cut(s)	202
SlaI	CTCGAG	1 cut(s)	475
SmlI	CTYRAG	2 cut(s)	293, 475
SmoI	CTYRAG	2 cut(s)	293, 475
SphI	GCATGC	1 cut(s)	354
Sse9I	AATT	4 cut(s)	10, 267, 358, 688
SsiI	CCGC	9 cut(s)	122, 199, 201, 303, 426, 429, 468, 608, 629
SspMI	CTAG	1 cut(s)	600
StyD4I	CCNGG	1 cut(s)	189
TaaI	ACNGT	1 cut(s)	650
TaiI	ACGT	1 cut(s)	284
TaqI	TCGA	6 cut(s)	45, 137, 411, 451, 476, 579
TasI	AATT	4 cut(s)	10, 267, 358, 688
TauI	GCSGC	5 cut(s)	204, 305, 428, 431, 471
TfiI	GAWTC	2 cut(s)	47, 368
TscAI	CASTG	1 cut(s)	624
TseFI	GTSAC	1 cut(s)	485
TseI	GCWGC	3 cut(s)	323, 437, 480
Tsp45I	GTSAC	1 cut(s)	485
TspDTI	ATGAA	2 cut(s)	17, 579
TspGWI	ACGGA	1 cut(s)	361
TspRI	CASTG	1 cut(s)	624
Van91I	CCANNNNNTGG	1 cut(s)	270
XapI	RAATTY	2 cut(s)	267, 688
XceI	RCATGY	2 cut(s)	354, 586
XhoI	CTCGAG	1 cut(s)	475
XmiI	GTMKAC	1 cut(s)	195
XspI	CTAG	1 cut(s)	600

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.