Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0000958

Physical Location & Seq

Genomic Coordinates Reverse (-)

10049939 .. 10050631

Gene Structure 693 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G089900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

GTTTCTGACTCGGCCGACCAGCCCAGGTCGAGTTCGTCATCCGACGCAAGCGTGAGCACCTTACGCACTTCGGACGTCATACTGGCGTCGAGCAGTCCGAAGAAGCGCGCGGGAAGGAAGGTTTTCAAAGAGACGAGGCACCCGGTTTATAGGGGTGTGAGGAGGAGAGACAACAACAAGTGGGTGTGTGAGTTGAGACAGCCCAACAAGAAGAAGTCCGGGATTTGGCTCGGGACCTATCCTACGGCTGAGATGGCTGCTCGTGCCCATGACGTGGCGGCATTGGCTTTTAAAGGGAAGCTTGCCTGCCTCAACTTTGCTGACTCGGGTTGGCGGCTGCCGGTCGCGGCATCCATGGATTCCATGGATATCCAGAGGGCAGCTGCGGAGGCCGCTGAAGGGTTCAGACCGGTGGAGTTCGGTGGGGTTTCCAGCGGCAGCAGTGATGAGAAGGAGAGAATGGTTGTGGTGGAAGAGAAGAAGAAGAAGCAGGCTATTGTGGATATGGGAAAAAGCTGCAGCAGATTAAACTTGTTTTATTTGGATGAGGAGGAAATGTTTGATATGCCAAGGTTGATTGACAACATGGCTGAAGGGCTTCTTCTTTCTCCACCCCAATGCTTAGCTGGCTATTTGAATTGGGATGACATGGAAACTGAAGCTGATTCCAAGTTGTGGAGTTTCTCTATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0001558 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009889 GO:0009987 GO:0010035 GO:0010371 GO:0010468 GO:0010556 GO:0010565 GO:0010817 GO:0016143 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0019748 GO:0019757 GO:0019760 GO:0022603 GO:0022604 GO:0031323 GO:0031326 GO:0032350 GO:0040008 GO:0040034 GO:0042221 GO:0043436 GO:0043455 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0046885 GO:0046890 GO:0048506 GO:0048509 GO:0048510 GO:0048638 GO:0050789 GO:0050793 GO:0050794 GO:0050826 GO:0050896 GO:0051128 GO:0051171 GO:0051252 GO:0051510 GO:0060255 GO:0062012 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

231

Amino Acids

25.52

Weight (kDa)

7.78

Isoelectric Point (pI)

54.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000958)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12610 AT1G63030 AT1G63030
fragaria_vesca	FvH4_5g01440
malus_domestica	MD04G1067800.v1.1 MD04G1067900.v1.1 MD06G1072300.v1.1
prunus_persica	Prupe.5G089900_v2.0.a1 Prupe.5G090000_v2.0.a1 Prupe.5G090100_v2.0.a1 Prupe.5G090200_v2.0.a1 Prupe.5G090500_v2.0.a1
pyrus_communis	pycom04g06140 pycom06g07110 pycom06g07120
rosa_chinensis	RchiOBHm_Chr7g0199251 RchiOBHm_Chr7g0199301 RchiOBHm_Chr7g0199331 RchiOBHm_Chr7g0199351 RchiOBHm_Chr7g0199381
rosa_laevigata	RLG00000002739 RLG00000002740 RLG00000003796 RLG00000003799 RLG00000003801
rosa_multiflora	Rmu_co8046292.1_g000001 Rmu_co8280319.1_g000001 Rmu_sc0000855.1_g000009 Rmu_sc0000950.1_g000001 Rmu_sc0000950.1_g000005 Rmu_sc0007820.1_g000002 Rmu_sc0010720.1_g000001 Rmu_sc0039534.1_g000001
rosa_roxburghii	Rroxscaffold_3G00256750 Rroxscaffold_3G00256770 Rroxscaffold_3G00256870 Rroxscaffold_5G00359530
rosa_rugosa	Rorug07G0053500 Rorug07G0053500 Rorug07G0053500 Rorug07G0053800
rosa_samantha	Rh4BG264100 Rh7AG177700 Rh7AG177900 Rh7AG178000 Rh7AG178100 Rh7AG178600 Rh7BG181300 Rh7BG181400 Rh7BG181600 Rh7BG181900 Rh7BG182100 Rh7CG186800 Rh7CG187000 Rh7CG187200 Rh7CG187400 Rh7DG180800 Rh7DG181700
rosa_wichuraiana	Rw7G015620 Rw7G015630 Rw7G015650 Rw7G015670 Rw7G015680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	78
AccB1I	GGYRCC	1 cut(s)	138
AccB7I	CCANNNNNTGG	2 cut(s)	274, 675
AccII	CGCG	3 cut(s)	108, 110, 347
AciI	CCGC	7 cut(s)	110, 278, 334, 347, 386, 393, 435
AcoI	YGGCCR	1 cut(s)	12
AcuI	CTGAAG	3 cut(s)	417, 612, 678
AcyI	GRCGYC	2 cut(s)	75, 86
AfiI	CCNNNNNNNGG	4 cut(s)	225, 274, 399, 675
AgeI	ACCGGT	1 cut(s)	409
AgsI	TTSAA	2 cut(s)	127, 637
AjiI	CACGTC	1 cut(s)	274
AjnI	CCWGG	1 cut(s)	23
AluBI	AGCT	5 cut(s)	301, 383, 516, 626, 662
AluI	AGCT	5 cut(s)	301, 383, 516, 626, 662
Alw21I	GWGCWC	1 cut(s)	59
Alw26I	GTCTC	3 cut(s)	125, 162, 190
Ama87I	CYCGRG	2 cut(s)	230, 325
AoxI	GGCC	2 cut(s)	12, 390
ApeKI	GCWGC	7 cut(s)	257, 337, 380, 383, 438, 516, 519
AsiGI	ACCGGT	1 cut(s)	409
Asp700I	GAANNNNTTC	2 cut(s)	122, 597
AspLEI	GCGC	2 cut(s)	108, 110
AspS9I	GGNCC	1 cut(s)	234
AsuC2I	CCSGG	2 cut(s)	143, 220
AvaI	CYCGRG	2 cut(s)	230, 325
AvaII	GGWCC	1 cut(s)	234
BaeGI	GKGCMC	1 cut(s)	268
BanI	GGYRCC	1 cut(s)	138
BauI	CACGAG	1 cut(s)	261
Bbv12I	GWGCWC	1 cut(s)	59
BbvI	GCAGC	7 cut(s)	244, 324, 370, 392, 450, 503, 531
BccI	CCATC	1 cut(s)	247
BceAI	ACGGC	1 cut(s)	261
BciT130I	CCWGG	1 cut(s)	25
BcnI	CCSGG	2 cut(s)	143, 220
BcoDI	GTCTC	3 cut(s)	125, 162, 190
BfmI	CTRYAG	1 cut(s)	517
BlpI	GCTNAGC	1 cut(s)	622
Bme1390I	CCNGG	3 cut(s)	25, 143, 220
Bme18I	GGWCC	1 cut(s)	234
BmeT110I	CYCGRG	2 cut(s)	230, 325
BmgBI	CACGTC	1 cut(s)	274
BmgT120I	GGNCC	1 cut(s)	234
BmiI	GGNNCC	2 cut(s)	140, 235
BmrFI	CCNGG	3 cut(s)	25, 143, 220
BmsI	GCATC	1 cut(s)	359
Bpu1102I	GCTNAGC	1 cut(s)	622
BpuMI	CCSGG	2 cut(s)	143, 220
BsaHI	GRCGYC	2 cut(s)	75, 86
BsaJI	CCNNGG	4 cut(s)	23, 354, 363, 569
BsaWI	WCCGGW	1 cut(s)	409
BsaXI	ACNNNNNCTCC	2 cut(s)	542, 572
Bsc4I	CCNNNNNNNGG	4 cut(s)	225, 274, 399, 675
Bse118I	RCCGGY	2 cut(s)	340, 409
Bse1I	ACTGG	1 cut(s)	87
BseBI	CCWGG	1 cut(s)	25
BseDI	CCNNGG	4 cut(s)	23, 354, 363, 569
BseGI	GGATG	4 cut(s)	38, 350, 550, 649
BseLI	CCNNNNNNNGG	4 cut(s)	225, 274, 399, 675
BseMII	CTCAG	1 cut(s)	240
BseNI	ACTGG	1 cut(s)	87
BsePI	GCGCGC	1 cut(s)	106
BseRI	GAGGAG	3 cut(s)	175, 178, 563
BseSI	GKGCMC	1 cut(s)	268
BseX3I	CGGCCG	1 cut(s)	12
BseXI	GCAGC	7 cut(s)	244, 324, 370, 392, 450, 503, 531
Bsh1236I	CGCG	3 cut(s)	108, 110, 347
Bsh1285I	CGRYCG	2 cut(s)	15, 345
BshFI	GGCC	2 cut(s)	14, 392
BshNI	GGYRCC	1 cut(s)	138
BshTI	ACCGGT	1 cut(s)	409
BsiEI	CGRYCG	2 cut(s)	15, 345
BsiHKAI	GWGCWC	1 cut(s)	59
BsiHKCI	CYCGRG	2 cut(s)	230, 325
BsiSI	CCGG	4 cut(s)	143, 219, 341, 410
BslFI	GGGAC	1 cut(s)	247
BslI	CCNNNNNNNGG	4 cut(s)	225, 274, 399, 675
BsmAI	GTCTC	3 cut(s)	125, 162, 190
BsmBI	CGTCTC	1 cut(s)	125
BsmFI	GGGAC	1 cut(s)	247
BsnI	GGCC	2 cut(s)	14, 392
BsoBI	CYCGRG	2 cut(s)	230, 325
Bsp1286I	GDGCHC	2 cut(s)	59, 268
Bsp1720I	GCTNAGC	1 cut(s)	622
Bsp19I	CCATGG	2 cut(s)	354, 363
BspACI	CCGC	7 cut(s)	110, 278, 334, 347, 386, 393, 435
BspANI	GGCC	2 cut(s)	14, 392
BspCNI	CTCAG	1 cut(s)	241
BspFNI	CGCG	3 cut(s)	108, 110, 347
BspLI	GGNNCC	2 cut(s)	140, 235
BspMAI	CTGCAG	1 cut(s)	521
BspT107I	GGYRCC	1 cut(s)	138
BsrFI	RCCGGY	2 cut(s)	340, 409
BsrI	ACTGG	1 cut(s)	87
BssAI	RCCGGY	2 cut(s)	340, 409
BssECI	CCNNGG	4 cut(s)	23, 354, 363, 569
BssHII	GCGCGC	1 cut(s)	106
BssNI	GRCGYC	2 cut(s)	75, 86
BssSI	CACGAG	1 cut(s)	261
BssT1I	CCWWGG	3 cut(s)	354, 363, 569
Bst2BI	CACGAG	1 cut(s)	261
Bst2UI	CCWGG	1 cut(s)	25
Bst6I	CTCTTC	1 cut(s)	468
BstACI	GRCGYC	2 cut(s)	75, 86
BstC8I	GCNNGC	6 cut(s)	49, 108, 303, 307, 492, 628
BstDEI	CTNAG	2 cut(s)	249, 622
BstDSI	CCRYGG	2 cut(s)	354, 363
BstF5I	GGATG	4 cut(s)	38, 350, 550, 649
BstFNI	CGCG	3 cut(s)	108, 110, 347
BstHHI	GCGC	2 cut(s)	108, 110
BstMAI	GTCTC	3 cut(s)	125, 162, 190
BstMCI	CGRYCG	2 cut(s)	15, 345
BstMWI	GCNNNNNNNGC	7 cut(s)	63, 254, 263, 284, 389, 392, 627
BstNI	CCWGG	1 cut(s)	25
BstSCI	CCNGG	3 cut(s)	23, 141, 218
BstSFI	CTRYAG	1 cut(s)	517
BstSLI	GKGCMC	1 cut(s)	268
BstUI	CGCG	3 cut(s)	108, 110, 347
BstV1I	GCAGC	7 cut(s)	244, 324, 370, 392, 450, 503, 531
BstZI	CGGCCG	1 cut(s)	12
BsuRI	GGCC	2 cut(s)	14, 392
BtgI	CCRYGG	2 cut(s)	354, 363
BtrI	CACGTC	1 cut(s)	274
BtsCI	GGATG	4 cut(s)	38, 350, 550, 649
BtsI	GCAGTG	1 cut(s)	448
BtsIMutI	CAGTG	1 cut(s)	448
Cac8I	GCNNGC	6 cut(s)	49, 108, 303, 307, 492, 628
CfoI	GCGC	2 cut(s)	108, 110
Cfr10I	RCCGGY	2 cut(s)	340, 409
Cfr13I	GGNCC	1 cut(s)	234
CseI	GACGC	2 cut(s)	53, 75
CspAI	ACCGGT	1 cut(s)	409
CviAII	CATG	5 cut(s)	269, 355, 364, 586, 649
DdeI	CTNAG	2 cut(s)	249, 622
DraI	TTTAAA	1 cut(s)	292
EaeI	YGGCCR	1 cut(s)	12
EagI	CGGCCG	1 cut(s)	12
Eam1104I	CTCTTC	1 cut(s)	468
EarI	CTCTTC	1 cut(s)	468
EclXI	CGGCCG	1 cut(s)	12
Eco130I	CCWWGG	3 cut(s)	354, 363, 569
Eco32I	GATATC	1 cut(s)	370
Eco47I	GGWCC	1 cut(s)	234
Eco52I	CGGCCG	1 cut(s)	12
Eco57I	CTGAAG	3 cut(s)	417, 612, 678
Eco88I	CYCGRG	2 cut(s)	230, 325
EcoO109I	RGGNCCY	1 cut(s)	234
EcoRII	CCWGG	1 cut(s)	23
EcoRV	GATATC	1 cut(s)	370
EcoT14I	CCWWGG	3 cut(s)	354, 363, 569
ErhI	CCWWGG	3 cut(s)	354, 363, 569
Esp3I	CGTCTC	1 cut(s)	125
FaeI	CATG	5 cut(s)	272, 358, 367, 589, 652
FaiI	YATR	9 cut(s)	80, 150, 270, 356, 365, 506, 566, 587, 650
FalI	AAGNNNNNCTT	4 cut(s)	285, 317, 585, 617
FaqI	GGGAC	1 cut(s)	247
FatI	CATG	5 cut(s)	268, 354, 363, 585, 648
FauI	CCCGC	1 cut(s)	103
FokI	GGATG	4 cut(s)	25, 337, 557, 656
GlaI	GCGC	2 cut(s)	107, 109
HaeIII	GGCC	2 cut(s)	14, 392
HapII	CCGG	4 cut(s)	143, 219, 341, 410
HgaI	GACGC	2 cut(s)	53, 75
HhaI	GCGC	2 cut(s)	108, 110
Hin1I	GRCGYC	2 cut(s)	75, 86
Hin1II	CATG	5 cut(s)	272, 358, 367, 589, 652
Hin6I	GCGC	2 cut(s)	106, 108
HinP1I	GCGC	2 cut(s)	106, 108
HindIII	AAGCTT	1 cut(s)	299
HinfI	GANTC	4 cut(s)	8, 323, 359, 665
HpaII	CCGG	4 cut(s)	143, 219, 341, 410
Hpy188I	TCNGA	6 cut(s)	7, 43, 73, 99, 407, 692
Hpy188III	TCNNGA	2 cut(s)	232, 373
Hpy99I	CGWCG	2 cut(s)	47, 91
HpyAV	CCTTC	5 cut(s)	108, 112, 392, 445, 587
HpyCH4IV	ACGT	2 cut(s)	75, 273
HpyCH4V	TGCA	1 cut(s)	519
HpyF10VI	GCNNNNNNNGC	7 cut(s)	63, 254, 263, 284, 389, 392, 627
HpyF3I	CTNAG	2 cut(s)	249, 622
HpySE526I	ACGT	2 cut(s)	75, 273
Hsp92I	GRCGYC	2 cut(s)	75, 86
Hsp92II	CATG	5 cut(s)	272, 358, 367, 589, 652
HspAI	GCGC	2 cut(s)	106, 108
Lsp1109I	GCAGC	7 cut(s)	244, 324, 370, 392, 450, 503, 531
LweI	GCATC	1 cut(s)	359
MaeII	ACGT	2 cut(s)	75, 273
MboII	GAAGA	7 cut(s)	112, 223, 485, 490, 493, 496, 593
MhlI	GDGCHC	2 cut(s)	59, 268
MluCI	AATT	1 cut(s)	637
MlyI	GAGTC	2 cut(s)	2, 317
MmeI	TCCRAC	1 cut(s)	66
MnlI	CCTC	8 cut(s)	129, 153, 156, 320, 369, 382, 541, 544
MroXI	GAANNNNTTC	2 cut(s)	122, 597
MseI	TTAA	2 cut(s)	291, 527
MslI	CAYNNNNRTG	1 cut(s)	616
MspA1I	CMGCKG	3 cut(s)	383, 395, 435
MspI	CCGG	4 cut(s)	143, 219, 341, 410
MspR9I	CCNGG	3 cut(s)	25, 143, 220
MvaI	CCWGG	1 cut(s)	25
MvnI	CGCG	3 cut(s)	108, 110, 347
MwoI	GCNNNNNNNGC	7 cut(s)	63, 254, 263, 284, 389, 392, 627
NciI	CCSGG	2 cut(s)	143, 220
NcoI	CCATGG	2 cut(s)	354, 363
NlaIII	CATG	5 cut(s)	272, 358, 367, 589, 652
NlaIV	GGNNCC	2 cut(s)	140, 235
PauI	GCGCGC	1 cut(s)	106
PcsI	WCGNNNNNNNCGW	1 cut(s)	95
PdmI	GAANNNNTTC	2 cut(s)	122, 597
PfeI	GAWTC	2 cut(s)	359, 665
PflMI	CCANNNNNTGG	2 cut(s)	274, 675
PfoI	TCCNGGA	1 cut(s)	218
PinAI	ACCGGT	1 cut(s)	409
PleI	GAGTC	2 cut(s)	2, 317
PpsI	GAGTC	2 cut(s)	2, 317
PpuMI	RGGWCCY	1 cut(s)	234
Psp5II	RGGWCCY	1 cut(s)	234
Psp6I	CCWGG	1 cut(s)	23
PspGI	CCWGG	1 cut(s)	23
PspN4I	GGNNCC	2 cut(s)	140, 235
PspPI	GGNCC	1 cut(s)	234
PspPPI	RGGWCCY	1 cut(s)	234
PstI	CTGCAG	1 cut(s)	521
PteI	GCGCGC	1 cut(s)	106
PvuII	CAGCTG	1 cut(s)	383
RseI	CAYNNNNRTG	1 cut(s)	616
SaqAI	TTAA	2 cut(s)	291, 527
Sau96I	GGNCC	1 cut(s)	234
SchI	GAGTC	2 cut(s)	2, 317
ScrFI	CCNGG	3 cut(s)	25, 143, 220
SduI	GDGCHC	2 cut(s)	59, 268
SfaNI	GCATC	1 cut(s)	359
SfcI	CTRYAG	1 cut(s)	517
SinI	GGWCC	1 cut(s)	234
SmiMI	CAYNNNNRTG	1 cut(s)	616
Sse9I	AATT	1 cut(s)	637
SsiI	CCGC	7 cut(s)	110, 278, 334, 347, 386, 393, 435
StyD4I	CCNGG	3 cut(s)	23, 141, 218
StyI	CCWWGG	3 cut(s)	354, 363, 569
TaiI	ACGT	2 cut(s)	78, 276
TaqI	TCGA	2 cut(s)	29, 89
TasI	AATT	1 cut(s)	637
TauI	GCSGC	5 cut(s)	281, 337, 350, 395, 438
TfiI	GAWTC	2 cut(s)	359, 665
Tru1I	TTAA	2 cut(s)	291, 527
Tru9I	TTAA	2 cut(s)	291, 527
TscAI	CASTG	1 cut(s)	448
TseI	GCWGC	7 cut(s)	257, 337, 380, 383, 438, 516, 519
TspRI	CASTG	1 cut(s)	448
Van91I	CCANNNNNTGG	2 cut(s)	274, 675
VpaK11BI	GGWCC	1 cut(s)	234
XcmI	CCANNNNNNNNNTGG	2 cut(s)	361, 623
XmnI	GAANNNNTTC	2 cut(s)	122, 597
ZraI	GACGTC	1 cut(s)	76

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.