Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000950.1

Orthogroup ID

OG0000958

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 402

Gene Structure 401 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000950.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 401 bp

atgtatataagccctcccacccgtcgtttttgtttcataagccttttccccagaacacagtctactaagaaaaccaaactcacactaccctcagcgaagaaaaccaaaccagctctacttcagatgaactccagttaccagttctcagactccaaccagcaaagcctcgaatcagtctcctccatcgacaagcccgagtcgtcttccttatctgacacgagcatcacgactcgccgttcacctcgttccgacggagcgatgatacttgcttcgagcaggccgaagaagcgagccggtaggcgagtgttcaaggagactcggcacccggtctaccgcggcgtgaggcgcaggaacaataacaagtgggtgtgcgaggtcagggagccgaacaaaaagaccag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0001558 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009889 GO:0009987 GO:0010035 GO:0010371 GO:0010468 GO:0010556 GO:0010565 GO:0010817 GO:0016143 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0019748 GO:0019757 GO:0019760 GO:0022603 GO:0022604 GO:0031323 GO:0031326 GO:0032350 GO:0040008 GO:0040034 GO:0042221 GO:0043436 GO:0043455 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0046885 GO:0046890 GO:0048506 GO:0048509 GO:0048510 GO:0048638 GO:0050789 GO:0050793 GO:0050794 GO:0050826 GO:0050896 GO:0051128 GO:0051171 GO:0051252 GO:0051510 GO:0060255 GO:0062012 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

133

Amino Acids

15.27

Weight (kDa)

11.16

Isoelectric Point (pI)

81.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000958)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12610 AT1G63030 AT1G63030
fragaria_vesca	FvH4_5g01440
malus_domestica	MD04G1067800.v1.1 MD04G1067900.v1.1 MD06G1072300.v1.1
prunus_persica	Prupe.5G089900_v2.0.a1 Prupe.5G090000_v2.0.a1 Prupe.5G090100_v2.0.a1 Prupe.5G090200_v2.0.a1 Prupe.5G090500_v2.0.a1
pyrus_communis	pycom04g06140 pycom06g07110 pycom06g07120
rosa_chinensis	RchiOBHm_Chr7g0199251 RchiOBHm_Chr7g0199301 RchiOBHm_Chr7g0199331 RchiOBHm_Chr7g0199351 RchiOBHm_Chr7g0199381
rosa_laevigata	RLG00000002739 RLG00000002740 RLG00000003796 RLG00000003799 RLG00000003801
rosa_multiflora	Rmu_co8046292.1_g000001 Rmu_co8280319.1_g000001 Rmu_sc0000855.1_g000009 Rmu_sc0000950.1_g000001 Rmu_sc0000950.1_g000005 Rmu_sc0007820.1_g000002 Rmu_sc0010720.1_g000001 Rmu_sc0039534.1_g000001
rosa_roxburghii	Rroxscaffold_3G00256750 Rroxscaffold_3G00256770 Rroxscaffold_3G00256870 Rroxscaffold_5G00359530
rosa_rugosa	Rorug07G0053500 Rorug07G0053500 Rorug07G0053500 Rorug07G0053800
rosa_samantha	Rh4BG264100 Rh7AG177700 Rh7AG177900 Rh7AG178000 Rh7AG178100 Rh7AG178600 Rh7BG181300 Rh7BG181400 Rh7BG181600 Rh7BG181900 Rh7BG182100 Rh7CG186800 Rh7CG187000 Rh7CG187200 Rh7CG187400 Rh7DG180800 Rh7DG181700
rosa_wichuraiana	Rw7G015620 Rw7G015630 Rw7G015650 Rw7G015670 Rw7G015680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	321
AccI	GTMKAC	2 cut(s)	62, 330
AccII	CGCG	1 cut(s)	336
AciI	CCGC	2 cut(s)	334, 336
AcuI	CTGAAG	1 cut(s)	104
AgsI	TTSAA	1 cut(s)	310
AluBI	AGCT	1 cut(s)	113
AluI	AGCT	1 cut(s)	113
Alw26I	GTCTC	2 cut(s)	181, 308
Ama87I	CYCGRG	1 cut(s)	194
AoxI	GGCC	1 cut(s)	278
AspLEI	GCGC	1 cut(s)	348
AsuC2I	CCSGG	1 cut(s)	326
AsuHPI	GGTGA	1 cut(s)	231
AvaI	CYCGRG	1 cut(s)	194
BanI	GGYRCC	1 cut(s)	321
BauI	CACGAG	1 cut(s)	217
BbsI	GAAGAC	1 cut(s)	195
BbvCI	CCTCAGC	1 cut(s)	91
BccI	CCATC	1 cut(s)	191
BceAI	ACGGC	1 cut(s)	219
BcnI	CCSGG	1 cut(s)	326
BcoDI	GTCTC	2 cut(s)	181, 308
BisI	GCNGC	1 cut(s)	337
BlsI	GCNGC	1 cut(s)	338
Bme1390I	CCNGG	1 cut(s)	326
BmeT110I	CYCGRG	1 cut(s)	194
BmiI	GGNNCC	2 cut(s)	323, 384
BmrFI	CCNGG	1 cut(s)	326
BmsI	GCATC	1 cut(s)	231
BpiI	GAAGAC	1 cut(s)	195
BpmI	CTGGAG	1 cut(s)	115
Bpu10I	CCTNAGC	1 cut(s)	91
BpuMI	CCSGG	1 cut(s)	326
BsaJI	CCNNGG	1 cut(s)	334
Bse118I	RCCGGY	1 cut(s)	293
Bse1I	ACTGG	2 cut(s)	132, 139
BseDI	CCNNGG	1 cut(s)	334
BseMII	CTCAG	2 cut(s)	105, 159
BseNI	ACTGG	2 cut(s)	132, 139
BseRI	GAGGAG	1 cut(s)	169
Bsh1236I	CGCG	1 cut(s)	336
BshFI	GGCC	1 cut(s)	280
BshNI	GGYRCC	1 cut(s)	321
BsiHKCI	CYCGRG	1 cut(s)	194
BsiSI	CCGG	2 cut(s)	294, 326
BsmAI	GTCTC	2 cut(s)	181, 308
BsnI	GGCC	1 cut(s)	280
BsoBI	CYCGRG	1 cut(s)	194
BspACI	CCGC	2 cut(s)	334, 336
BspANI	GGCC	1 cut(s)	280
BspCNI	CTCAG	2 cut(s)	104, 158
BspFNI	CGCG	1 cut(s)	336
BspLI	GGNNCC	2 cut(s)	323, 384
BspT107I	GGYRCC	1 cut(s)	321
BsrFI	RCCGGY	1 cut(s)	293
BsrI	ACTGG	2 cut(s)	132, 139
BssAI	RCCGGY	1 cut(s)	293
BssECI	CCNNGG	1 cut(s)	334
BssSI	CACGAG	1 cut(s)	217
Bst2BI	CACGAG	1 cut(s)	217
Bst4CI	ACNGT	1 cut(s)	60
BstC8I	GCNNGC	2 cut(s)	278, 291
BstDEI	CTNAG	3 cut(s)	66, 91, 145
BstDSI	CCRYGG	1 cut(s)	334
BstFNI	CGCG	1 cut(s)	336
BstHHI	GCGC	1 cut(s)	348
BstMAI	GTCTC	2 cut(s)	181, 308
BstMWI	GCNNNNNNNGC	2 cut(s)	286, 345
BstSCI	CCNGG	1 cut(s)	324
BstUI	CGCG	1 cut(s)	336
BstV2I	GAAGAC	1 cut(s)	195
BsuRI	GGCC	1 cut(s)	280
BtgI	CCRYGG	1 cut(s)	334
BtgZI	GCGATG	1 cut(s)	272
Cac8I	GCNNGC	2 cut(s)	278, 291
CfoI	GCGC	1 cut(s)	348
Cfr10I	RCCGGY	1 cut(s)	293
Cfr42I	CCGCGG	1 cut(s)	337
CviJI	RGCY	8 cut(s)	12, 42, 113, 165, 193, 280, 293, 385
CviKI_1	RGCY	8 cut(s)	12, 42, 113, 165, 193, 280, 293, 385
DdeI	CTNAG	3 cut(s)	66, 91, 145
Eco57I	CTGAAG	1 cut(s)	104
Eco88I	CYCGRG	1 cut(s)	194
FaiI	YATR	3 cut(s)	6, 8, 38
FblI	GTMKAC	2 cut(s)	62, 330
Fnu4HI	GCNGC	1 cut(s)	337
Fsp4HI	GCNGC	1 cut(s)	337
GlaI	GCGC	1 cut(s)	347
GluI	GCNGC	1 cut(s)	337
GsuI	CTGGAG	1 cut(s)	115
HaeIII	GGCC	1 cut(s)	280
HapII	CCGG	2 cut(s)	294, 326
HhaI	GCGC	1 cut(s)	348
Hin6I	GCGC	1 cut(s)	346
HinP1I	GCGC	1 cut(s)	346
HinfI	GANTC	5 cut(s)	149, 170, 197, 229, 316
HpaII	CCGG	2 cut(s)	294, 326
HphI	GGTGA	1 cut(s)	231
Hpy166II	GTNNAC	3 cut(s)	63, 239, 331
Hpy188I	TCNGA	4 cut(s)	123, 148, 214, 250
Hpy188III	TCNNGA	1 cut(s)	226
Hpy8I	GTNNAC	3 cut(s)	63, 239, 331
Hpy99I	CGWCG	2 cut(s)	27, 254
HpyCH4III	ACNGT	1 cut(s)	60
HpyF10VI	GCNNNNNNNGC	2 cut(s)	286, 345
HpyF3I	CTNAG	3 cut(s)	66, 91, 145
HspAI	GCGC	1 cut(s)	346
KspI	CCGCGG	1 cut(s)	337
LmnI	GCTCC	2 cut(s)	254, 382
LweI	GCATC	1 cut(s)	231
MaeIII	GTNAC	1 cut(s)	134
MboII	GAAGA	3 cut(s)	109, 195, 295
MlyI	GAGTC	4 cut(s)	143, 206, 223, 310
MmeI	TCCRAC	2 cut(s)	177, 273
MnlI	CCTC	7 cut(s)	24, 100, 176, 190, 252, 336, 367
MspA1I	CMGCKG	1 cut(s)	336
MspI	CCGG	2 cut(s)	294, 326
MspR9I	CCNGG	1 cut(s)	326
MvnI	CGCG	1 cut(s)	336
MwoI	GCNNNNNNNGC	2 cut(s)	286, 345
NciI	CCSGG	1 cut(s)	326
NlaIV	GGNNCC	2 cut(s)	323, 384
NmeAIII	GCCGAG	1 cut(s)	298
PcsI	WCGNNNNNNNCGW	3 cut(s)	192, 224, 278
PfeI	GAWTC	1 cut(s)	170
PkrI	GCNGC	1 cut(s)	338
PleI	GAGTC	4 cut(s)	143, 205, 223, 310
PpsI	GAGTC	4 cut(s)	143, 205, 223, 310
PspN4I	GGNNCC	2 cut(s)	323, 384
PsrI	GAACNNNNNNTAC	4 cut(s)	46, 78, 119, 151
SacII	CCGCGG	1 cut(s)	337
SatI	GCNGC	1 cut(s)	337
SchI	GAGTC	4 cut(s)	143, 206, 223, 310
ScrFI	CCNGG	1 cut(s)	326
SetI	ASST	3 cut(s)	115, 244, 378
SfaNI	GCATC	1 cut(s)	231
Sfr303I	CCGCGG	1 cut(s)	337
SgrBI	CCGCGG	1 cut(s)	337
SsiI	CCGC	2 cut(s)	334, 336
StyD4I	CCNGG	1 cut(s)	324
TaaI	ACNGT	1 cut(s)	60
TaqI	TCGA	3 cut(s)	168, 186, 272
TauI	GCSGC	1 cut(s)	339
TfiI	GAWTC	1 cut(s)	170
TspDTI	ATGAA	2 cut(s)	25, 140
TspGWI	ACGGA	1 cut(s)	267
XmiI	GTMKAC	2 cut(s)	62, 330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.