Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0000958

Physical Location & Seq

Genomic Coordinates Forward (+)

14434926 .. 14435805

Gene Structure 880 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG181900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGAATAGCTCCAATTACCAGCTCTCAGACTCCAACCAGAAAAGCCTCGAATCAGTCTCCTCCATCGACAAGCCCGAGTCGTCTTCCTTATCTGACACGAGCGTCACGACTCGCCGTTCACCTCATTCCGACGGAGCCGTGATACTTGCTTCGAGCAGGCCGAAGAAGCGAGCCGGTAGGCGAGTGTTCAAGGAGACTCGCCACCCGGTCTACCGCGGCGTGAGGCTCAGGAACAATAACAAGTGGGTGTGCGAGGTCAGGGAGCCGAACAAAAAGACCAGAATTTGGCTCGGGACGTACCCGACTGTTGAGATGGCCGCTCGGGCACACGATGTGGCGGCATTGGCCCTTAGGGGGAAGCAGGCATGCCTCAATTTCGCTGATTCCGCGTGGCGCTTGCCCGTTCCGGCTTCCAAAGACCAGCTCGACATTCGCAGGGCCGCCGCCGAGGCTGCTGAGACATTTCGACCTGAGGAATTCGGCGGCTATCAACTGGGCAGACTATCAGGTGGAAAGCGAGTCAAATTTAAGCTTGTGGAGCTTCTGAGTGAACTCGTGTCCGTCATTAAGATGGGACAGGTGTCCAGCTTGCTTTTAAAATTCGCTGCATACAAAGATCTTGGAAAAGATCTTGGATTTAGTACGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0001558 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009889 GO:0009987 GO:0010035 GO:0010371 GO:0010468 GO:0010556 GO:0010565 GO:0010817 GO:0016143 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0019748 GO:0019757 GO:0019760 GO:0022603 GO:0022604 GO:0031323 GO:0031326 GO:0032350 GO:0040008 GO:0040034 GO:0042221 GO:0043436 GO:0043455 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0046885 GO:0046890 GO:0048506 GO:0048509 GO:0048510 GO:0048638 GO:0050789 GO:0050793 GO:0050794 GO:0050826 GO:0050896 GO:0051128 GO:0051171 GO:0051252 GO:0051510 GO:0060255 GO:0062012 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

215

Amino Acids

23.88

Weight (kDa)

10.07

Isoelectric Point (pI)

49.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	69 - 119	1.7e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000958)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12610 AT1G63030 AT1G63030
fragaria_vesca	FvH4_5g01440
malus_domestica	MD04G1067800.v1.1 MD04G1067900.v1.1 MD06G1072300.v1.1
prunus_persica	Prupe.5G089900_v2.0.a1 Prupe.5G090000_v2.0.a1 Prupe.5G090100_v2.0.a1 Prupe.5G090200_v2.0.a1 Prupe.5G090500_v2.0.a1
pyrus_communis	pycom04g06140 pycom06g07110 pycom06g07120
rosa_chinensis	RchiOBHm_Chr7g0199251 RchiOBHm_Chr7g0199301 RchiOBHm_Chr7g0199331 RchiOBHm_Chr7g0199351 RchiOBHm_Chr7g0199381
rosa_laevigata	RLG00000002739 RLG00000002740 RLG00000003796 RLG00000003799 RLG00000003801
rosa_multiflora	Rmu_co8046292.1_g000001 Rmu_co8280319.1_g000001 Rmu_sc0000855.1_g000009 Rmu_sc0000950.1_g000001 Rmu_sc0000950.1_g000005 Rmu_sc0007820.1_g000002 Rmu_sc0010720.1_g000001 Rmu_sc0039534.1_g000001
rosa_roxburghii	Rroxscaffold_3G00256750 Rroxscaffold_3G00256770 Rroxscaffold_3G00256870 Rroxscaffold_5G00359530
rosa_rugosa	Rorug07G0053500 Rorug07G0053500 Rorug07G0053500 Rorug07G0053800
rosa_samantha	Rh4BG264100 Rh7AG177700 Rh7AG177900 Rh7AG178000 Rh7AG178100 Rh7AG178600 Rh7BG181300 Rh7BG181400 Rh7BG181600 Rh7BG181900 Rh7BG182100 Rh7CG186800 Rh7CG187000 Rh7CG187200 Rh7CG187400 Rh7DG180800 Rh7DG181700
rosa_wichuraiana	Rw7G015620 Rw7G015630 Rw7G015650 Rw7G015670 Rw7G015680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	101
AccB7I	CCANNNNNTGG	1 cut(s)	285
AccBSI	CCGCTC	1 cut(s)	320
AccI	GTMKAC	1 cut(s)	210
AccII	CGCG	2 cut(s)	216, 389
AciI	CCGC	8 cut(s)	214, 216, 318, 338, 387, 441, 444, 483
AcoI	YGGCCR	1 cut(s)	315
AcsI	RAATTY	4 cut(s)	282, 476, 524, 599
AdeI	CACNNNGTG	1 cut(s)	334
AfaI	GTAC	2 cut(s)	299, 643
AfiI	CCNNNNNNNGG	2 cut(s)	285, 354
AgsI	TTSAA	1 cut(s)	190
AluBI	AGCT	6 cut(s)	9, 22, 424, 532, 541, 588
AluI	AGCT	6 cut(s)	9, 22, 424, 532, 541, 588
Alw26I	GTCTC	3 cut(s)	61, 188, 452
Ama87I	CYCGRG	3 cut(s)	74, 290, 321
AoxI	GGCC	4 cut(s)	158, 315, 345, 438
ApeKI	GCWGC	2 cut(s)	452, 605
ApoI	RAATTY	4 cut(s)	282, 476, 524, 599
AspLEI	GCGC	1 cut(s)	396
AspS9I	GGNCC	2 cut(s)	346, 438
AsuC2I	CCSGG	1 cut(s)	206
AsuHPI	GGTGA	1 cut(s)	111
AvaI	CYCGRG	3 cut(s)	74, 290, 321
AxyI	CCTNAGG	2 cut(s)	350, 471
BaeGI	GKGCMC	1 cut(s)	328
BauI	CACGAG	2 cut(s)	97, 554
BbsI	GAAGAC	1 cut(s)	75
BbvI	GCAGC	2 cut(s)	439, 592
BccI	CCATC	3 cut(s)	71, 307, 565
BceAI	ACGGC	2 cut(s)	99, 122
BcnI	CCSGG	1 cut(s)	206
BcoDI	GTCTC	3 cut(s)	61, 188, 452
BfoI	RGCGCY	1 cut(s)	397
BglI	GCCNNNNNGGC	2 cut(s)	323, 449
BglII	AGATCT	2 cut(s)	616, 628
BisI	GCNGC	8 cut(s)	217, 318, 339, 441, 444, 453, 484, 606
BlsI	GCNGC	8 cut(s)	218, 319, 340, 442, 445, 454, 485, 607
Bme1390I	CCNGG	1 cut(s)	206
BmeT110I	CYCGRG	3 cut(s)	74, 290, 321
BmgT120I	GGNCC	2 cut(s)	346, 438
BmiI	GGNNCC	2 cut(s)	136, 264
BmrFI	CCNGG	1 cut(s)	206
BmrI	ACTGGG	1 cut(s)	503
BmuI	ACTGGG	1 cut(s)	503
BoxI	GACNNNNGTC	1 cut(s)	580
BpiI	GAAGAC	1 cut(s)	75
Bpu10I	CCTNAGC	1 cut(s)	227
BpuMI	CCSGG	1 cut(s)	206
BsaAI	YACGTR	1 cut(s)	645
BsaJI	CCNNGG	2 cut(s)	214, 447
Bsc4I	CCNNNNNNNGG	2 cut(s)	285, 354
Bse118I	RCCGGY	1 cut(s)	173
Bse1I	ACTGG	1 cut(s)	498
Bse21I	CCTNAGG	2 cut(s)	350, 471
BseDI	CCNNGG	2 cut(s)	214, 447
BseLI	CCNNNNNNNGG	2 cut(s)	285, 354
BseMII	CTCAG	5 cut(s)	39, 241, 447, 462, 536
BseNI	ACTGG	1 cut(s)	498
BseRI	GAGGAG	1 cut(s)	49
BseSI	GKGCMC	1 cut(s)	328
BseXI	GCAGC	2 cut(s)	439, 592
Bsh1236I	CGCG	2 cut(s)	216, 389
BshFI	GGCC	4 cut(s)	160, 317, 347, 440
BsiHKCI	CYCGRG	3 cut(s)	74, 290, 321
BsiSI	CCGG	3 cut(s)	174, 206, 407
BslFI	GGGAC	2 cut(s)	307, 588
BslI	CCNNNNNNNGG	2 cut(s)	285, 354
BsmAI	GTCTC	3 cut(s)	61, 188, 452
BsmFI	GGGAC	2 cut(s)	307, 588
BsnI	GGCC	4 cut(s)	160, 317, 347, 440
BsoBI	CYCGRG	3 cut(s)	74, 290, 321
Bsp1286I	GDGCHC	1 cut(s)	328
Bsp143I	GATC	2 cut(s)	616, 628
BspACI	CCGC	8 cut(s)	214, 216, 318, 338, 387, 441, 444, 483
BspANI	GGCC	4 cut(s)	160, 317, 347, 440
BspCNI	CTCAG	5 cut(s)	38, 240, 448, 463, 537
BspFNI	CGCG	2 cut(s)	216, 389
BspLI	GGNNCC	2 cut(s)	136, 264
BsrBI	CCGCTC	1 cut(s)	320
BsrFI	RCCGGY	1 cut(s)	173
BsrI	ACTGG	1 cut(s)	498
BssAI	RCCGGY	1 cut(s)	173
BssECI	CCNNGG	2 cut(s)	214, 447
BssMI	GATC	2 cut(s)	616, 628
BssSI	CACGAG	2 cut(s)	97, 554
Bst2BI	CACGAG	2 cut(s)	97, 554
Bst4CI	ACNGT	1 cut(s)	307
BstBAI	YACGTR	1 cut(s)	645
BstC8I	GCNNGC	6 cut(s)	158, 171, 363, 367, 398, 590
BstDEI	CTNAG	6 cut(s)	25, 227, 350, 456, 471, 545
BstDSI	CCRYGG	1 cut(s)	214
BstFNI	CGCG	2 cut(s)	216, 389
BstH2I	RGCGCY	1 cut(s)	397
BstHHI	GCGC	1 cut(s)	396
BstKTI	GATC	2 cut(s)	619, 631
BstMAI	GTCTC	3 cut(s)	61, 188, 452
BstMBI	GATC	2 cut(s)	616, 628
BstMWI	GCNNNNNNNGC	7 cut(s)	166, 323, 344, 386, 449, 452, 538
BstNSI	RCATGY	1 cut(s)	369
BstPAI	GACNNNNGTC	1 cut(s)	580
BstSCI	CCNGG	1 cut(s)	204
BstSLI	GKGCMC	1 cut(s)	328
BstSNI	TACGTA	1 cut(s)	645
BstUI	CGCG	2 cut(s)	216, 389
BstV1I	GCAGC	2 cut(s)	439, 592
BstV2I	GAAGAC	1 cut(s)	75
BstX2I	RGATCY	2 cut(s)	616, 628
BstYI	RGATCY	2 cut(s)	616, 628
Bsu36I	CCTNAGG	2 cut(s)	350, 471
BsuRI	GGCC	4 cut(s)	160, 317, 347, 440
BtgI	CCRYGG	1 cut(s)	214
Cac8I	GCNNGC	6 cut(s)	158, 171, 363, 367, 398, 590
CfoI	GCGC	1 cut(s)	396
Cfr10I	RCCGGY	1 cut(s)	173
Cfr13I	GGNCC	2 cut(s)	346, 438
Cfr42I	CCGCGG	1 cut(s)	217
CseI	GACGC	1 cut(s)	91
Csp6I	GTAC	2 cut(s)	298, 642
CviAII	CATG	1 cut(s)	366
CviQI	GTAC	2 cut(s)	298, 642
DdeI	CTNAG	6 cut(s)	25, 227, 350, 456, 471, 545
DpnI	GATC	2 cut(s)	618, 630
DpnII	GATC	2 cut(s)	616, 628
DraI	TTTAAA	1 cut(s)	597
DraIII	CACNNNGTG	1 cut(s)	334
DrdI	GACNNNNNNGTC	1 cut(s)	101
DseDI	GACNNNNNNGTC	1 cut(s)	101
EaeI	YGGCCR	1 cut(s)	315
Eco105I	TACGTA	1 cut(s)	645
Eco81I	CCTNAGG	2 cut(s)	350, 471
Eco88I	CYCGRG	3 cut(s)	74, 290, 321
EcoRI	GAATTC	1 cut(s)	476
FaeI	CATG	1 cut(s)	369
FaiI	YATR	2 cut(s)	367, 610
FaqI	GGGAC	2 cut(s)	307, 588
FatI	CATG	1 cut(s)	365
FblI	GTMKAC	1 cut(s)	210
Fnu4HI	GCNGC	8 cut(s)	217, 318, 339, 441, 444, 453, 484, 606
Fsp4HI	GCNGC	8 cut(s)	217, 318, 339, 441, 444, 453, 484, 606
GlaI	GCGC	1 cut(s)	395
GluI	GCNGC	8 cut(s)	217, 318, 339, 441, 444, 453, 484, 606
HaeII	RGCGCY	1 cut(s)	397
HaeIII	GGCC	4 cut(s)	160, 317, 347, 440
HapII	CCGG	3 cut(s)	174, 206, 407
HgaI	GACGC	1 cut(s)	91
HhaI	GCGC	1 cut(s)	396
Hin1II	CATG	1 cut(s)	369
Hin6I	GCGC	1 cut(s)	394
HinP1I	GCGC	1 cut(s)	394
HindIII	AAGCTT	1 cut(s)	530
HinfI	GANTC	7 cut(s)	29, 50, 77, 109, 196, 383, 519
HpaII	CCGG	3 cut(s)	174, 206, 407
HphI	GGTGA	1 cut(s)	111
Hpy166II	GTNNAC	3 cut(s)	119, 211, 551
Hpy188I	TCNGA	4 cut(s)	28, 94, 130, 546
Hpy188III	TCNNGA	3 cut(s)	106, 229, 292
Hpy8I	GTNNAC	3 cut(s)	119, 211, 551
Hpy99I	CGWCG	1 cut(s)	134
HpyCH4III	ACNGT	1 cut(s)	307
HpyCH4IV	ACGT	2 cut(s)	296, 644
HpyCH4V	TGCA	1 cut(s)	608
HpyF10VI	GCNNNNNNNGC	7 cut(s)	166, 323, 344, 386, 449, 452, 538
HpyF3I	CTNAG	6 cut(s)	25, 227, 350, 456, 471, 545
HpySE526I	ACGT	2 cut(s)	296, 644
Hsp92II	CATG	1 cut(s)	369
HspAI	GCGC	1 cut(s)	394
KspI	CCGCGG	1 cut(s)	217
Kzo9I	GATC	2 cut(s)	616, 628
LmnI	GCTCC	4 cut(s)	14, 134, 262, 538
Lsp1109I	GCAGC	2 cut(s)	439, 592
MaeII	ACGT	2 cut(s)	296, 644
MaeIII	GTNAC	1 cut(s)	103
MalI	GATC	2 cut(s)	618, 630
MbiI	CCGCTC	1 cut(s)	320
MboI	GATC	2 cut(s)	616, 628
MboII	GAAGA	2 cut(s)	75, 175
MflI	RGATCY	2 cut(s)	616, 628
MhlI	GDGCHC	1 cut(s)	328
MluCI	AATT	6 cut(s)	13, 282, 373, 476, 524, 599
MlyI	GAGTC	5 cut(s)	23, 86, 103, 190, 528
MmeI	TCCRAC	2 cut(s)	57, 153
MnlI	CCTC	8 cut(s)	56, 70, 132, 216, 247, 380, 442, 466
MseI	TTAA	3 cut(s)	528, 567, 596
MslI	CAYNNNNRTG	1 cut(s)	569
MspA1I	CMGCKG	1 cut(s)	216
MspI	CCGG	3 cut(s)	174, 206, 407
MspR9I	CCNGG	1 cut(s)	206
MvnI	CGCG	2 cut(s)	216, 389
MwoI	GCNNNNNNNGC	7 cut(s)	166, 323, 344, 386, 449, 452, 538
NciI	CCSGG	1 cut(s)	206
NdeII	GATC	2 cut(s)	616, 628
NlaIII	CATG	1 cut(s)	369
NlaIV	GGNNCC	2 cut(s)	136, 264
NmeAIII	GCCGAG	1 cut(s)	472
NmuCI	GTSAC	1 cut(s)	103
NspI	RCATGY	1 cut(s)	369
PaeI	GCATGC	1 cut(s)	369
PcsI	WCGNNNNNNNCGW	3 cut(s)	72, 104, 158
PfeI	GAWTC	2 cut(s)	50, 383
PflMI	CCANNNNNTGG	1 cut(s)	285
PkrI	GCNGC	8 cut(s)	218, 319, 340, 442, 445, 454, 485, 607
PleI	GAGTC	5 cut(s)	23, 85, 103, 190, 527
PpsI	GAGTC	5 cut(s)	23, 85, 103, 190, 527
Ppu21I	YACGTR	1 cut(s)	645
PshAI	GACNNNNGTC	1 cut(s)	580
PspN4I	GGNNCC	2 cut(s)	136, 264
PspPI	GGNCC	2 cut(s)	346, 438
PsuI	RGATCY	2 cut(s)	616, 628
RsaI	GTAC	2 cut(s)	299, 643
RsaNI	GTAC	2 cut(s)	298, 642
RseI	CAYNNNNRTG	1 cut(s)	569
SacII	CCGCGG	1 cut(s)	217
SaqAI	TTAA	3 cut(s)	528, 567, 596
SatI	GCNGC	8 cut(s)	217, 318, 339, 441, 444, 453, 484, 606
Sau3AI	GATC	2 cut(s)	616, 628
Sau96I	GGNCC	2 cut(s)	346, 438
SchI	GAGTC	5 cut(s)	23, 86, 103, 190, 528
ScrFI	CCNGG	1 cut(s)	206
SduI	GDGCHC	1 cut(s)	328
Sfr303I	CCGCGG	1 cut(s)	217
SgrBI	CCGCGG	1 cut(s)	217
SmiMI	CAYNNNNRTG	1 cut(s)	569
SnaBI	TACGTA	1 cut(s)	645
SphI	GCATGC	1 cut(s)	369
Sse9I	AATT	6 cut(s)	13, 282, 373, 476, 524, 599
SsiI	CCGC	8 cut(s)	214, 216, 318, 338, 387, 441, 444, 483
StyD4I	CCNGG	1 cut(s)	204
TaaI	ACNGT	1 cut(s)	307
TaiI	ACGT	2 cut(s)	299, 647
TaqI	TCGA	5 cut(s)	48, 66, 152, 426, 466
TasI	AATT	6 cut(s)	13, 282, 373, 476, 524, 599
TauI	GCSGC	6 cut(s)	219, 320, 341, 443, 446, 486
TfiI	GAWTC	2 cut(s)	50, 383
Tru1I	TTAA	3 cut(s)	528, 567, 596
Tru9I	TTAA	3 cut(s)	528, 567, 596
TseFI	GTSAC	1 cut(s)	103
TseI	GCWGC	2 cut(s)	452, 605
Tsp45I	GTSAC	1 cut(s)	103
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	2 cut(s)	147, 550
Van91I	CCANNNNNTGG	1 cut(s)	285
XapI	RAATTY	4 cut(s)	282, 476, 524, 599
XceI	RCATGY	1 cut(s)	369
XmiI	GTMKAC	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.