Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0000958

Physical Location & Seq

Genomic Coordinates Reverse (-)

11602028 .. 11602735

Gene Structure 708 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g07120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGAATACGATCTTCAGTCAAATCTCCGATTCCTCCGAAAAGCCCGAATCGAGCTCCGACGACACAGGCATCTTGACTCGAAGCCAGCTGGCTTCGTTCTCCGACGAGGAGGTCATTTTGGCGGCCAGCAGGCCGAAGAAGCGAGCGGGGAGGAGAGTTTTCAAGGAGACGAGGCACCCGGTTTACAGGGGAGTGAGGAGGAGGAACAACAACAAGTGGGTGTGCGAAATGAGAGAACCAAACAAGAAGAAGTCGAGGATATGGCTCGGAACTTATCCGACGGCCGAGATGGCAGCTCGGGCGCATGACGTGGCGGCATTGGCCTTTAGAGGGAAGCTTGCCTGCCTCAATTTTGCAGACTCCGTATGGCGCCTGCCTGTTCCGGCATCCACTGATTCAGTGGATATCAGGCGGGCAGCAGCGGAGGCTGCAGAGACGTTCCGGCCAGAGGAGTTTGGCGGAGTGTCGGAAGGCGGCGATGATGAGAAGGAGAGCAAGAAAATGGAGGGGGAGAAGGATTGTGGAGGCGCGGAGGAAAGTGGAATCTTGCTTTACTTGGATGAGGAGGAAATGTTCGACATGCCGAGGTTGCTGGATAGTATGGCCGAAGGGCTTCTGCTCTCTCCACCTCACTCTTCAGGTGGTTGCATGAACTGGGATGACATGGAAAGCAACGATGACGTCAGTCTGTGGAGCTTCTCGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0001558 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009889 GO:0009987 GO:0010035 GO:0010371 GO:0010468 GO:0010556 GO:0010565 GO:0010817 GO:0016143 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0019748 GO:0019757 GO:0019760 GO:0022603 GO:0022604 GO:0031323 GO:0031326 GO:0032350 GO:0040008 GO:0040034 GO:0042221 GO:0043436 GO:0043455 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0046885 GO:0046890 GO:0048506 GO:0048509 GO:0048510 GO:0048638 GO:0050789 GO:0050793 GO:0050794 GO:0050826 GO:0050896 GO:0051128 GO:0051171 GO:0051252 GO:0051510 GO:0060255 GO:0062012 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

236

Amino Acids

26.21

Weight (kDa)

4.99

Isoelectric Point (pI)

64.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	60 - 111	1.1e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000958)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12610 AT1G63030 AT1G63030
fragaria_vesca	FvH4_5g01440
malus_domestica	MD04G1067800.v1.1 MD04G1067900.v1.1 MD06G1072300.v1.1
prunus_persica	Prupe.5G089900_v2.0.a1 Prupe.5G090000_v2.0.a1 Prupe.5G090100_v2.0.a1 Prupe.5G090200_v2.0.a1 Prupe.5G090500_v2.0.a1
pyrus_communis	pycom04g06140 pycom06g07110 pycom06g07120
rosa_chinensis	RchiOBHm_Chr7g0199251 RchiOBHm_Chr7g0199301 RchiOBHm_Chr7g0199331 RchiOBHm_Chr7g0199351 RchiOBHm_Chr7g0199381
rosa_laevigata	RLG00000002739 RLG00000002740 RLG00000003796 RLG00000003799 RLG00000003801
rosa_multiflora	Rmu_co8046292.1_g000001 Rmu_co8280319.1_g000001 Rmu_sc0000855.1_g000009 Rmu_sc0000950.1_g000001 Rmu_sc0000950.1_g000005 Rmu_sc0007820.1_g000002 Rmu_sc0010720.1_g000001 Rmu_sc0039534.1_g000001
rosa_roxburghii	Rroxscaffold_3G00256750 Rroxscaffold_3G00256770 Rroxscaffold_3G00256870 Rroxscaffold_5G00359530
rosa_rugosa	Rorug07G0053500 Rorug07G0053500 Rorug07G0053500 Rorug07G0053800
rosa_samantha	Rh4BG264100 Rh7AG177700 Rh7AG177900 Rh7AG178000 Rh7AG178100 Rh7AG178600 Rh7BG181300 Rh7BG181400 Rh7BG181600 Rh7BG181900 Rh7BG182100 Rh7CG186800 Rh7CG187000 Rh7CG187200 Rh7CG187400 Rh7DG180800 Rh7DG181700
rosa_wichuraiana	Rw7G015620 Rw7G015630 Rw7G015650 Rw7G015670 Rw7G015680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	110
AatII	GACGTC	1 cut(s)	684
AccB1I	GGYRCC	2 cut(s)	174, 369
AccBSI	CCGCTC	1 cut(s)	146
AccII	CGCG	1 cut(s)	530
AciI	CCGC	8 cut(s)	122, 146, 314, 412, 422, 459, 474, 530
AcoI	YGGCCR	4 cut(s)	123, 282, 443, 603
AcuI	CTGAAG	1 cut(s)	621
AcyI	GRCGYC	2 cut(s)	370, 681
AfiI	CCNNNNNNNGG	2 cut(s)	330, 448
AgsI	TTSAA	1 cut(s)	163
AjiI	CACGTC	1 cut(s)	310
AloI	GAACNNNNNNTCC	2 cut(s)	557, 589
AluBI	AGCT	5 cut(s)	54, 88, 296, 337, 696
AluI	AGCT	5 cut(s)	54, 88, 296, 337, 696
Alw21I	GWGCWC	1 cut(s)	56
Alw26I	GTCTC	2 cut(s)	161, 428
Ama87I	CYCGRG	1 cut(s)	297
AoxI	GGCC	6 cut(s)	123, 131, 282, 321, 443, 603
ApeKI	GCWGC	4 cut(s)	293, 416, 419, 428
Asp700I	GAANNNNTTC	1 cut(s)	612
AspLEI	GCGC	3 cut(s)	304, 372, 530
AsuC2I	CCSGG	1 cut(s)	179
AvaI	CYCGRG	1 cut(s)	297
BanI	GGYRCC	2 cut(s)	174, 369
BanII	GRGCYC	1 cut(s)	56
Bbv12I	GWGCWC	1 cut(s)	56
BbvI	GCAGC	4 cut(s)	305, 415, 428, 431
BccI	CCATC	1 cut(s)	283
BceAI	ACGGC	1 cut(s)	297
BcnI	CCSGG	1 cut(s)	179
BcoDI	GTCTC	2 cut(s)	161, 428
BfmI	CTRYAG	1 cut(s)	429
BfoI	RGCGCY	1 cut(s)	373
BglI	GCCNNNNNGGC	1 cut(s)	290
BisI	GCNGC	7 cut(s)	123, 294, 315, 417, 420, 429, 475
BlsI	GCNGC	7 cut(s)	124, 295, 316, 418, 421, 430, 476
Bme1390I	CCNGG	1 cut(s)	179
BmeT110I	CYCGRG	1 cut(s)	297
BmgBI	CACGTC	1 cut(s)	310
BmiI	GGNNCC	2 cut(s)	176, 371
BmrFI	CCNGG	1 cut(s)	179
BmrI	ACTGGG	1 cut(s)	664
BmsI	GCATC	2 cut(s)	78, 395
BmuI	ACTGGG	1 cut(s)	664
BoxI	GACNNNNGTC	1 cut(s)	684
BpuMI	CCSGG	1 cut(s)	179
BsaHI	GRCGYC	2 cut(s)	370, 681
BsaJI	CCNNGG	1 cut(s)	584
BsaXI	ACNNNNNCTCC	2 cut(s)	557, 587
Bsc4I	CCNNNNNNNGG	2 cut(s)	330, 448
Bse1I	ACTGG	1 cut(s)	659
BseDI	CCNNGG	1 cut(s)	584
BseGI	GGATG	3 cut(s)	386, 565, 664
BseLI	CCNNNNNNNGG	2 cut(s)	330, 448
BseNI	ACTGG	1 cut(s)	659
BseRI	GAGGAG	6 cut(s)	122, 166, 211, 214, 464, 578
BseX3I	CGGCCG	1 cut(s)	282
BseXI	GCAGC	4 cut(s)	305, 415, 428, 431
Bsh1236I	CGCG	1 cut(s)	530
Bsh1285I	CGRYCG	1 cut(s)	285
BshFI	GGCC	6 cut(s)	125, 133, 284, 323, 445, 605
BshNI	GGYRCC	2 cut(s)	174, 369
BsiEI	CGRYCG	1 cut(s)	285
BsiHKAI	GWGCWC	1 cut(s)	56
BsiHKCI	CYCGRG	1 cut(s)	297
BsiSI	CCGG	3 cut(s)	179, 383, 442
BslI	CCNNNNNNNGG	2 cut(s)	330, 448
BsmAI	GTCTC	2 cut(s)	161, 428
BsmBI	CGTCTC	2 cut(s)	161, 428
BsnI	GGCC	6 cut(s)	125, 133, 284, 323, 445, 605
BsoBI	CYCGRG	1 cut(s)	297
Bsp1286I	GDGCHC	1 cut(s)	56
Bsp143I	GATC	1 cut(s)	9
BspACI	CCGC	8 cut(s)	122, 146, 314, 412, 422, 459, 474, 530
BspANI	GGCC	6 cut(s)	125, 133, 284, 323, 445, 605
BspFNI	CGCG	1 cut(s)	530
BspLI	GGNNCC	2 cut(s)	176, 371
BspMAI	CTGCAG	1 cut(s)	433
BspT107I	GGYRCC	2 cut(s)	174, 369
BsrBI	CCGCTC	1 cut(s)	146
BsrI	ACTGG	1 cut(s)	659
BssECI	CCNNGG	1 cut(s)	584
BssMI	GATC	1 cut(s)	9
BssNI	GRCGYC	2 cut(s)	370, 681
Bst6I	CTCTTC	1 cut(s)	640
BstACI	GRCGYC	2 cut(s)	370, 681
BstC8I	GCNNGC	9 cut(s)	86, 90, 127, 131, 144, 339, 343, 374, 414
BstF5I	GGATG	3 cut(s)	386, 565, 664
BstFNI	CGCG	1 cut(s)	530
BstH2I	RGCGCY	1 cut(s)	373
BstHHI	GCGC	3 cut(s)	304, 372, 530
BstKTI	GATC	1 cut(s)	12
BstMAI	GTCTC	2 cut(s)	161, 428
BstMBI	GATC	1 cut(s)	9
BstMCI	CGRYCG	1 cut(s)	285
BstMWI	GCNNNNNNNGC	7 cut(s)	139, 290, 299, 320, 425, 428, 589
BstNSI	RCATGY	1 cut(s)	583
BstPAI	GACNNNNGTC	1 cut(s)	684
BstSCI	CCNGG	1 cut(s)	177
BstSFI	CTRYAG	1 cut(s)	429
BstUI	CGCG	1 cut(s)	530
BstV1I	GCAGC	4 cut(s)	305, 415, 428, 431
BstZI	CGGCCG	1 cut(s)	282
BsuRI	GGCC	6 cut(s)	125, 133, 284, 323, 445, 605
BtgZI	GCGATG	1 cut(s)	492
BtrI	CACGTC	1 cut(s)	310
BtsCI	GGATG	3 cut(s)	386, 565, 664
BtsIMutI	CAGTG	2 cut(s)	390, 405
Cac8I	GCNNGC	9 cut(s)	86, 90, 127, 131, 144, 339, 343, 374, 414
CfoI	GCGC	3 cut(s)	304, 372, 530
CviAII	CATG	4 cut(s)	305, 580, 649, 664
DinI	GGCGCC	1 cut(s)	371
DpnI	GATC	1 cut(s)	11
DpnII	GATC	1 cut(s)	9
DrdI	GACNNNNNNGTC	1 cut(s)	110
DseDI	GACNNNNNNGTC	1 cut(s)	110
EaeI	YGGCCR	4 cut(s)	123, 282, 443, 603
EagI	CGGCCG	1 cut(s)	282
Eam1104I	CTCTTC	1 cut(s)	640
EarI	CTCTTC	1 cut(s)	640
EciI	GGCGGA	1 cut(s)	474
Ecl136II	GAGCTC	1 cut(s)	54
EclXI	CGGCCG	1 cut(s)	282
Eco24I	GRGCYC	1 cut(s)	56
Eco32I	GATATC	1 cut(s)	406
Eco52I	CGGCCG	1 cut(s)	282
Eco53kI	GAGCTC	1 cut(s)	54
Eco57I	CTGAAG	1 cut(s)	621
Eco88I	CYCGRG	1 cut(s)	297
EcoICRI	GAGCTC	1 cut(s)	54
EcoRV	GATATC	1 cut(s)	406
EcoT38I	GRGCYC	1 cut(s)	56
EgeI	GGCGCC	1 cut(s)	371
EheI	GGCGCC	1 cut(s)	371
Esp3I	CGTCTC	2 cut(s)	161, 428
FaeI	CATG	4 cut(s)	308, 583, 652, 667
FaiI	YATR	7 cut(s)	262, 306, 367, 581, 602, 650, 665
FatI	CATG	4 cut(s)	304, 579, 648, 663
FauI	CCCGC	2 cut(s)	139, 405
Fnu4HI	GCNGC	7 cut(s)	123, 294, 315, 417, 420, 429, 475
FokI	GGATG	3 cut(s)	373, 572, 671
FriOI	GRGCYC	1 cut(s)	56
Fsp4HI	GCNGC	7 cut(s)	123, 294, 315, 417, 420, 429, 475
GlaI	GCGC	3 cut(s)	303, 371, 529
GluI	GCNGC	7 cut(s)	123, 294, 315, 417, 420, 429, 475
HaeII	RGCGCY	1 cut(s)	373
HaeIII	GGCC	6 cut(s)	125, 133, 284, 323, 445, 605
HapII	CCGG	3 cut(s)	179, 383, 442
HhaI	GCGC	3 cut(s)	304, 372, 530
Hin1I	GRCGYC	2 cut(s)	370, 681
Hin1II	CATG	4 cut(s)	308, 583, 652, 667
Hin6I	GCGC	3 cut(s)	302, 370, 528
HinP1I	GCGC	3 cut(s)	302, 370, 528
HindIII	AAGCTT	1 cut(s)	335
HinfI	GANTC	6 cut(s)	29, 47, 76, 359, 395, 543
HpaII	CCGG	3 cut(s)	179, 383, 442
Hpy166II	GTNNAC	1 cut(s)	184
Hpy188I	TCNGA	7 cut(s)	28, 37, 58, 103, 269, 279, 469
Hpy188III	TCNNGA	2 cut(s)	73, 700
Hpy8I	GTNNAC	1 cut(s)	184
Hpy99I	CGWCG	3 cut(s)	62, 107, 283
HpyAV	CCTTC	4 cut(s)	464, 481, 508, 602
HpyCH4IV	ACGT	3 cut(s)	309, 437, 681
HpyCH4V	TGCA	3 cut(s)	356, 431, 648
HpyF10VI	GCNNNNNNNGC	7 cut(s)	139, 290, 299, 320, 425, 428, 589
HpySE526I	ACGT	3 cut(s)	309, 437, 681
Hsp92I	GRCGYC	2 cut(s)	370, 681
Hsp92II	CATG	4 cut(s)	308, 583, 652, 667
HspAI	GCGC	3 cut(s)	302, 370, 528
KasI	GGCGCC	1 cut(s)	369
Kzo9I	GATC	1 cut(s)	9
LmnI	GCTCC	2 cut(s)	59, 693
Lsp1109I	GCAGC	4 cut(s)	305, 415, 428, 431
LweI	GCATC	2 cut(s)	78, 395
MaeII	ACGT	3 cut(s)	309, 437, 681
MalI	GATC	1 cut(s)	11
MbiI	CCGCTC	1 cut(s)	146
MboI	GATC	1 cut(s)	9
MboII	GAAGA	4 cut(s)	4, 148, 259, 627
MhlI	GDGCHC	1 cut(s)	56
MluCI	AATT	2 cut(s)	349, 703
Mly113I	GGCGCC	1 cut(s)	370
MlyI	GAGTC	2 cut(s)	70, 353
MmeI	TCCRAC	4 cut(s)	81, 126, 302, 447
MroXI	GAANNNNTTC	1 cut(s)	612
MspA1I	CMGCKG	2 cut(s)	88, 422
MspI	CCGG	3 cut(s)	179, 383, 442
MspR9I	CCNGG	1 cut(s)	179
MvnI	CGCG	1 cut(s)	530
MwoI	GCNNNNNNNGC	7 cut(s)	139, 290, 299, 320, 425, 428, 589
NarI	GGCGCC	1 cut(s)	370
NciI	CCSGG	1 cut(s)	179
NdeII	GATC	1 cut(s)	9
NlaIII	CATG	4 cut(s)	308, 583, 652, 667
NlaIV	GGNNCC	2 cut(s)	176, 371
NmeAIII	GCCGAG	2 cut(s)	310, 609
NspI	RCATGY	1 cut(s)	583
PdmI	GAANNNNTTC	1 cut(s)	612
PfeI	GAWTC	4 cut(s)	29, 47, 395, 543
PkrI	GCNGC	7 cut(s)	124, 295, 316, 418, 421, 430, 476
PleI	GAGTC	2 cut(s)	70, 353
PluTI	GGCGCC	1 cut(s)	373
PpsI	GAGTC	2 cut(s)	70, 353
PshAI	GACNNNNGTC	1 cut(s)	684
Psp124BI	GAGCTC	1 cut(s)	56
PspN4I	GGNNCC	2 cut(s)	176, 371
PstI	CTGCAG	1 cut(s)	433
PvuII	CAGCTG	1 cut(s)	88
SacI	GAGCTC	1 cut(s)	56
SatI	GCNGC	7 cut(s)	123, 294, 315, 417, 420, 429, 475
Sau3AI	GATC	1 cut(s)	9
SchI	GAGTC	2 cut(s)	70, 353
ScrFI	CCNGG	1 cut(s)	179
SduI	GDGCHC	1 cut(s)	56
SfaNI	GCATC	2 cut(s)	78, 395
SfcI	CTRYAG	1 cut(s)	429
SfoI	GGCGCC	1 cut(s)	371
Sse9I	AATT	2 cut(s)	349, 703
SsiI	CCGC	8 cut(s)	122, 146, 314, 412, 422, 459, 474, 530
SspDI	GGCGCC	1 cut(s)	369
SstI	GAGCTC	1 cut(s)	56
StyD4I	CCNGG	1 cut(s)	177
TaiI	ACGT	3 cut(s)	312, 440, 684
TaqI	TCGA	5 cut(s)	50, 79, 254, 576, 701
TasI	AATT	2 cut(s)	349, 703
TauI	GCSGC	3 cut(s)	125, 317, 477
TfiI	GAWTC	4 cut(s)	29, 47, 395, 543
TscAI	CASTG	2 cut(s)	397, 405
TseI	GCWGC	4 cut(s)	293, 416, 419, 428
TspDTI	ATGAA	2 cut(s)	17, 665
TspGWI	ACGGA	1 cut(s)	352
TspRI	CASTG	2 cut(s)	397, 405
XceI	RCATGY	1 cut(s)	583
XcmI	CCANNNNNNNNNTGG	1 cut(s)	397
XmnI	GAANNNNTTC	1 cut(s)	612
ZraI	GACGTC	1 cut(s)	682

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.