Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0000958

Physical Location & Seq

Genomic Coordinates Forward (+)

43783009 .. 43784111

Gene Structure 1103 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG264100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGAATAGCTCCAATTACCAGCTCTCAGACTCCAACCAGAAAAGCCTCGAATCAGTCTCCTCCATCGACAATTCCTTATCTGACACGAGCGTCAGGACTTGCCGTTCGCCTCAATATTCCGACGAAAAGGTGATACTAGCTTCGAGCAGGCCGAAGAAGCGAGCCGGTAGGCGACTGTTCAAGGAGACTCGCCACCCGGTTTACCGCGGCGTGAGGCGCAGGAACAATAACAAGTGGGTGTGCGAGGTCAGGGAGCCGAACAAAAAAACCAGAATTTGGCTCGGGACATACCCGACTGTTGAGATGGCCGCTCGGGCACATGATGTGGCGGCATTGGCCCTTAGGGGGAAGCAGGCATGCCTCAATTTCGCTGATTCCGTGTGGCGGTTGCCCATTCCGGCTTCTAAAGACCAGCTCGACATTCGCAGGGCCGCCGCCGAGGCTGCTGAGACATTTCGACCTGAGGAATTCGGCGGCGTCTCAAGCAGCTGCGACGACAAAGAGATGGAATATGAGGATGAGAAAATTGCGACGGACAACGAGAAGATCAAGAATGATGGCTTCTCCGAGGACGAGGAGAGGGAACAAGAGAATGAGAAGAAGAACGACGGCTATTACGAGGATGAAGAGGCGCACTTCGACATGCCGAGGTTGCTGACTAGCATGGCGGAGGGTCCACTACTCTCTCCGCCTCGTCATTACTTGGACAGTATGAACTGGGCAGACTATCAGGTGGAAAGCGAGTCAAATTTCAGCTTGTGGAGCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0001558 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009889 GO:0009987 GO:0010035 GO:0010371 GO:0010468 GO:0010556 GO:0010565 GO:0010817 GO:0016143 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0019748 GO:0019757 GO:0019760 GO:0022603 GO:0022604 GO:0031323 GO:0031326 GO:0032350 GO:0040008 GO:0040034 GO:0042221 GO:0043436 GO:0043455 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0046885 GO:0046890 GO:0048506 GO:0048509 GO:0048510 GO:0048638 GO:0050789 GO:0050793 GO:0050794 GO:0050826 GO:0050896 GO:0051128 GO:0051171 GO:0051252 GO:0051510 GO:0060255 GO:0062012 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

256

Amino Acids

29.47

Weight (kDa)

5.27

Isoelectric Point (pI)

57.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	66 - 116	5.8e-16	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000958)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12610 AT1G63030 AT1G63030
fragaria_vesca	FvH4_5g01440
malus_domestica	MD04G1067800.v1.1 MD04G1067900.v1.1 MD06G1072300.v1.1
prunus_persica	Prupe.5G089900_v2.0.a1 Prupe.5G090000_v2.0.a1 Prupe.5G090100_v2.0.a1 Prupe.5G090200_v2.0.a1 Prupe.5G090500_v2.0.a1
pyrus_communis	pycom04g06140 pycom06g07110 pycom06g07120
rosa_chinensis	RchiOBHm_Chr7g0199251 RchiOBHm_Chr7g0199301 RchiOBHm_Chr7g0199331 RchiOBHm_Chr7g0199351 RchiOBHm_Chr7g0199381
rosa_laevigata	RLG00000002739 RLG00000002740 RLG00000003796 RLG00000003799 RLG00000003801
rosa_multiflora	Rmu_co8046292.1_g000001 Rmu_co8280319.1_g000001 Rmu_sc0000855.1_g000009 Rmu_sc0000950.1_g000001 Rmu_sc0000950.1_g000005 Rmu_sc0007820.1_g000002 Rmu_sc0010720.1_g000001 Rmu_sc0039534.1_g000001
rosa_roxburghii	Rroxscaffold_3G00256750 Rroxscaffold_3G00256770 Rroxscaffold_3G00256870 Rroxscaffold_5G00359530
rosa_rugosa	Rorug07G0053500 Rorug07G0053500 Rorug07G0053500 Rorug07G0053800
rosa_samantha	Rh4BG264100 Rh7AG177700 Rh7AG177900 Rh7AG178000 Rh7AG178100 Rh7AG178600 Rh7BG181300 Rh7BG181400 Rh7BG181600 Rh7BG181900 Rh7BG182100 Rh7CG186800 Rh7CG187000 Rh7CG187200 Rh7CG187400 Rh7DG180800 Rh7DG181700
rosa_wichuraiana	Rw7G015620 Rw7G015630 Rw7G015650 Rw7G015670 Rw7G015680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	89
AccB7I	CCANNNNNTGG	1 cut(s)	276
AccBSI	CCGCTC	1 cut(s)	311
AccII	CGCG	1 cut(s)	207
AcoI	YGGCCR	1 cut(s)	306
AcsI	RAATTY	3 cut(s)	273, 467, 748
AcyI	GRCGYC	1 cut(s)	477
AfiI	CCNNNNNNNGG	3 cut(s)	276, 345, 384
AgsI	TTSAA	1 cut(s)	181
AloI	GAACNNNNNNTCC	2 cut(s)	88, 120
AluBI	AGCT	7 cut(s)	9, 22, 140, 415, 489, 756, 765
AluI	AGCT	7 cut(s)	9, 22, 140, 415, 489, 756, 765
Alw26I	GTCTC	4 cut(s)	61, 179, 443, 484
Ama87I	CYCGRG	2 cut(s)	281, 312
AoxI	GGCC	4 cut(s)	149, 306, 336, 429
ApeKI	GCWGC	3 cut(s)	443, 486, 489
ApoI	RAATTY	3 cut(s)	273, 467, 748
ArsI	GACNNNNNNTTYG	2 cut(s)	88, 120
AspLEI	GCGC	2 cut(s)	219, 634
AspS9I	GGNCC	3 cut(s)	337, 429, 674
AsuC2I	CCSGG	1 cut(s)	197
AsuHPI	GGTGA	1 cut(s)	142
AvaI	CYCGRG	2 cut(s)	281, 312
AvaII	GGWCC	1 cut(s)	674
AxyI	CCTNAGG	2 cut(s)	341, 462
BaeGI	GKGCMC	1 cut(s)	319
BauI	CACGAG	1 cut(s)	85
BbvI	GCAGC	3 cut(s)	430, 476, 498
BccI	CCATC	4 cut(s)	71, 298, 499, 551
BceAI	ACGGC	2 cut(s)	87, 625
BcnI	CCSGG	1 cut(s)	197
BcoDI	GTCTC	4 cut(s)	61, 179, 443, 484
BfaI	CTAG	2 cut(s)	137, 660
BglI	GCCNNNNNGGC	2 cut(s)	314, 440
BisI	GCNGC	9 cut(s)	208, 309, 330, 432, 435, 444, 475, 487, 490
BlsI	GCNGC	9 cut(s)	209, 310, 331, 433, 436, 445, 476, 488, 491
Bme1390I	CCNGG	1 cut(s)	197
Bme18I	GGWCC	1 cut(s)	674
BmeT110I	CYCGRG	2 cut(s)	281, 312
BmgT120I	GGNCC	3 cut(s)	337, 429, 674
BmiI	GGNNCC	2 cut(s)	255, 675
BmrFI	CCNGG	1 cut(s)	197
BmrI	ACTGGG	1 cut(s)	727
BmuI	ACTGGG	1 cut(s)	727
BpuEI	CTTGAG	1 cut(s)	466
BpuMI	CCSGG	1 cut(s)	197
BsaHI	GRCGYC	1 cut(s)	477
BsaJI	CCNNGG	4 cut(s)	205, 438, 567, 647
Bsc4I	CCNNNNNNNGG	3 cut(s)	276, 345, 384
Bse118I	RCCGGY	1 cut(s)	164
Bse1I	ACTGG	1 cut(s)	722
Bse21I	CCTNAGG	2 cut(s)	341, 462
BseDI	CCNNGG	4 cut(s)	205, 438, 567, 647
BseGI	GGATG	2 cut(s)	523, 628
BseLI	CCNNNNNNNGG	3 cut(s)	276, 345, 384
BseMII	CTCAG	3 cut(s)	39, 438, 453
BseNI	ACTGG	1 cut(s)	722
BseRI	GAGGAG	2 cut(s)	49, 590
BseSI	GKGCMC	1 cut(s)	319
BseXI	GCAGC	3 cut(s)	430, 476, 498
Bsh1236I	CGCG	1 cut(s)	207
BshFI	GGCC	4 cut(s)	151, 308, 338, 431
BsiHKCI	CYCGRG	2 cut(s)	281, 312
BsiSI	CCGG	3 cut(s)	165, 197, 398
BslFI	GGGAC	1 cut(s)	298
BslI	CCNNNNNNNGG	3 cut(s)	276, 345, 384
BsmAI	GTCTC	4 cut(s)	61, 179, 443, 484
BsmBI	CGTCTC	1 cut(s)	484
BsmFI	GGGAC	1 cut(s)	298
BsnI	GGCC	4 cut(s)	151, 308, 338, 431
BsoBI	CYCGRG	2 cut(s)	281, 312
Bsp1286I	GDGCHC	1 cut(s)	319
Bsp143I	GATC	1 cut(s)	546
BspANI	GGCC	4 cut(s)	151, 308, 338, 431
BspCNI	CTCAG	3 cut(s)	38, 439, 454
BspFNI	CGCG	1 cut(s)	207
BspLI	GGNNCC	2 cut(s)	255, 675
BsrBI	CCGCTC	1 cut(s)	311
BsrFI	RCCGGY	1 cut(s)	164
BsrI	ACTGG	1 cut(s)	722
BssAI	RCCGGY	1 cut(s)	164
BssECI	CCNNGG	4 cut(s)	205, 438, 567, 647
BssMI	GATC	1 cut(s)	546
BssNI	GRCGYC	1 cut(s)	477
BssSI	CACGAG	1 cut(s)	85
Bst2BI	CACGAG	1 cut(s)	85
Bst4CI	ACNGT	3 cut(s)	177, 298, 710
Bst6I	CTCTTC	1 cut(s)	621
BstACI	GRCGYC	1 cut(s)	477
BstC8I	GCNNGC	4 cut(s)	149, 162, 354, 358
BstDEI	CTNAG	4 cut(s)	25, 341, 447, 462
BstDSI	CCRYGG	1 cut(s)	205
BstF5I	GGATG	2 cut(s)	523, 628
BstFNI	CGCG	1 cut(s)	207
BstHHI	GCGC	2 cut(s)	219, 634
BstKTI	GATC	1 cut(s)	549
BstMAI	GTCTC	4 cut(s)	61, 179, 443, 484
BstMBI	GATC	1 cut(s)	546
BstMWI	GCNNNNNNNGC	9 cut(s)	157, 216, 314, 335, 440, 443, 483, 652, 762
BstNSI	RCATGY	2 cut(s)	360, 646
BstSCI	CCNGG	1 cut(s)	195
BstSLI	GKGCMC	1 cut(s)	319
BstUI	CGCG	1 cut(s)	207
BstV1I	GCAGC	3 cut(s)	430, 476, 498
Bsu36I	CCTNAGG	2 cut(s)	341, 462
BsuRI	GGCC	4 cut(s)	151, 308, 338, 431
BtgI	CCRYGG	1 cut(s)	205
BtsCI	GGATG	2 cut(s)	523, 628
Cac8I	GCNNGC	4 cut(s)	149, 162, 354, 358
CfoI	GCGC	2 cut(s)	219, 634
Cfr10I	RCCGGY	1 cut(s)	164
Cfr13I	GGNCC	3 cut(s)	337, 429, 674
Cfr42I	CCGCGG	1 cut(s)	208
CseI	GACGC	2 cut(s)	79, 466
CviAII	CATG	4 cut(s)	320, 357, 643, 664
DdeI	CTNAG	4 cut(s)	25, 341, 447, 462
DpnI	GATC	1 cut(s)	548
DpnII	GATC	1 cut(s)	546
DrdI	GACNNNNNNGTC	1 cut(s)	89
DseDI	GACNNNNNNGTC	1 cut(s)	89
EaeI	YGGCCR	1 cut(s)	306
Eam1104I	CTCTTC	1 cut(s)	621
EarI	CTCTTC	1 cut(s)	621
EciI	GGCGGA	2 cut(s)	678, 683
Eco47I	GGWCC	1 cut(s)	674
Eco81I	CCTNAGG	2 cut(s)	341, 462
Eco88I	CYCGRG	2 cut(s)	281, 312
EcoRI	GAATTC	1 cut(s)	467
Esp3I	CGTCTC	1 cut(s)	484
FaeI	CATG	4 cut(s)	323, 360, 646, 667
FaiI	YATR	7 cut(s)	289, 321, 358, 513, 644, 665, 713
FaqI	GGGAC	1 cut(s)	298
FatI	CATG	4 cut(s)	319, 356, 642, 663
Fnu4HI	GCNGC	9 cut(s)	208, 309, 330, 432, 435, 444, 475, 487, 490
FokI	GGATG	2 cut(s)	530, 635
Fsp4HI	GCNGC	9 cut(s)	208, 309, 330, 432, 435, 444, 475, 487, 490
FspBI	CTAG	2 cut(s)	137, 660
GlaI	GCGC	2 cut(s)	218, 633
GluI	GCNGC	9 cut(s)	208, 309, 330, 432, 435, 444, 475, 487, 490
HaeIII	GGCC	4 cut(s)	151, 308, 338, 431
HapII	CCGG	3 cut(s)	165, 197, 398
HgaI	GACGC	2 cut(s)	79, 466
HhaI	GCGC	2 cut(s)	219, 634
Hin1I	GRCGYC	1 cut(s)	477
Hin1II	CATG	4 cut(s)	323, 360, 646, 667
Hin6I	GCGC	2 cut(s)	217, 632
HinP1I	GCGC	2 cut(s)	217, 632
HinfI	GANTC	5 cut(s)	29, 50, 187, 374, 743
HpaII	CCGG	3 cut(s)	165, 197, 398
HphI	GGTGA	1 cut(s)	142
Hpy166II	GTNNAC	2 cut(s)	202, 677
Hpy188I	TCNGA	4 cut(s)	28, 82, 121, 568
Hpy188III	TCNNGA	3 cut(s)	94, 283, 550
Hpy8I	GTNNAC	2 cut(s)	202, 677
Hpy99I	CGWCG	4 cut(s)	125, 497, 535, 611
HpyCH4III	ACNGT	3 cut(s)	177, 298, 710
HpyF10VI	GCNNNNNNNGC	9 cut(s)	157, 216, 314, 335, 440, 443, 483, 652, 762
HpyF3I	CTNAG	4 cut(s)	25, 341, 447, 462
Hsp92I	GRCGYC	1 cut(s)	477
Hsp92II	CATG	4 cut(s)	323, 360, 646, 667
HspAI	GCGC	2 cut(s)	217, 632
KspI	CCGCGG	1 cut(s)	208
Kzo9I	GATC	1 cut(s)	546
LmnI	GCTCC	3 cut(s)	14, 253, 762
Lsp1109I	GCAGC	3 cut(s)	430, 476, 498
MaeI	CTAG	2 cut(s)	137, 660
MalI	GATC	1 cut(s)	548
MbiI	CCGCTC	1 cut(s)	311
MboI	GATC	1 cut(s)	546
MboII	GAAGA	5 cut(s)	166, 556, 610, 613, 638
MhlI	GDGCHC	1 cut(s)	319
MluCI	AATT	7 cut(s)	13, 70, 273, 364, 467, 525, 748
MlyI	GAGTC	3 cut(s)	23, 181, 752
MmeI	TCCRAC	2 cut(s)	57, 144
MspA1I	CMGCKG	2 cut(s)	207, 489
MspI	CCGG	3 cut(s)	165, 197, 398
MspR9I	CCNGG	1 cut(s)	197
MvnI	CGCG	1 cut(s)	207
MwoI	GCNNNNNNNGC	9 cut(s)	157, 216, 314, 335, 440, 443, 483, 652, 762
NciI	CCSGG	1 cut(s)	197
NdeII	GATC	1 cut(s)	546
NlaIII	CATG	4 cut(s)	323, 360, 646, 667
NlaIV	GGNNCC	2 cut(s)	255, 675
NmeAIII	GCCGAG	2 cut(s)	463, 672
NspI	RCATGY	2 cut(s)	360, 646
PaeI	GCATGC	1 cut(s)	360
PcsI	WCGNNNNNNNCGW	3 cut(s)	149, 375, 615
PfeI	GAWTC	2 cut(s)	50, 374
PflMI	CCANNNNNTGG	1 cut(s)	276
PkrI	GCNGC	9 cut(s)	209, 310, 331, 433, 436, 445, 476, 488, 491
PleI	GAGTC	3 cut(s)	23, 181, 751
PpsI	GAGTC	3 cut(s)	23, 181, 751
PspN4I	GGNNCC	2 cut(s)	255, 675
PspPI	GGNCC	3 cut(s)	337, 429, 674
PvuII	CAGCTG	1 cut(s)	489
SacII	CCGCGG	1 cut(s)	208
SatI	GCNGC	9 cut(s)	208, 309, 330, 432, 435, 444, 475, 487, 490
Sau3AI	GATC	1 cut(s)	546
Sau96I	GGNCC	3 cut(s)	337, 429, 674
SchI	GAGTC	3 cut(s)	23, 181, 752
ScrFI	CCNGG	1 cut(s)	197
SduI	GDGCHC	1 cut(s)	319
Sfr303I	CCGCGG	1 cut(s)	208
SgrBI	CCGCGG	1 cut(s)	208
SinI	GGWCC	1 cut(s)	674
SmlI	CTYRAG	1 cut(s)	481
SmoI	CTYRAG	1 cut(s)	481
SphI	GCATGC	1 cut(s)	360
Sse9I	AATT	7 cut(s)	13, 70, 273, 364, 467, 525, 748
SspI	AATATT	1 cut(s)	116
SspMI	CTAG	2 cut(s)	137, 660
StyD4I	CCNGG	1 cut(s)	195
TaaI	ACNGT	3 cut(s)	177, 298, 710
TaqI	TCGA	6 cut(s)	48, 66, 143, 417, 457, 639
TasI	AATT	7 cut(s)	13, 70, 273, 364, 467, 525, 748
TauI	GCSGC	6 cut(s)	210, 311, 332, 434, 437, 477
TfiI	GAWTC	2 cut(s)	50, 374
TseI	GCWGC	3 cut(s)	443, 486, 489
TspDTI	ATGAA	3 cut(s)	17, 639, 728
TspGWI	ACGGA	2 cut(s)	367, 548
Van91I	CCANNNNNTGG	1 cut(s)	276
VpaK11BI	GGWCC	1 cut(s)	674
XapI	RAATTY	3 cut(s)	273, 467, 748
XceI	RCATGY	2 cut(s)	360, 646
XspI	CTAG	2 cut(s)	137, 660

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.