Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0000958

Physical Location & Seq

Genomic Coordinates Reverse (-)

17779619 .. 17780323

Gene Structure 705 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1072300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGAATACGATCTTCAGTCAAATCTCCGATTCCTCCGAAAAGCCGGAATCGAGCTCCGACGACACAAGCATCTTGACTCGAAGCCAGCTGGCTTCGTTCTCCGACGAGGTCATTTTGGCGTCCAGCAGGCCGAAGAAGCGAGCAGGGAGGAGAGTTTTCAAGGAGACGAGGCACCCGATTTACAGAGGAGTGAGGAGGAGGAACAACAACAAGTGGGTGTGCGAAATGAGAGAACCAAACAAAAAGAAGTCGAGGATATGGCTCGGAACTTATCAGACGGCCGAGATGGCAGCTCGGGCGCATGACGTGGCGGCATTGGCCTTTAGAGGGAAGCTTGCCTGCCTCAATTTTGCAGACTCCGTATGGCGCCTGCCCGTTCCGGCATCCACTGATTCAGTGGATATCAGGCGGGCAGCAGCGGAGGCTGCAGAGACCTTCCGGCCAGAGGAGTTTGGCGGAGTGTCGGAAAGCGGCGATGATGAGAAGGAGAGCAAGAAAATGGAGGGGGAGAAGGATTGTGGAGGCGCGGAGGAAAGTGGAATCTTGTTGTACTTGGATGAGGAGGAAATGTTCGACATGCCAAGGTTGCTGGATAGTATGGCGGAAGGGCTTCTGCTCTCTCCACCTCACTCTTCAGGTGGCTACATGAACTGGGATGACATGGAAAGCAACGATGACGTCAGTCTGTGGAGCTTCTCAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0001558 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009889 GO:0009987 GO:0010035 GO:0010371 GO:0010468 GO:0010556 GO:0010565 GO:0010817 GO:0016143 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0019748 GO:0019757 GO:0019760 GO:0022603 GO:0022604 GO:0031323 GO:0031326 GO:0032350 GO:0040008 GO:0040034 GO:0042221 GO:0043436 GO:0043455 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0046885 GO:0046890 GO:0048506 GO:0048509 GO:0048510 GO:0048638 GO:0050789 GO:0050793 GO:0050794 GO:0050826 GO:0050896 GO:0051128 GO:0051171 GO:0051252 GO:0051510 GO:0060255 GO:0062012 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

235

Amino Acids

26.26

Weight (kDa)

5.05

Isoelectric Point (pI)

64.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	60 - 110	1.4e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000958)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12610 AT1G63030 AT1G63030
fragaria_vesca	FvH4_5g01440
malus_domestica	MD04G1067800.v1.1 MD04G1067900.v1.1 MD06G1072300.v1.1
prunus_persica	Prupe.5G089900_v2.0.a1 Prupe.5G090000_v2.0.a1 Prupe.5G090100_v2.0.a1 Prupe.5G090200_v2.0.a1 Prupe.5G090500_v2.0.a1
pyrus_communis	pycom04g06140 pycom06g07110 pycom06g07120
rosa_chinensis	RchiOBHm_Chr7g0199251 RchiOBHm_Chr7g0199301 RchiOBHm_Chr7g0199331 RchiOBHm_Chr7g0199351 RchiOBHm_Chr7g0199381
rosa_laevigata	RLG00000002739 RLG00000002740 RLG00000003796 RLG00000003799 RLG00000003801
rosa_multiflora	Rmu_co8046292.1_g000001 Rmu_co8280319.1_g000001 Rmu_sc0000855.1_g000009 Rmu_sc0000950.1_g000001 Rmu_sc0000950.1_g000005 Rmu_sc0007820.1_g000002 Rmu_sc0010720.1_g000001 Rmu_sc0039534.1_g000001
rosa_roxburghii	Rroxscaffold_3G00256750 Rroxscaffold_3G00256770 Rroxscaffold_3G00256870 Rroxscaffold_5G00359530
rosa_rugosa	Rorug07G0053500 Rorug07G0053500 Rorug07G0053500 Rorug07G0053800
rosa_samantha	Rh4BG264100 Rh7AG177700 Rh7AG177900 Rh7AG178000 Rh7AG178100 Rh7AG178600 Rh7BG181300 Rh7BG181400 Rh7BG181600 Rh7BG181900 Rh7BG182100 Rh7CG186800 Rh7CG187000 Rh7CG187200 Rh7CG187400 Rh7DG180800 Rh7DG181700
rosa_wichuraiana	Rw7G015620 Rw7G015630 Rw7G015650 Rw7G015670 Rw7G015680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	681
AccB1I	GGYRCC	2 cut(s)	171, 366
AccII	CGCG	1 cut(s)	527
AciI	CCGC	7 cut(s)	311, 409, 419, 456, 471, 527, 602
AcoI	YGGCCR	2 cut(s)	279, 440
AcuI	CTGAAG	1 cut(s)	618
AcyI	GRCGYC	3 cut(s)	119, 367, 678
AfaI	GTAC	1 cut(s)	551
AfiI	CCNNNNNNNGG	2 cut(s)	327, 445
AgsI	TTSAA	1 cut(s)	160
AjiI	CACGTC	1 cut(s)	307
AloI	GAACNNNNNNTCC	2 cut(s)	554, 586
AluBI	AGCT	5 cut(s)	54, 88, 293, 334, 693
AluI	AGCT	5 cut(s)	54, 88, 293, 334, 693
Alw21I	GWGCWC	1 cut(s)	56
Alw26I	GTCTC	2 cut(s)	158, 425
Ama87I	CYCGRG	1 cut(s)	294
AoxI	GGCC	4 cut(s)	128, 279, 318, 440
ApeKI	GCWGC	4 cut(s)	290, 413, 416, 425
Asp700I	GAANNNNTTC	1 cut(s)	609
AspLEI	GCGC	3 cut(s)	301, 369, 527
AvaI	CYCGRG	1 cut(s)	294
BanI	GGYRCC	2 cut(s)	171, 366
BanII	GRGCYC	1 cut(s)	56
Bbv12I	GWGCWC	1 cut(s)	56
BbvI	GCAGC	4 cut(s)	302, 412, 425, 428
BccI	CCATC	1 cut(s)	280
BceAI	ACGGC	1 cut(s)	294
BcoDI	GTCTC	2 cut(s)	158, 425
BfmI	CTRYAG	1 cut(s)	426
BfoI	RGCGCY	1 cut(s)	370
BglI	GCCNNNNNGGC	1 cut(s)	287
BisI	GCNGC	6 cut(s)	291, 312, 414, 417, 426, 472
BlsI	GCNGC	6 cut(s)	292, 313, 415, 418, 427, 473
BmeT110I	CYCGRG	1 cut(s)	294
BmgBI	CACGTC	1 cut(s)	307
BmiI	GGNNCC	2 cut(s)	173, 368
BmrI	ACTGGG	1 cut(s)	661
BmsI	GCATC	2 cut(s)	78, 392
BmuI	ACTGGG	1 cut(s)	661
BoxI	GACNNNNGTC	1 cut(s)	681
BsaHI	GRCGYC	3 cut(s)	119, 367, 678
BsaI	GGTCTC	1 cut(s)	425
BsaJI	CCNNGG	1 cut(s)	581
BsaXI	ACNNNNNCTCC	2 cut(s)	554, 584
Bsc4I	CCNNNNNNNGG	2 cut(s)	327, 445
Bse1I	ACTGG	1 cut(s)	656
BseDI	CCNNGG	1 cut(s)	581
BseGI	GGATG	3 cut(s)	383, 562, 661
BseLI	CCNNNNNNNGG	2 cut(s)	327, 445
BseNI	ACTGG	1 cut(s)	656
BseRI	GAGGAG	6 cut(s)	163, 201, 208, 211, 461, 575
BseX3I	CGGCCG	1 cut(s)	279
BseXI	GCAGC	4 cut(s)	302, 412, 425, 428
Bsh1236I	CGCG	1 cut(s)	527
Bsh1285I	CGRYCG	1 cut(s)	282
BshFI	GGCC	4 cut(s)	130, 281, 320, 442
BshNI	GGYRCC	2 cut(s)	171, 366
BsiEI	CGRYCG	1 cut(s)	282
BsiHKAI	GWGCWC	1 cut(s)	56
BsiHKCI	CYCGRG	1 cut(s)	294
BsiSI	CCGG	3 cut(s)	44, 380, 439
BslI	CCNNNNNNNGG	2 cut(s)	327, 445
BsmAI	GTCTC	2 cut(s)	158, 425
BsmBI	CGTCTC	1 cut(s)	158
BsnI	GGCC	4 cut(s)	130, 281, 320, 442
Bso31I	GGTCTC	1 cut(s)	425
BsoBI	CYCGRG	1 cut(s)	294
Bsp1286I	GDGCHC	1 cut(s)	56
Bsp143I	GATC	1 cut(s)	9
BspACI	CCGC	7 cut(s)	311, 409, 419, 456, 471, 527, 602
BspANI	GGCC	4 cut(s)	130, 281, 320, 442
BspFNI	CGCG	1 cut(s)	527
BspLI	GGNNCC	2 cut(s)	173, 368
BspMAI	CTGCAG	1 cut(s)	430
BspT107I	GGYRCC	2 cut(s)	171, 366
BspTNI	GGTCTC	1 cut(s)	425
BsrI	ACTGG	1 cut(s)	656
BssECI	CCNNGG	1 cut(s)	581
BssMI	GATC	1 cut(s)	9
BssNI	GRCGYC	3 cut(s)	119, 367, 678
BssT1I	CCWWGG	1 cut(s)	581
Bst6I	CTCTTC	1 cut(s)	637
BstACI	GRCGYC	3 cut(s)	119, 367, 678
BstC8I	GCNNGC	8 cut(s)	86, 90, 128, 141, 336, 340, 371, 411
BstF5I	GGATG	3 cut(s)	383, 562, 661
BstFNI	CGCG	1 cut(s)	527
BstH2I	RGCGCY	1 cut(s)	370
BstHHI	GCGC	3 cut(s)	301, 369, 527
BstKTI	GATC	1 cut(s)	12
BstMAI	GTCTC	2 cut(s)	158, 425
BstMBI	GATC	1 cut(s)	9
BstMCI	CGRYCG	1 cut(s)	282
BstMWI	GCNNNNNNNGC	7 cut(s)	136, 287, 296, 317, 422, 425, 586
BstNSI	RCATGY	1 cut(s)	580
BstPAI	GACNNNNGTC	1 cut(s)	681
BstSFI	CTRYAG	1 cut(s)	426
BstUI	CGCG	1 cut(s)	527
BstV1I	GCAGC	4 cut(s)	302, 412, 425, 428
BstZI	CGGCCG	1 cut(s)	279
BsuRI	GGCC	4 cut(s)	130, 281, 320, 442
BtgZI	GCGATG	1 cut(s)	489
BtrI	CACGTC	1 cut(s)	307
BtsCI	GGATG	3 cut(s)	383, 562, 661
BtsIMutI	CAGTG	2 cut(s)	387, 402
Cac8I	GCNNGC	8 cut(s)	86, 90, 128, 141, 336, 340, 371, 411
CfoI	GCGC	3 cut(s)	301, 369, 527
CseI	GACGC	1 cut(s)	108
Csp6I	GTAC	1 cut(s)	550
CviAII	CATG	4 cut(s)	302, 577, 646, 661
CviQI	GTAC	1 cut(s)	550
DinI	GGCGCC	1 cut(s)	368
DpnI	GATC	1 cut(s)	11
DpnII	GATC	1 cut(s)	9
EaeI	YGGCCR	2 cut(s)	279, 440
EagI	CGGCCG	1 cut(s)	279
Eam1104I	CTCTTC	1 cut(s)	637
EarI	CTCTTC	1 cut(s)	637
EciI	GGCGGA	2 cut(s)	471, 617
Ecl136II	GAGCTC	1 cut(s)	54
EclXI	CGGCCG	1 cut(s)	279
Eco130I	CCWWGG	1 cut(s)	581
Eco24I	GRGCYC	1 cut(s)	56
Eco31I	GGTCTC	1 cut(s)	425
Eco32I	GATATC	1 cut(s)	403
Eco52I	CGGCCG	1 cut(s)	279
Eco53kI	GAGCTC	1 cut(s)	54
Eco57I	CTGAAG	1 cut(s)	618
Eco88I	CYCGRG	1 cut(s)	294
EcoICRI	GAGCTC	1 cut(s)	54
EcoRV	GATATC	1 cut(s)	403
EcoT14I	CCWWGG	1 cut(s)	581
EcoT38I	GRGCYC	1 cut(s)	56
EgeI	GGCGCC	1 cut(s)	368
EheI	GGCGCC	1 cut(s)	368
ErhI	CCWWGG	1 cut(s)	581
Esp3I	CGTCTC	1 cut(s)	158
FaeI	CATG	4 cut(s)	305, 580, 649, 664
FaiI	YATR	7 cut(s)	259, 303, 364, 578, 599, 647, 662
FatI	CATG	4 cut(s)	301, 576, 645, 660
FauI	CCCGC	1 cut(s)	402
Fnu4HI	GCNGC	6 cut(s)	291, 312, 414, 417, 426, 472
FokI	GGATG	3 cut(s)	370, 569, 668
FriOI	GRGCYC	1 cut(s)	56
Fsp4HI	GCNGC	6 cut(s)	291, 312, 414, 417, 426, 472
GlaI	GCGC	3 cut(s)	300, 368, 526
GluI	GCNGC	6 cut(s)	291, 312, 414, 417, 426, 472
HaeII	RGCGCY	1 cut(s)	370
HaeIII	GGCC	4 cut(s)	130, 281, 320, 442
HapII	CCGG	3 cut(s)	44, 380, 439
HgaI	GACGC	1 cut(s)	108
HhaI	GCGC	3 cut(s)	301, 369, 527
Hin1I	GRCGYC	3 cut(s)	119, 367, 678
Hin1II	CATG	4 cut(s)	305, 580, 649, 664
Hin6I	GCGC	3 cut(s)	299, 367, 525
HinP1I	GCGC	3 cut(s)	299, 367, 525
HindIII	AAGCTT	1 cut(s)	332
HinfI	GANTC	6 cut(s)	29, 47, 76, 356, 392, 540
HpaII	CCGG	3 cut(s)	44, 380, 439
Hpy188I	TCNGA	7 cut(s)	28, 37, 58, 103, 266, 276, 466
Hpy188III	TCNNGA	1 cut(s)	73
Hpy99I	CGWCG	2 cut(s)	62, 107
HpyAV	CCTTC	4 cut(s)	445, 478, 505, 599
HpyCH4IV	ACGT	2 cut(s)	306, 678
HpyCH4V	TGCA	2 cut(s)	353, 428
HpyF10VI	GCNNNNNNNGC	7 cut(s)	136, 287, 296, 317, 422, 425, 586
HpySE526I	ACGT	2 cut(s)	306, 678
Hsp92I	GRCGYC	3 cut(s)	119, 367, 678
Hsp92II	CATG	4 cut(s)	305, 580, 649, 664
HspAI	GCGC	3 cut(s)	299, 367, 525
KasI	GGCGCC	1 cut(s)	366
Kzo9I	GATC	1 cut(s)	9
LmnI	GCTCC	2 cut(s)	59, 690
Lsp1109I	GCAGC	4 cut(s)	302, 412, 425, 428
LweI	GCATC	2 cut(s)	78, 392
MaeII	ACGT	2 cut(s)	306, 678
MalI	GATC	1 cut(s)	11
MboI	GATC	1 cut(s)	9
MboII	GAAGA	3 cut(s)	4, 145, 624
MhlI	GDGCHC	1 cut(s)	56
MluCI	AATT	2 cut(s)	346, 700
Mly113I	GGCGCC	1 cut(s)	367
MlyI	GAGTC	2 cut(s)	70, 350
MmeI	TCCRAC	3 cut(s)	81, 126, 444
MroXI	GAANNNNTTC	1 cut(s)	609
MspA1I	CMGCKG	2 cut(s)	88, 419
MspI	CCGG	3 cut(s)	44, 380, 439
MvnI	CGCG	1 cut(s)	527
MwoI	GCNNNNNNNGC	7 cut(s)	136, 287, 296, 317, 422, 425, 586
NarI	GGCGCC	1 cut(s)	367
NdeII	GATC	1 cut(s)	9
NlaIII	CATG	4 cut(s)	305, 580, 649, 664
NlaIV	GGNNCC	2 cut(s)	173, 368
NmeAIII	GCCGAG	1 cut(s)	307
NspI	RCATGY	1 cut(s)	580
PcsI	WCGNNNNNNNCGW	1 cut(s)	173
PdmI	GAANNNNTTC	1 cut(s)	609
PfeI	GAWTC	4 cut(s)	29, 47, 392, 540
PflFI	GACNNNGTC	1 cut(s)	107
PkrI	GCNGC	6 cut(s)	292, 313, 415, 418, 427, 473
PleI	GAGTC	2 cut(s)	70, 350
PluTI	GGCGCC	1 cut(s)	370
PpsI	GAGTC	2 cut(s)	70, 350
PshAI	GACNNNNGTC	1 cut(s)	681
Psp124BI	GAGCTC	1 cut(s)	56
PspN4I	GGNNCC	2 cut(s)	173, 368
PstI	CTGCAG	1 cut(s)	430
PsyI	GACNNNGTC	1 cut(s)	107
PvuII	CAGCTG	1 cut(s)	88
RsaI	GTAC	1 cut(s)	551
RsaNI	GTAC	1 cut(s)	550
SacI	GAGCTC	1 cut(s)	56
SatI	GCNGC	6 cut(s)	291, 312, 414, 417, 426, 472
Sau3AI	GATC	1 cut(s)	9
SchI	GAGTC	2 cut(s)	70, 350
SduI	GDGCHC	1 cut(s)	56
SfaNI	GCATC	2 cut(s)	78, 392
SfcI	CTRYAG	1 cut(s)	426
SfoI	GGCGCC	1 cut(s)	368
Sse9I	AATT	2 cut(s)	346, 700
SsiI	CCGC	7 cut(s)	311, 409, 419, 456, 471, 527, 602
SspDI	GGCGCC	1 cut(s)	366
SstI	GAGCTC	1 cut(s)	56
StyI	CCWWGG	1 cut(s)	581
TaiI	ACGT	2 cut(s)	309, 681
TaqI	TCGA	4 cut(s)	50, 79, 251, 573
TasI	AATT	2 cut(s)	346, 700
TatI	WGTACW	1 cut(s)	549
TauI	GCSGC	2 cut(s)	314, 474
TfiI	GAWTC	4 cut(s)	29, 47, 392, 540
TscAI	CASTG	2 cut(s)	394, 402
TseI	GCWGC	4 cut(s)	290, 413, 416, 425
TspDTI	ATGAA	2 cut(s)	17, 662
TspGWI	ACGGA	1 cut(s)	349
TspRI	CASTG	2 cut(s)	394, 402
Tth111I	GACNNNGTC	1 cut(s)	107
XceI	RCATGY	1 cut(s)	580
XcmI	CCANNNNNNNNNTGG	1 cut(s)	394
XmnI	GAANNNNTTC	1 cut(s)	609
ZraI	GACGTC	1 cut(s)	679

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.