Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0000958

Physical Location & Seq

Genomic Coordinates Reverse (-)

10057200 .. 10058124

Gene Structure 925 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G090100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGACTTGTCTCAACTTTCCGACCCGGTCGACCAGCCCGAGTCGAGTTCTTTGTCCGACGCCAGCGTCACGACTCAGGGACCTTCTTGGTCCGACGGGGACGTCATATTGGCTTCGAGCCTGCCAAAGAAGCGAGCCGGGAGGAGGGTTTTCAAGGAGACGAGGCACCCTGTTTATAGGGGTGTGAGGAGGAGGAACAATGACAAGTGGGTGTGTGAAATGAGAGAGCCCAACAAGAAGAAGTCCAGGATATGGCTCGGGACTTATCCGACGGCGGAGATGGCTGCTCGAGCCCATGACGTGGCGGCATTGGCGTTTAGAGGGAAGCTTGCCTGCATCAATTTTGCTGACTCCGCGTGGAGGCTGCCCTTGCCGGCTTCCATGGATACCATGGATATTCGGAGAGCGGCCGCGGAGGCAGCTGAGAGGTTTAGGCCGGCGGAGTTTGGTGGAATGTGCAGCGGCAGCAGTGATGAGAAGGAGAGAATGGTGGTGCAGGTGGAAGAGGAGGACAAGAAGGGTAGTGTGAACTTGGAAAGAAGCTTGAGCTTGTCCTGTTGGGATGAGGAGGAAGCGTTTGACATGCCCAGGTTGCTTCACGACATGGCTGAAGGGCTTCTTCTTTCTCCACCGCAACCCTTAGGCAGCGACATGAATTTGGATGACATGGGTACCGATGCTGATATCAAATTGTGGAGTTTCTCCATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0001558 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009889 GO:0009987 GO:0010035 GO:0010371 GO:0010468 GO:0010556 GO:0010565 GO:0010817 GO:0016143 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0019748 GO:0019757 GO:0019760 GO:0022603 GO:0022604 GO:0031323 GO:0031326 GO:0032350 GO:0040008 GO:0040034 GO:0042221 GO:0043436 GO:0043455 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0046885 GO:0046890 GO:0048506 GO:0048509 GO:0048510 GO:0048638 GO:0050789 GO:0050793 GO:0050794 GO:0050826 GO:0050896 GO:0051128 GO:0051171 GO:0051252 GO:0051510 GO:0060255 GO:0062012 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

237

Amino Acids

26.35

Weight (kDa)

5.17

Isoelectric Point (pI)

52.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000958)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12610 AT1G63030 AT1G63030
fragaria_vesca	FvH4_5g01440
malus_domestica	MD04G1067800.v1.1 MD04G1067900.v1.1 MD06G1072300.v1.1
prunus_persica	Prupe.5G089900_v2.0.a1 Prupe.5G090000_v2.0.a1 Prupe.5G090100_v2.0.a1 Prupe.5G090200_v2.0.a1 Prupe.5G090500_v2.0.a1
pyrus_communis	pycom04g06140 pycom06g07110 pycom06g07120
rosa_chinensis	RchiOBHm_Chr7g0199251 RchiOBHm_Chr7g0199301 RchiOBHm_Chr7g0199331 RchiOBHm_Chr7g0199351 RchiOBHm_Chr7g0199381
rosa_laevigata	RLG00000002739 RLG00000002740 RLG00000003796 RLG00000003799 RLG00000003801
rosa_multiflora	Rmu_co8046292.1_g000001 Rmu_co8280319.1_g000001 Rmu_sc0000855.1_g000009 Rmu_sc0000950.1_g000001 Rmu_sc0000950.1_g000005 Rmu_sc0007820.1_g000002 Rmu_sc0010720.1_g000001 Rmu_sc0039534.1_g000001
rosa_roxburghii	Rroxscaffold_3G00256750 Rroxscaffold_3G00256770 Rroxscaffold_3G00256870 Rroxscaffold_5G00359530
rosa_rugosa	Rorug07G0053500 Rorug07G0053500 Rorug07G0053500 Rorug07G0053800
rosa_samantha	Rh4BG264100 Rh7AG177700 Rh7AG177900 Rh7AG178000 Rh7AG178100 Rh7AG178600 Rh7BG181300 Rh7BG181400 Rh7BG181600 Rh7BG181900 Rh7BG182100 Rh7CG186800 Rh7CG187000 Rh7CG187200 Rh7CG187400 Rh7DG180800 Rh7DG181700
rosa_wichuraiana	Rw7G015620 Rw7G015630 Rw7G015650 Rw7G015670 Rw7G015680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	487
AasI	GACNNNNNNGTC	2 cut(s)	65, 101
AatII	GACGTC	1 cut(s)	105
Acc36I	ACCTGC	1 cut(s)	487
Acc65I	GGTACC	1 cut(s)	671
AccB1I	GGYRCC	2 cut(s)	165, 671
AccB7I	CCANNNNNTGG	2 cut(s)	252, 301
AccBSI	CCGCTC	1 cut(s)	407
AccI	GTMKAC	1 cut(s)	30
AccII	CGCG	2 cut(s)	356, 413
AciI	CCGC	9 cut(s)	275, 305, 354, 407, 411, 413, 440, 462, 632
AcoI	YGGCCR	1 cut(s)	408
AcsI	RAATTY	1 cut(s)	655
AcuI	CTGAAG	1 cut(s)	630
AcyI	GRCGYC	2 cut(s)	60, 102
AfaI	GTAC	1 cut(s)	673
AfiI	CCNNNNNNNGG	4 cut(s)	144, 252, 301, 360
AgsI	TTSAA	1 cut(s)	154
AjiI	CACGTC	1 cut(s)	301
AjnI	CCWGG	2 cut(s)	245, 587
AluBI	AGCT	4 cut(s)	328, 422, 543, 549
AluI	AGCT	4 cut(s)	328, 422, 543, 549
Alw26I	GTCTC	2 cut(s)	15, 152
Ama87I	CYCGRG	3 cut(s)	38, 257, 288
AoxI	GGCC	2 cut(s)	408, 434
ApeKI	GCWGC	6 cut(s)	284, 364, 419, 459, 465, 645
ApoI	RAATTY	1 cut(s)	655
Asp700I	GAANNNNTTC	1 cut(s)	615
Asp718I	GGTACC	1 cut(s)	671
AspS9I	GGNCC	2 cut(s)	80, 90
AsuC2I	CCSGG	2 cut(s)	26, 139
AvaI	CYCGRG	3 cut(s)	38, 257, 288
AvaII	GGWCC	2 cut(s)	80, 90
AxyI	CCTNAGG	1 cut(s)	640
BaeI	ACNNNNGTAYC	2 cut(s)	655, 688
BanI	GGYRCC	2 cut(s)	165, 671
BanII	GRGCYC	2 cut(s)	231, 295
BbvI	GCAGC	6 cut(s)	271, 351, 431, 471, 477, 657
BccI	CCATC	1 cut(s)	274
BceAI	ACGGC	1 cut(s)	288
BciT130I	CCWGG	2 cut(s)	247, 589
BciVI	GTATCC	1 cut(s)	379
BcnI	CCSGG	2 cut(s)	26, 139
BcoDI	GTCTC	2 cut(s)	15, 152
BfuAI	ACCTGC	1 cut(s)	487
BfuI	GTATCC	1 cut(s)	379
BglI	GCCNNNNNGGC	1 cut(s)	416
Bme1390I	CCNGG	4 cut(s)	26, 139, 247, 589
Bme18I	GGWCC	2 cut(s)	80, 90
BmeT110I	CYCGRG	3 cut(s)	38, 257, 288
BmgBI	CACGTC	1 cut(s)	301
BmgT120I	GGNCC	2 cut(s)	80, 90
BmiI	GGNNCC	3 cut(s)	81, 167, 673
BmrFI	CCNGG	4 cut(s)	26, 139, 247, 589
BmsI	GCATC	2 cut(s)	345, 667
BpuEI	CTTGAG	1 cut(s)	565
BpuMI	CCSGG	2 cut(s)	26, 139
BsaHI	GRCGYC	2 cut(s)	60, 102
BsaJI	CCNNGG	4 cut(s)	381, 390, 411, 587
BsaXI	ACNNNNNCTCC	2 cut(s)	560, 590
Bsc4I	CCNNNNNNNGG	4 cut(s)	144, 252, 301, 360
Bse118I	RCCGGY	2 cut(s)	373, 436
Bse21I	CCTNAGG	1 cut(s)	640
BseBI	CCWGG	2 cut(s)	247, 589
BseDI	CCNNGG	4 cut(s)	381, 390, 411, 587
BseGI	GGATG	2 cut(s)	568, 667
BseLI	CCNNNNNNNGG	4 cut(s)	144, 252, 301, 360
BseMII	CTCAG	2 cut(s)	89, 414
BseRI	GAGGAG	5 cut(s)	157, 202, 205, 521, 581
BseX3I	CGGCCG	1 cut(s)	408
BseXI	GCAGC	6 cut(s)	271, 351, 431, 471, 477, 657
BsgI	GTGCAG	2 cut(s)	478, 515
Bsh1236I	CGCG	2 cut(s)	356, 413
Bsh1285I	CGRYCG	2 cut(s)	30, 411
BshFI	GGCC	2 cut(s)	410, 436
BshNI	GGYRCC	2 cut(s)	165, 671
BsiEI	CGRYCG	2 cut(s)	30, 411
BsiHKCI	CYCGRG	3 cut(s)	38, 257, 288
BsiSI	CCGG	4 cut(s)	26, 138, 374, 437
BslFI	GGGAC	3 cut(s)	93, 113, 274
BslI	CCNNNNNNNGG	4 cut(s)	144, 252, 301, 360
BsmAI	GTCTC	2 cut(s)	15, 152
BsmBI	CGTCTC	1 cut(s)	152
BsmFI	GGGAC	3 cut(s)	93, 113, 274
BsnI	GGCC	2 cut(s)	410, 436
BsoBI	CYCGRG	3 cut(s)	38, 257, 288
Bsp1286I	GDGCHC	2 cut(s)	231, 295
Bsp19I	CCATGG	2 cut(s)	381, 390
BspACI	CCGC	9 cut(s)	275, 305, 354, 407, 411, 413, 440, 462, 632
BspANI	GGCC	2 cut(s)	410, 436
BspCNI	CTCAG	2 cut(s)	88, 415
BspFNI	CGCG	2 cut(s)	356, 413
BspLI	GGNNCC	3 cut(s)	81, 167, 673
BspMI	ACCTGC	1 cut(s)	487
BspT107I	GGYRCC	2 cut(s)	165, 671
BsrBI	CCGCTC	1 cut(s)	407
BsrFI	RCCGGY	2 cut(s)	373, 436
BssAI	RCCGGY	2 cut(s)	373, 436
BssECI	CCNNGG	4 cut(s)	381, 390, 411, 587
BssNI	GRCGYC	2 cut(s)	60, 102
BssT1I	CCWWGG	2 cut(s)	381, 390
Bst2UI	CCWGG	2 cut(s)	247, 589
Bst6I	CTCTTC	1 cut(s)	498
BstACI	GRCGYC	2 cut(s)	60, 102
BstC8I	GCNNGC	7 cut(s)	64, 122, 135, 330, 334, 375, 438
BstDEI	CTNAG	3 cut(s)	75, 423, 640
BstDSI	CCRYGG	3 cut(s)	381, 390, 411
BstF5I	GGATG	2 cut(s)	568, 667
BstFNI	CGCG	2 cut(s)	356, 413
BstMAI	GTCTC	2 cut(s)	15, 152
BstMCI	CGRYCG	2 cut(s)	30, 411
BstNI	CCWGG	2 cut(s)	247, 589
BstNSI	RCATGY	1 cut(s)	586
BstSCI	CCNGG	4 cut(s)	24, 137, 245, 587
BstUI	CGCG	2 cut(s)	356, 413
BstV1I	GCAGC	6 cut(s)	271, 351, 431, 471, 477, 657
BstZI	CGGCCG	1 cut(s)	408
Bsu36I	CCTNAGG	1 cut(s)	640
BsuI	GTATCC	1 cut(s)	379
BsuRI	GGCC	2 cut(s)	410, 436
BtgI	CCRYGG	3 cut(s)	381, 390, 411
BtrI	CACGTC	1 cut(s)	301
BtsCI	GGATG	2 cut(s)	568, 667
BtsI	GCAGTG	1 cut(s)	475
BtsIMutI	CAGTG	1 cut(s)	475
BveI	ACCTGC	1 cut(s)	487
Cac8I	GCNNGC	7 cut(s)	64, 122, 135, 330, 334, 375, 438
CciNI	GCGGCCGC	1 cut(s)	408
Cfr10I	RCCGGY	2 cut(s)	373, 436
Cfr13I	GGNCC	2 cut(s)	80, 90
Cfr42I	CCGCGG	1 cut(s)	414
CseI	GACGC	2 cut(s)	55, 68
Csp6I	GTAC	1 cut(s)	672
CviAII	CATG	7 cut(s)	296, 382, 391, 583, 604, 652, 667
CviQI	GTAC	1 cut(s)	672
DdeI	CTNAG	3 cut(s)	75, 423, 640
DrdI	GACNNNNNNGTC	2 cut(s)	65, 101
DseDI	GACNNNNNNGTC	2 cut(s)	65, 101
EaeI	YGGCCR	1 cut(s)	408
EagI	CGGCCG	1 cut(s)	408
Eam1104I	CTCTTC	1 cut(s)	498
EarI	CTCTTC	1 cut(s)	498
EciI	GGCGGA	2 cut(s)	290, 455
EclXI	CGGCCG	1 cut(s)	408
Eco130I	CCWWGG	2 cut(s)	381, 390
Eco24I	GRGCYC	2 cut(s)	231, 295
Eco32I	GATATC	1 cut(s)	685
Eco47I	GGWCC	2 cut(s)	80, 90
Eco52I	CGGCCG	1 cut(s)	408
Eco57I	CTGAAG	1 cut(s)	630
Eco81I	CCTNAGG	1 cut(s)	640
Eco88I	CYCGRG	3 cut(s)	38, 257, 288
EcoO109I	RGGNCCY	1 cut(s)	80
EcoRII	CCWGG	2 cut(s)	245, 587
EcoRV	GATATC	1 cut(s)	685
EcoT14I	CCWWGG	2 cut(s)	381, 390
EcoT38I	GRGCYC	2 cut(s)	231, 295
ErhI	CCWWGG	2 cut(s)	381, 390
Esp3I	CGTCTC	1 cut(s)	152
FaeI	CATG	7 cut(s)	299, 385, 394, 586, 607, 655, 670
FalI	AAGNNNNNCTT	2 cut(s)	603, 635
FaqI	GGGAC	3 cut(s)	93, 113, 274
FatI	CATG	7 cut(s)	295, 381, 390, 582, 603, 651, 666
FblI	GTMKAC	1 cut(s)	30
FokI	GGATG	2 cut(s)	575, 674
FriOI	GRGCYC	2 cut(s)	231, 295
HaeIII	GGCC	2 cut(s)	410, 436
HapII	CCGG	4 cut(s)	26, 138, 374, 437
HgaI	GACGC	2 cut(s)	55, 68
Hin1I	GRCGYC	2 cut(s)	60, 102
Hin1II	CATG	7 cut(s)	299, 385, 394, 586, 607, 655, 670
HincII	GTYRAC	1 cut(s)	31
HindII	GTYRAC	1 cut(s)	31
HindIII	AAGCTT	2 cut(s)	326, 541
HinfI	GANTC	3 cut(s)	41, 73, 350
HpaII	CCGG	4 cut(s)	26, 138, 374, 437
Hpy166II	GTNNAC	2 cut(s)	31, 529
Hpy188I	TCNGA	5 cut(s)	22, 58, 94, 270, 402
Hpy188III	TCNNGA	3 cut(s)	70, 259, 599
Hpy8I	GTNNAC	2 cut(s)	31, 529
Hpy99I	CGWCG	3 cut(s)	62, 98, 274
HpyAV	CCTTC	4 cut(s)	93, 472, 511, 605
HpyCH4IV	ACGT	2 cut(s)	102, 300
HpyCH4V	TGCA	3 cut(s)	336, 459, 496
HpyF3I	CTNAG	3 cut(s)	75, 423, 640
HpySE526I	ACGT	2 cut(s)	102, 300
Hsp92I	GRCGYC	2 cut(s)	60, 102
Hsp92II	CATG	7 cut(s)	299, 385, 394, 586, 607, 655, 670
KpnI	GGTACC	1 cut(s)	675
KroI	GCCGGC	2 cut(s)	373, 436
KroNI	GCCGGC	2 cut(s)	375, 438
KspI	CCGCGG	1 cut(s)	414
Lsp1109I	GCAGC	6 cut(s)	271, 351, 431, 471, 477, 657
LweI	GCATC	2 cut(s)	345, 667
MaeII	ACGT	2 cut(s)	102, 300
MaeIII	GTNAC	1 cut(s)	67
MbiI	CCGCTC	1 cut(s)	407
MboII	GAAGA	3 cut(s)	250, 515, 611
MhlI	GDGCHC	2 cut(s)	231, 295
MluCI	AATT	3 cut(s)	340, 655, 689
MlyI	GAGTC	3 cut(s)	50, 67, 344
MmeI	TCCRAC	4 cut(s)	45, 81, 117, 293
MroNI	GCCGGC	2 cut(s)	373, 436
MroXI	GAANNNNTTC	1 cut(s)	615
MseI	TTAA	1 cut(s)	709
MspA1I	CMGCKG	3 cut(s)	413, 422, 462
MspI	CCGG	4 cut(s)	26, 138, 374, 437
MspR9I	CCNGG	4 cut(s)	26, 139, 247, 589
MvaI	CCWGG	2 cut(s)	247, 589
MvnI	CGCG	2 cut(s)	356, 413
NaeI	GCCGGC	2 cut(s)	375, 438
NciI	CCSGG	2 cut(s)	26, 139
NcoI	CCATGG	2 cut(s)	381, 390
NgoMIV	GCCGGC	2 cut(s)	373, 436
NlaIII	CATG	7 cut(s)	299, 385, 394, 586, 607, 655, 670
NlaIV	GGNNCC	3 cut(s)	81, 167, 673
NmuCI	GTSAC	1 cut(s)	67
NotI	GCGGCCGC	1 cut(s)	408
NspI	RCATGY	1 cut(s)	586
PaeR7I	CTCGAG	1 cut(s)	288
PaqCI	CACCTGC	1 cut(s)	487
PcsI	WCGNNNNNNNCGW	1 cut(s)	36
PdiI	GCCGGC	2 cut(s)	375, 438
PdmI	GAANNNNTTC	1 cut(s)	615
PflFI	GACNNNGTC	1 cut(s)	26
PflMI	CCANNNNNTGG	2 cut(s)	252, 301
PfoI	TCCNGGA	1 cut(s)	245
PleI	GAGTC	3 cut(s)	49, 67, 344
PpsI	GAGTC	3 cut(s)	49, 67, 344
PpuMI	RGGWCCY	1 cut(s)	80
Psp5II	RGGWCCY	1 cut(s)	80
Psp6I	CCWGG	2 cut(s)	245, 587
PspGI	CCWGG	2 cut(s)	245, 587
PspN4I	GGNNCC	3 cut(s)	81, 167, 673
PspPI	GGNCC	2 cut(s)	80, 90
PspPPI	RGGWCCY	1 cut(s)	80
PspXI	VCTCGAGB	1 cut(s)	288
PsyI	GACNNNGTC	1 cut(s)	26
PvuII	CAGCTG	1 cut(s)	422
RsaI	GTAC	1 cut(s)	673
RsaNI	GTAC	1 cut(s)	672
SacII	CCGCGG	1 cut(s)	414
SalI	GTCGAC	1 cut(s)	29
SaqAI	TTAA	1 cut(s)	709
Sau96I	GGNCC	2 cut(s)	80, 90
SchI	GAGTC	3 cut(s)	50, 67, 344
ScrFI	CCNGG	4 cut(s)	26, 139, 247, 589
SduI	GDGCHC	2 cut(s)	231, 295
SfaNI	GCATC	2 cut(s)	345, 667
Sfr274I	CTCGAG	1 cut(s)	288
Sfr303I	CCGCGG	1 cut(s)	414
SgrBI	CCGCGG	1 cut(s)	414
SinI	GGWCC	2 cut(s)	80, 90
SlaI	CTCGAG	1 cut(s)	288
SmlI	CTYRAG	2 cut(s)	288, 544
SmoI	CTYRAG	2 cut(s)	288, 544
Sse9I	AATT	3 cut(s)	340, 655, 689
SsiI	CCGC	9 cut(s)	275, 305, 354, 407, 411, 413, 440, 462, 632
StyD4I	CCNGG	4 cut(s)	24, 137, 245, 587
StyI	CCWWGG	2 cut(s)	381, 390
TaiI	ACGT	2 cut(s)	105, 303
TaqI	TCGA	4 cut(s)	30, 44, 116, 289
TasI	AATT	3 cut(s)	340, 655, 689
TauI	GCSGC	4 cut(s)	308, 410, 413, 465
Tru1I	TTAA	1 cut(s)	709
Tru9I	TTAA	1 cut(s)	709
TscAI	CASTG	1 cut(s)	475
TseFI	GTSAC	1 cut(s)	67
TseI	GCWGC	6 cut(s)	284, 364, 419, 459, 465, 645
Tsp45I	GTSAC	1 cut(s)	67
TspDTI	ATGAA	1 cut(s)	668
TspRI	CASTG	1 cut(s)	475
Tth111I	GACNNNGTC	1 cut(s)	26
Van91I	CCANNNNNTGG	2 cut(s)	252, 301
VpaK11BI	GGWCC	2 cut(s)	80, 90
XapI	RAATTY	1 cut(s)	655
XceI	RCATGY	1 cut(s)	586
XcmI	CCANNNNNNNNNTGG	1 cut(s)	388
XhoI	CTCGAG	1 cut(s)	288
XmiI	GTMKAC	1 cut(s)	30
XmnI	GAANNNNTTC	1 cut(s)	615
ZraI	GACGTC	1 cut(s)	103

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.