Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0000958

Physical Location & Seq

Genomic Coordinates Reverse (-)

10083812 .. 10084534

Gene Structure 723 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G090500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGAACAGGTTCTTCTCTCATTTTTCTGACTCCGTGGACCAGCCCGAGTCAAGTTCGTTGTCCGACGCCACAGTCACGACTCTAAGGGCTTCTTGGTCCGACGAGGACGTCATATTGGCGTCGAGCCGACCAAAGAAGCGAGCTGGGAGGAGGGTTTTCAAGGAGACCAGGCACCCTGTTTATAGGGGCGTGAGGAGGAGGAACAATGACAAGTGGGTGTGTGAAATGAGAGAGCCCAAGAAGACGAAGTCCAGGATATGGCTCGGGACTTATCCGACGGCGGAGATGGCTGCTCGTGCCCATGACGTGGCGGCATTGGCGTTTAGAGGGAAGCTTGCCTGCCTCAACTTCCCTGACTCCGCTTGGAGGCTGCCCGTGCCGGCTTCCATGGATGCAATGGATATTCGGAGAGCAGCCGCCGAGGCAGCTGAGGGGTTTAGGCCGGTGGAGTTTGGTGGAGTGTCCAGCAGCAGCAGTGATGAGAAGGAGAGAATGGTGGTGCAGGTGGAAGAGAAGAAGAAGAAGAAGGATAGTGTGAAAATGGAAAAAAGTAGAAGCTTGAGCTTGTCCTATTGGGATGAGGAAGAAGTGTTTGACATGCCAAGGTTGCTTGATGACATGGCTCAAGGCCTTCTTCTTACTCCACCTCAATGCTTAGGTGGCGACATTTGGGATGACATGGGAACCGATGCTGATGTCAAATTGTGGAGTTTCTCCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0001558 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009889 GO:0009987 GO:0010035 GO:0010371 GO:0010468 GO:0010556 GO:0010565 GO:0010817 GO:0016143 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0019748 GO:0019757 GO:0019760 GO:0022603 GO:0022604 GO:0031323 GO:0031326 GO:0032350 GO:0040008 GO:0040034 GO:0042221 GO:0043436 GO:0043455 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0046885 GO:0046890 GO:0048506 GO:0048509 GO:0048510 GO:0048638 GO:0050789 GO:0050793 GO:0050794 GO:0050826 GO:0050896 GO:0051128 GO:0051171 GO:0051252 GO:0051510 GO:0060255 GO:0062012 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

241

Amino Acids

27.22

Weight (kDa)

7.69

Isoelectric Point (pI)

54.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000958)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12610 AT1G63030 AT1G63030
fragaria_vesca	FvH4_5g01440
malus_domestica	MD04G1067800.v1.1 MD04G1067900.v1.1 MD06G1072300.v1.1
prunus_persica	Prupe.5G089900_v2.0.a1 Prupe.5G090000_v2.0.a1 Prupe.5G090100_v2.0.a1 Prupe.5G090200_v2.0.a1 Prupe.5G090500_v2.0.a1
pyrus_communis	pycom04g06140 pycom06g07110 pycom06g07120
rosa_chinensis	RchiOBHm_Chr7g0199251 RchiOBHm_Chr7g0199301 RchiOBHm_Chr7g0199331 RchiOBHm_Chr7g0199351 RchiOBHm_Chr7g0199381
rosa_laevigata	RLG00000002739 RLG00000002740 RLG00000003796 RLG00000003799 RLG00000003801
rosa_multiflora	Rmu_co8046292.1_g000001 Rmu_co8280319.1_g000001 Rmu_sc0000855.1_g000009 Rmu_sc0000950.1_g000001 Rmu_sc0000950.1_g000005 Rmu_sc0007820.1_g000002 Rmu_sc0010720.1_g000001 Rmu_sc0039534.1_g000001
rosa_roxburghii	Rroxscaffold_3G00256750 Rroxscaffold_3G00256770 Rroxscaffold_3G00256870 Rroxscaffold_5G00359530
rosa_rugosa	Rorug07G0053500 Rorug07G0053500 Rorug07G0053500 Rorug07G0053800
rosa_samantha	Rh4BG264100 Rh7AG177700 Rh7AG177900 Rh7AG178000 Rh7AG178100 Rh7AG178600 Rh7BG181300 Rh7BG181400 Rh7BG181600 Rh7BG181900 Rh7BG182100 Rh7CG186800 Rh7CG187000 Rh7CG187200 Rh7CG187400 Rh7DG180800 Rh7DG181700
rosa_wichuraiana	Rw7G015620 Rw7G015630 Rw7G015650 Rw7G015670 Rw7G015680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	493
AasI	GACNNNNNNGTC	2 cut(s)	71, 107
AatII	GACGTC	1 cut(s)	111
Acc36I	ACCTGC	1 cut(s)	493
AccB1I	GGYRCC	1 cut(s)	171
AccB7I	CCANNNNNTGG	2 cut(s)	258, 307
AciI	CCGC	4 cut(s)	281, 311, 360, 417
AcyI	GRCGYC	3 cut(s)	66, 108, 119
AfiI	CCNNNNNNNGG	3 cut(s)	258, 307, 366
AgsI	TTSAA	1 cut(s)	160
AjiI	CACGTC	1 cut(s)	307
AjnI	CCWGG	2 cut(s)	167, 251
AluBI	AGCT	5 cut(s)	143, 334, 428, 558, 564
AluI	AGCT	5 cut(s)	143, 334, 428, 558, 564
Alw26I	GTCTC	1 cut(s)	158
Ama87I	CYCGRG	2 cut(s)	44, 263
AoxI	GGCC	2 cut(s)	440, 628
ApeKI	GCWGC	6 cut(s)	290, 370, 413, 425, 468, 471
Asp700I	GAANNNNTTC	1 cut(s)	8
AspS9I	GGNCC	2 cut(s)	37, 96
AvaI	CYCGRG	2 cut(s)	44, 263
AvaII	GGWCC	2 cut(s)	37, 96
BaeGI	GKGCMC	1 cut(s)	301
BanI	GGYRCC	1 cut(s)	171
BanII	GRGCYC	1 cut(s)	237
BauI	CACGAG	1 cut(s)	294
BbsI	GAAGAC	1 cut(s)	248
BbvCI	CCTCAGC	1 cut(s)	429
BbvI	GCAGC	6 cut(s)	277, 357, 425, 437, 480, 483
BccI	CCATC	1 cut(s)	280
BceAI	ACGGC	1 cut(s)	294
BciT130I	CCWGG	2 cut(s)	169, 253
BcoDI	GTCTC	1 cut(s)	158
BfuAI	ACCTGC	1 cut(s)	493
BglI	GCCNNNNNGGC	1 cut(s)	422
BisI	GCNGC	8 cut(s)	291, 312, 371, 414, 417, 426, 469, 472
BlsI	GCNGC	8 cut(s)	292, 313, 372, 415, 418, 427, 470, 473
Bme1390I	CCNGG	2 cut(s)	169, 253
Bme18I	GGWCC	2 cut(s)	37, 96
BmeT110I	CYCGRG	2 cut(s)	44, 263
BmgBI	CACGTC	1 cut(s)	307
BmgT120I	GGNCC	2 cut(s)	37, 96
BmiI	GGNNCC	2 cut(s)	173, 685
BmrFI	CCNGG	2 cut(s)	169, 253
BmsI	GCATC	2 cut(s)	382, 679
BpiI	GAAGAC	1 cut(s)	248
Bpu10I	CCTNAGC	2 cut(s)	429, 655
BpuEI	CTTGAG	2 cut(s)	580, 609
BsaHI	GRCGYC	3 cut(s)	66, 108, 119
BsaI	GGTCTC	1 cut(s)	158
BsaJI	CCNNGG	4 cut(s)	33, 387, 420, 602
Bsc4I	CCNNNNNNNGG	3 cut(s)	258, 307, 366
Bse118I	RCCGGY	2 cut(s)	379, 442
Bse3DI	GCAATG	1 cut(s)	402
BseBI	CCWGG	2 cut(s)	169, 253
BseDI	CCNNGG	4 cut(s)	33, 387, 420, 602
BseGI	GGATG	3 cut(s)	397, 583, 679
BseLI	CCNNNNNNNGG	3 cut(s)	258, 307, 366
BseMI	GCAATG	1 cut(s)	402
BseMII	CTCAG	1 cut(s)	420
BseRI	GAGGAG	3 cut(s)	163, 208, 211
BseSI	GKGCMC	1 cut(s)	301
BseXI	GCAGC	6 cut(s)	277, 357, 425, 437, 480, 483
BseYI	CCCAGC	1 cut(s)	143
BsgI	GTGCAG	1 cut(s)	521
BshFI	GGCC	2 cut(s)	442, 630
BshNI	GGYRCC	1 cut(s)	171
BsiHKCI	CYCGRG	2 cut(s)	44, 263
BsiSI	CCGG	2 cut(s)	380, 443
BslFI	GGGAC	1 cut(s)	280
BslI	CCNNNNNNNGG	3 cut(s)	258, 307, 366
BsmAI	GTCTC	1 cut(s)	158
BsmFI	GGGAC	1 cut(s)	280
BsnI	GGCC	2 cut(s)	442, 630
Bso31I	GGTCTC	1 cut(s)	158
BsoBI	CYCGRG	2 cut(s)	44, 263
Bsp1286I	GDGCHC	2 cut(s)	237, 301
Bsp19I	CCATGG	1 cut(s)	387
BspACI	CCGC	4 cut(s)	281, 311, 360, 417
BspANI	GGCC	2 cut(s)	442, 630
BspCNI	CTCAG	1 cut(s)	421
BspLI	GGNNCC	2 cut(s)	173, 685
BspMI	ACCTGC	1 cut(s)	493
BspT107I	GGYRCC	1 cut(s)	171
BspTNI	GGTCTC	1 cut(s)	158
BsrDI	GCAATG	1 cut(s)	402
BsrFI	RCCGGY	2 cut(s)	379, 442
BssAI	RCCGGY	2 cut(s)	379, 442
BssECI	CCNNGG	4 cut(s)	33, 387, 420, 602
BssNI	GRCGYC	3 cut(s)	66, 108, 119
BssSI	CACGAG	1 cut(s)	294
BssT1I	CCWWGG	2 cut(s)	387, 602
Bst2BI	CACGAG	1 cut(s)	294
Bst2UI	CCWGG	2 cut(s)	169, 253
Bst4CI	ACNGT	1 cut(s)	73
Bst6I	CTCTTC	1 cut(s)	504
BstACI	GRCGYC	3 cut(s)	66, 108, 119
BstC8I	GCNNGC	4 cut(s)	141, 336, 340, 381
BstDEI	CTNAG	3 cut(s)	83, 429, 655
BstDSI	CCRYGG	2 cut(s)	33, 387
BstF5I	GGATG	3 cut(s)	397, 583, 679
BstMAI	GTCTC	1 cut(s)	158
BstMWI	GCNNNNNNNGC	8 cut(s)	287, 296, 317, 376, 422, 425, 607, 660
BstNI	CCWGG	2 cut(s)	169, 253
BstNSI	RCATGY	1 cut(s)	601
BstSCI	CCNGG	2 cut(s)	167, 251
BstSLI	GKGCMC	1 cut(s)	301
BstV1I	GCAGC	6 cut(s)	277, 357, 425, 437, 480, 483
BstV2I	GAAGAC	1 cut(s)	248
BsuRI	GGCC	2 cut(s)	442, 630
BtgI	CCRYGG	2 cut(s)	33, 387
BtrI	CACGTC	1 cut(s)	307
BtsCI	GGATG	3 cut(s)	397, 583, 679
BtsI	GCAGTG	1 cut(s)	481
BtsIMutI	CAGTG	1 cut(s)	481
BveI	ACCTGC	1 cut(s)	493
Cac8I	GCNNGC	4 cut(s)	141, 336, 340, 381
Cfr10I	RCCGGY	2 cut(s)	379, 442
Cfr13I	GGNCC	2 cut(s)	37, 96
CseI	GACGC	2 cut(s)	74, 108
CviAII	CATG	5 cut(s)	302, 388, 598, 619, 679
DdeI	CTNAG	3 cut(s)	83, 429, 655
DrdI	GACNNNNNNGTC	2 cut(s)	71, 107
DseDI	GACNNNNNNGTC	2 cut(s)	71, 107
Eam1104I	CTCTTC	1 cut(s)	504
EarI	CTCTTC	1 cut(s)	504
EciI	GGCGGA	1 cut(s)	296
Eco130I	CCWWGG	2 cut(s)	387, 602
Eco147I	AGGCCT	1 cut(s)	630
Eco24I	GRGCYC	1 cut(s)	237
Eco31I	GGTCTC	1 cut(s)	158
Eco47I	GGWCC	2 cut(s)	37, 96
Eco88I	CYCGRG	2 cut(s)	44, 263
EcoRII	CCWGG	2 cut(s)	167, 251
EcoT14I	CCWWGG	2 cut(s)	387, 602
EcoT38I	GRGCYC	1 cut(s)	237
ErhI	CCWWGG	2 cut(s)	387, 602
FaeI	CATG	5 cut(s)	305, 391, 601, 622, 682
FaiI	YATR	8 cut(s)	113, 183, 259, 303, 389, 599, 620, 680
FalI	AAGNNNNNCTT	4 cut(s)	76, 108, 618, 650
FaqI	GGGAC	1 cut(s)	280
FatI	CATG	5 cut(s)	301, 387, 597, 618, 678
Fnu4HI	GCNGC	8 cut(s)	291, 312, 371, 414, 417, 426, 469, 472
FokI	GGATG	3 cut(s)	404, 590, 686
FriOI	GRGCYC	1 cut(s)	237
Fsp4HI	GCNGC	8 cut(s)	291, 312, 371, 414, 417, 426, 469, 472
GluI	GCNGC	8 cut(s)	291, 312, 371, 414, 417, 426, 469, 472
GsaI	CCCAGC	1 cut(s)	147
HaeIII	GGCC	2 cut(s)	442, 630
HapII	CCGG	2 cut(s)	380, 443
HgaI	GACGC	2 cut(s)	74, 108
Hin1I	GRCGYC	3 cut(s)	66, 108, 119
Hin1II	CATG	5 cut(s)	305, 391, 601, 622, 682
HindIII	AAGCTT	2 cut(s)	332, 556
HinfI	GANTC	4 cut(s)	29, 47, 79, 356
HpaII	CCGG	2 cut(s)	380, 443
Hpy166II	GTNNAC	1 cut(s)	37
Hpy188I	TCNGA	5 cut(s)	28, 64, 100, 276, 408
Hpy188III	TCNNGA	2 cut(s)	76, 265
Hpy8I	GTNNAC	1 cut(s)	37
Hpy99I	CGWCG	4 cut(s)	68, 104, 124, 280
HpyAV	CCTTC	3 cut(s)	478, 520, 641
HpyCH4III	ACNGT	1 cut(s)	73
HpyCH4IV	ACGT	2 cut(s)	108, 306
HpyCH4V	TGCA	2 cut(s)	395, 502
HpyF10VI	GCNNNNNNNGC	8 cut(s)	287, 296, 317, 376, 422, 425, 607, 660
HpyF3I	CTNAG	3 cut(s)	83, 429, 655
HpySE526I	ACGT	2 cut(s)	108, 306
Hsp92I	GRCGYC	3 cut(s)	66, 108, 119
Hsp92II	CATG	5 cut(s)	305, 391, 601, 622, 682
KroI	GCCGGC	1 cut(s)	379
KroNI	GCCGGC	1 cut(s)	381
Lsp1109I	GCAGC	6 cut(s)	277, 357, 425, 437, 480, 483
LweI	GCATC	2 cut(s)	382, 679
MaeII	ACGT	2 cut(s)	108, 306
MaeIII	GTNAC	1 cut(s)	73
MboII	GAAGA	9 cut(s)	4, 253, 521, 526, 529, 532, 535, 596, 626
MhlI	GDGCHC	2 cut(s)	237, 301
MluCI	AATT	2 cut(s)	701, 718
MlyI	GAGTC	4 cut(s)	23, 56, 73, 350
MmeI	TCCRAC	3 cut(s)	87, 123, 299
MroNI	GCCGGC	1 cut(s)	379
MroXI	GAANNNNTTC	1 cut(s)	8
MseI	TTAA	1 cut(s)	721
MslI	CAYNNNNRTG	1 cut(s)	649
MspA1I	CMGCKG	1 cut(s)	428
MspI	CCGG	2 cut(s)	380, 443
MspR9I	CCNGG	2 cut(s)	169, 253
MvaI	CCWGG	2 cut(s)	169, 253
MwoI	GCNNNNNNNGC	8 cut(s)	287, 296, 317, 376, 422, 425, 607, 660
NaeI	GCCGGC	1 cut(s)	381
NcoI	CCATGG	1 cut(s)	387
NgoMIV	GCCGGC	1 cut(s)	379
NlaIII	CATG	5 cut(s)	305, 391, 601, 622, 682
NlaIV	GGNNCC	2 cut(s)	173, 685
NmeAIII	GCCGAG	1 cut(s)	445
NmuCI	GTSAC	1 cut(s)	73
NspI	RCATGY	1 cut(s)	601
PaqCI	CACCTGC	1 cut(s)	493
PceI	AGGCCT	1 cut(s)	630
PdiI	GCCGGC	1 cut(s)	381
PdmI	GAANNNNTTC	1 cut(s)	8
PflFI	GACNNNGTC	1 cut(s)	247
PflMI	CCANNNNNTGG	2 cut(s)	258, 307
PfoI	TCCNGGA	1 cut(s)	251
PkrI	GCNGC	8 cut(s)	292, 313, 372, 415, 418, 427, 470, 473
PleI	GAGTC	4 cut(s)	23, 55, 73, 350
PpsI	GAGTC	4 cut(s)	23, 55, 73, 350
Psp6I	CCWGG	2 cut(s)	167, 251
PspFI	CCCAGC	1 cut(s)	143
PspGI	CCWGG	2 cut(s)	167, 251
PspN4I	GGNNCC	2 cut(s)	173, 685
PspPI	GGNCC	2 cut(s)	37, 96
PsyI	GACNNNGTC	1 cut(s)	247
PvuII	CAGCTG	1 cut(s)	428
RseI	CAYNNNNRTG	1 cut(s)	649
SaqAI	TTAA	1 cut(s)	721
SatI	GCNGC	8 cut(s)	291, 312, 371, 414, 417, 426, 469, 472
Sau96I	GGNCC	2 cut(s)	37, 96
SchI	GAGTC	4 cut(s)	23, 56, 73, 350
ScrFI	CCNGG	2 cut(s)	169, 253
SduI	GDGCHC	2 cut(s)	237, 301
SfaNI	GCATC	2 cut(s)	382, 679
SinI	GGWCC	2 cut(s)	37, 96
SmiMI	CAYNNNNRTG	1 cut(s)	649
SmlI	CTYRAG	2 cut(s)	559, 624
SmoI	CTYRAG	2 cut(s)	559, 624
Sse9I	AATT	2 cut(s)	701, 718
SseBI	AGGCCT	1 cut(s)	630
SsiI	CCGC	4 cut(s)	281, 311, 360, 417
StuI	AGGCCT	1 cut(s)	630
StyD4I	CCNGG	2 cut(s)	167, 251
StyI	CCWWGG	2 cut(s)	387, 602
TaaI	ACNGT	1 cut(s)	73
TaiI	ACGT	2 cut(s)	111, 309
TaqI	TCGA	1 cut(s)	122
TasI	AATT	2 cut(s)	701, 718
TauI	GCSGC	2 cut(s)	314, 419
Tru1I	TTAA	1 cut(s)	721
Tru9I	TTAA	1 cut(s)	721
TscAI	CASTG	1 cut(s)	481
TseFI	GTSAC	1 cut(s)	73
TseI	GCWGC	6 cut(s)	290, 370, 413, 425, 468, 471
Tsp45I	GTSAC	1 cut(s)	73
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	22
TspRI	CASTG	1 cut(s)	481
Tth111I	GACNNNGTC	1 cut(s)	247
Van91I	CCANNNNNTGG	2 cut(s)	258, 307
VpaK11BI	GGWCC	2 cut(s)	37, 96
XceI	RCATGY	1 cut(s)	601
XcmI	CCANNNNNNNNNTGG	1 cut(s)	394
XmnI	GAANNNNTTC	1 cut(s)	8
ZraI	GACGTC	1 cut(s)	109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.