Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0000958

Physical Location & Seq

Genomic Coordinates Forward (+)

15701846 .. 15702556

Gene Structure 711 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG178000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGAATAGCTCCAATTACCAGCTCTCAGACTCCAACCAGAAAAGCCTCGAATCAGTCTCCTCCATCGACAAGCCCGAGTCGTCTTCCTTATCTGACACGAGCTTCACGACTCGCCGTTCACCTCATTCCAACGGAGCGGTGATACTTGCTTCGAGCAGGCCGAAGAAGCGAGCCGGTAGGCGAGTGTTCAAGGAGACTCGCCACCCGGTCTACCGCTGTGTGAGGCGCAGGAACAATAACAAGTGGGTGTGCGAGGTCAGGGAGCCGAACAAAAAGACCAGAATTTGGCTCGGGACGTACCCAACTCTTGAGATGGCCGCTCGGGCACACGATGTGGCGGCGTTGGCCCTTAGGGGGAAGCAGGCATGCCTCAATTTTGCTGATTCCGTGTGGCGGTTGCCCATTCCGGCTTCTAAAGACCAGCTCGATATTCGCAGGGCCGCCGCCGAGGCTGCTGAGACATTTCGACCTGAGGAGTTCGGCGGCGTCTCGAGCAGCTGTGACGACAATGAGAGGGAATATGAGGATGAGAATGTTGAGATGGACAACATTCGATTCCCTCTCATTGTCGTCACAGCTGCTCGAGACGCCGCCGAACTCCTCAGGTCGAAATGTCTCAGCAGCCACGTCATTACTTGGACACTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0001558 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009889 GO:0009987 GO:0010035 GO:0010371 GO:0010468 GO:0010556 GO:0010565 GO:0010817 GO:0016143 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0019748 GO:0019757 GO:0019760 GO:0022603 GO:0022604 GO:0031323 GO:0031326 GO:0032350 GO:0040008 GO:0040034 GO:0042221 GO:0043436 GO:0043455 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0046885 GO:0046890 GO:0048506 GO:0048509 GO:0048510 GO:0048638 GO:0050789 GO:0050793 GO:0050794 GO:0050826 GO:0050896 GO:0051128 GO:0051171 GO:0051252 GO:0051510 GO:0060255 GO:0062012 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

215

Amino Acids

24.29

Weight (kDa)

9.18

Isoelectric Point (pI)

60.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	69 - 119	2.9e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000958)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12610 AT1G63030 AT1G63030
fragaria_vesca	FvH4_5g01440
malus_domestica	MD04G1067800.v1.1 MD04G1067900.v1.1 MD06G1072300.v1.1
prunus_persica	Prupe.5G089900_v2.0.a1 Prupe.5G090000_v2.0.a1 Prupe.5G090100_v2.0.a1 Prupe.5G090200_v2.0.a1 Prupe.5G090500_v2.0.a1
pyrus_communis	pycom04g06140 pycom06g07110 pycom06g07120
rosa_chinensis	RchiOBHm_Chr7g0199251 RchiOBHm_Chr7g0199301 RchiOBHm_Chr7g0199331 RchiOBHm_Chr7g0199351 RchiOBHm_Chr7g0199381
rosa_laevigata	RLG00000002739 RLG00000002740 RLG00000003796 RLG00000003799 RLG00000003801
rosa_multiflora	Rmu_co8046292.1_g000001 Rmu_co8280319.1_g000001 Rmu_sc0000855.1_g000009 Rmu_sc0000950.1_g000001 Rmu_sc0000950.1_g000005 Rmu_sc0007820.1_g000002 Rmu_sc0010720.1_g000001 Rmu_sc0039534.1_g000001
rosa_roxburghii	Rroxscaffold_3G00256750 Rroxscaffold_3G00256770 Rroxscaffold_3G00256870 Rroxscaffold_5G00359530
rosa_rugosa	Rorug07G0053500 Rorug07G0053500 Rorug07G0053500 Rorug07G0053800
rosa_samantha	Rh4BG264100 Rh7AG177700 Rh7AG177900 Rh7AG178000 Rh7AG178100 Rh7AG178600 Rh7BG181300 Rh7BG181400 Rh7BG181600 Rh7BG181900 Rh7BG182100 Rh7CG186800 Rh7CG187000 Rh7CG187200 Rh7CG187400 Rh7DG180800 Rh7DG181700
rosa_wichuraiana	Rw7G015620 Rw7G015630 Rw7G015650 Rw7G015670 Rw7G015680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	285
AccBSI	CCGCTC	2 cut(s)	137, 320
AccI	GTMKAC	1 cut(s)	210
AciI	CCGC	9 cut(s)	137, 214, 318, 338, 394, 441, 444, 483, 591
AcoI	YGGCCR	1 cut(s)	315
AcsI	RAATTY	1 cut(s)	282
AcyI	GRCGYC	2 cut(s)	486, 588
AdeI	CACNNNGTG	1 cut(s)	334
AfaI	GTAC	1 cut(s)	299
AfiI	CCNNNNNNNGG	3 cut(s)	285, 354, 393
AgsI	TTSAA	1 cut(s)	190
AjiI	CACGTC	1 cut(s)	628
AluBI	AGCT	6 cut(s)	9, 22, 102, 424, 498, 578
AluI	AGCT	6 cut(s)	9, 22, 102, 424, 498, 578
Alw26I	GTCTC	6 cut(s)	61, 188, 452, 493, 579, 620
Ama87I	CYCGRG	5 cut(s)	74, 290, 321, 490, 582
AoxI	GGCC	4 cut(s)	158, 315, 345, 438
ApeKI	GCWGC	4 cut(s)	452, 495, 578, 621
ApoI	RAATTY	1 cut(s)	282
AspLEI	GCGC	1 cut(s)	228
AspS9I	GGNCC	2 cut(s)	346, 438
AsuC2I	CCSGG	1 cut(s)	206
AsuHPI	GGTGA	2 cut(s)	111, 151
AvaI	CYCGRG	5 cut(s)	74, 290, 321, 490, 582
AxyI	CCTNAGG	3 cut(s)	350, 471, 602
BaeGI	GKGCMC	1 cut(s)	328
BauI	CACGAG	1 cut(s)	97
BbsI	GAAGAC	1 cut(s)	75
BbvI	GCAGC	4 cut(s)	439, 507, 565, 633
BccI	CCATC	3 cut(s)	71, 307, 535
BceAI	ACGGC	1 cut(s)	99
BcnI	CCSGG	1 cut(s)	206
BcoDI	GTCTC	6 cut(s)	61, 188, 452, 493, 579, 620
BglI	GCCNNNNNGGC	2 cut(s)	323, 449
Bme1390I	CCNGG	1 cut(s)	206
BmeT110I	CYCGRG	5 cut(s)	74, 290, 321, 490, 582
BmgBI	CACGTC	1 cut(s)	628
BmgT120I	GGNCC	2 cut(s)	346, 438
BmiI	GGNNCC	1 cut(s)	264
BmrFI	CCNGG	1 cut(s)	206
BpiI	GAAGAC	1 cut(s)	75
BpuEI	CTTGAG	1 cut(s)	329
BpuMI	CCSGG	1 cut(s)	206
BsaHI	GRCGYC	2 cut(s)	486, 588
BsaJI	CCNNGG	1 cut(s)	447
Bsc4I	CCNNNNNNNGG	3 cut(s)	285, 354, 393
Bse118I	RCCGGY	1 cut(s)	173
Bse21I	CCTNAGG	3 cut(s)	350, 471, 602
BseDI	CCNNGG	1 cut(s)	447
BseGI	GGATG	1 cut(s)	532
BseLI	CCNNNNNNNGG	3 cut(s)	285, 354, 393
BseMII	CTCAG	5 cut(s)	39, 447, 462, 616, 631
BseRI	GAGGAG	3 cut(s)	49, 488, 590
BseSI	GKGCMC	1 cut(s)	328
BseXI	GCAGC	4 cut(s)	439, 507, 565, 633
BshFI	GGCC	4 cut(s)	160, 317, 347, 440
BsiHKCI	CYCGRG	5 cut(s)	74, 290, 321, 490, 582
BsiSI	CCGG	3 cut(s)	174, 206, 407
BslFI	GGGAC	1 cut(s)	307
BslI	CCNNNNNNNGG	3 cut(s)	285, 354, 393
BsmAI	GTCTC	6 cut(s)	61, 188, 452, 493, 579, 620
BsmBI	CGTCTC	2 cut(s)	493, 579
BsmFI	GGGAC	1 cut(s)	307
BsnI	GGCC	4 cut(s)	160, 317, 347, 440
BsoBI	CYCGRG	5 cut(s)	74, 290, 321, 490, 582
Bsp1286I	GDGCHC	1 cut(s)	328
BspACI	CCGC	9 cut(s)	137, 214, 318, 338, 394, 441, 444, 483, 591
BspANI	GGCC	4 cut(s)	160, 317, 347, 440
BspCNI	CTCAG	5 cut(s)	38, 448, 463, 615, 630
BspLI	GGNNCC	1 cut(s)	264
BsrBI	CCGCTC	2 cut(s)	137, 320
BsrFI	RCCGGY	1 cut(s)	173
BssAI	RCCGGY	1 cut(s)	173
BssECI	CCNNGG	1 cut(s)	447
BssNI	GRCGYC	2 cut(s)	486, 588
BssSI	CACGAG	1 cut(s)	97
Bst2BI	CACGAG	1 cut(s)	97
BstACI	GRCGYC	2 cut(s)	486, 588
BstC8I	GCNNGC	4 cut(s)	158, 171, 363, 367
BstDEI	CTNAG	6 cut(s)	25, 350, 456, 471, 602, 617
BstF5I	GGATG	1 cut(s)	532
BstHHI	GCGC	1 cut(s)	228
BstMAI	GTCTC	6 cut(s)	61, 188, 452, 493, 579, 620
BstMWI	GCNNNNNNNGC	7 cut(s)	166, 323, 344, 449, 452, 492, 587
BstNSI	RCATGY	1 cut(s)	369
BstSCI	CCNGG	1 cut(s)	204
BstSLI	GKGCMC	1 cut(s)	328
BstV1I	GCAGC	4 cut(s)	439, 507, 565, 633
BstV2I	GAAGAC	1 cut(s)	75
Bsu36I	CCTNAGG	3 cut(s)	350, 471, 602
BsuRI	GGCC	4 cut(s)	160, 317, 347, 440
BtrI	CACGTC	1 cut(s)	628
BtsCI	GGATG	1 cut(s)	532
Cac8I	GCNNGC	4 cut(s)	158, 171, 363, 367
CfoI	GCGC	1 cut(s)	228
Cfr10I	RCCGGY	1 cut(s)	173
Cfr13I	GGNCC	2 cut(s)	346, 438
CseI	GACGC	2 cut(s)	475, 596
Csp6I	GTAC	1 cut(s)	298
CviAII	CATG	1 cut(s)	366
CviQI	GTAC	1 cut(s)	298
DdeI	CTNAG	6 cut(s)	25, 350, 456, 471, 602, 617
DraIII	CACNNNGTG	1 cut(s)	334
EaeI	YGGCCR	1 cut(s)	315
Eco81I	CCTNAGG	3 cut(s)	350, 471, 602
Eco88I	CYCGRG	5 cut(s)	74, 290, 321, 490, 582
Esp3I	CGTCTC	2 cut(s)	493, 579
FaeI	CATG	1 cut(s)	369
FaiI	YATR	3 cut(s)	367, 522, 646
FaqI	GGGAC	1 cut(s)	307
FatI	CATG	1 cut(s)	365
FblI	GTMKAC	1 cut(s)	210
FokI	GGATG	1 cut(s)	539
GlaI	GCGC	1 cut(s)	227
HaeIII	GGCC	4 cut(s)	160, 317, 347, 440
HapII	CCGG	3 cut(s)	174, 206, 407
HgaI	GACGC	2 cut(s)	475, 596
HhaI	GCGC	1 cut(s)	228
Hin1I	GRCGYC	2 cut(s)	486, 588
Hin1II	CATG	1 cut(s)	369
Hin6I	GCGC	1 cut(s)	226
HinP1I	GCGC	1 cut(s)	226
HinfI	GANTC	7 cut(s)	29, 50, 77, 109, 196, 383, 555
HpaII	CCGG	3 cut(s)	174, 206, 407
HphI	GGTGA	2 cut(s)	111, 151
Hpy166II	GTNNAC	2 cut(s)	119, 211
Hpy188I	TCNGA	2 cut(s)	28, 94
Hpy188III	TCNNGA	5 cut(s)	106, 292, 308, 490, 584
Hpy8I	GTNNAC	2 cut(s)	119, 211
HpyCH4IV	ACGT	2 cut(s)	296, 627
HpyF10VI	GCNNNNNNNGC	7 cut(s)	166, 323, 344, 449, 452, 492, 587
HpyF3I	CTNAG	6 cut(s)	25, 350, 456, 471, 602, 617
HpySE526I	ACGT	2 cut(s)	296, 627
Hsp92I	GRCGYC	2 cut(s)	486, 588
Hsp92II	CATG	1 cut(s)	369
HspAI	GCGC	1 cut(s)	226
LmnI	GCTCC	3 cut(s)	14, 134, 262
Lsp1109I	GCAGC	4 cut(s)	439, 507, 565, 633
MaeII	ACGT	2 cut(s)	296, 627
MaeIII	GTNAC	2 cut(s)	500, 571
MbiI	CCGCTC	2 cut(s)	137, 320
MboII	GAAGA	2 cut(s)	75, 175
MhlI	GDGCHC	1 cut(s)	328
MluCI	AATT	3 cut(s)	13, 282, 373
MlyI	GAGTC	4 cut(s)	23, 86, 103, 190
MmeI	TCCRAC	2 cut(s)	57, 153
MspA1I	CMGCKG	3 cut(s)	216, 498, 578
MspI	CCGG	3 cut(s)	174, 206, 407
MspR9I	CCNGG	1 cut(s)	206
MwoI	GCNNNNNNNGC	7 cut(s)	166, 323, 344, 449, 452, 492, 587
NciI	CCSGG	1 cut(s)	206
NlaIII	CATG	1 cut(s)	369
NlaIV	GGNNCC	1 cut(s)	264
NmeAIII	GCCGAG	1 cut(s)	472
NmuCI	GTSAC	2 cut(s)	500, 571
NspI	RCATGY	1 cut(s)	369
PaeI	GCATGC	1 cut(s)	369
PaeR7I	CTCGAG	2 cut(s)	490, 582
PcsI	WCGNNNNNNNCGW	3 cut(s)	72, 104, 158
PfeI	GAWTC	3 cut(s)	50, 383, 555
PflMI	CCANNNNNTGG	1 cut(s)	285
PleI	GAGTC	4 cut(s)	23, 85, 103, 190
PpsI	GAGTC	4 cut(s)	23, 85, 103, 190
PspN4I	GGNNCC	1 cut(s)	264
PspPI	GGNCC	2 cut(s)	346, 438
PvuII	CAGCTG	2 cut(s)	498, 578
RsaI	GTAC	1 cut(s)	299
RsaNI	GTAC	1 cut(s)	298
Sau96I	GGNCC	2 cut(s)	346, 438
SchI	GAGTC	4 cut(s)	23, 86, 103, 190
ScrFI	CCNGG	1 cut(s)	206
SduI	GDGCHC	1 cut(s)	328
Sfr274I	CTCGAG	2 cut(s)	490, 582
SlaI	CTCGAG	2 cut(s)	490, 582
SmlI	CTYRAG	3 cut(s)	308, 490, 582
SmoI	CTYRAG	3 cut(s)	308, 490, 582
SphI	GCATGC	1 cut(s)	369
Sse9I	AATT	3 cut(s)	13, 282, 373
SsiI	CCGC	9 cut(s)	137, 214, 318, 338, 394, 441, 444, 483, 591
StyD4I	CCNGG	1 cut(s)	204
TaiI	ACGT	2 cut(s)	299, 630
TaqI	TCGA	9 cut(s)	48, 66, 152, 426, 466, 491, 553, 583, 608
TasI	AATT	3 cut(s)	13, 282, 373
TauI	GCSGC	6 cut(s)	320, 341, 443, 446, 486, 593
TfiI	GAWTC	3 cut(s)	50, 383, 555
TseFI	GTSAC	2 cut(s)	500, 571
TseI	GCWGC	4 cut(s)	452, 495, 578, 621
Tsp45I	GTSAC	2 cut(s)	500, 571
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	2 cut(s)	147, 376
Van91I	CCANNNNNTGG	1 cut(s)	285
XapI	RAATTY	1 cut(s)	282
XceI	RCATGY	1 cut(s)	369
XhoI	CTCGAG	2 cut(s)	490, 582
XmiI	GTMKAC	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.