Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0000958

Physical Location & Seq

Genomic Coordinates Forward (+)

15664265 .. 15665223

Gene Structure 959 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG177700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGTATATAAAGCCCTCCCACTCGTCGTTTTTGTTTCATCAGCCTTTTCCCCAACTCACACTACTCTCTCTAGTCTCAGCCAAGAAAACCAAAATGAATAGCTCCAATTACCAGCTCTCAGACTCCAACCAGCAAAGCCTCGAATCAGTCTCCTCCATCGACAAGCCCGAGTCGTCTTCCTTATCTGACACGAGCATCACGACTAGCCGTTCACCTCATTCCGACGGAGCGGTGATACTAGCTTCGAGCAGGCCGAAGAAGCGAGCCGGTAGGCGAGTGTTCAAGGAGACTCGCCACCCGGTCTACCGCGGCGTGAGGCGCAGGAACAATAACAAGTGGGTGTGCGAGGTCAGGGAGCCGAACAAAAAGACCAGAATTTGGCTCGGGACGTACCCAACTCTTGAGATGGCCGCTCGGGCACACGATGTGGCGGCGTTGGCCCTTAGGGGGAAGCAGGCATGCCTCAATTTTGCTGATTCCGTGTGGCGGTTGCCCATTCCGGCTTCTAAAGACCAGCTCGACATTCGCAGGGCCGCCGCCGAGGCTGCTGAGACATTTCGACCTGAGGAGTTCGGCGGCGTCTCGAGCAGCTGTGACGACAACGAGAGGGAATATGAGGATGAGAATGTTGAGATGGACAACGAGAAGAAGAATGATGGCTTGTACGAGGATGAAGAGGCGCTCTTCGACATGCCCAGATTGCTGACTAGCATGGCGGAGGGTCCACTGCTCTCTCCGCCACGTCATTACTTGGACAGTATGAACTGGGCAGACGATCAGGTGGAAAGCGAGTCAAATTTCAGCTTGTGGAGCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0001558 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009889 GO:0009987 GO:0010035 GO:0010371 GO:0010468 GO:0010556 GO:0010565 GO:0010817 GO:0016143 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0019748 GO:0019757 GO:0019760 GO:0022603 GO:0022604 GO:0031323 GO:0031326 GO:0032350 GO:0040008 GO:0040034 GO:0042221 GO:0043436 GO:0043455 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0046885 GO:0046890 GO:0048506 GO:0048509 GO:0048510 GO:0048638 GO:0050789 GO:0050793 GO:0050794 GO:0050826 GO:0050896 GO:0051128 GO:0051171 GO:0051252 GO:0051510 GO:0060255 GO:0062012 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

272

Amino Acids

30.87

Weight (kDa)

5.94

Isoelectric Point (pI)

62.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	100 - 150	5.9e-16	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000958)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12610 AT1G63030 AT1G63030
fragaria_vesca	FvH4_5g01440
malus_domestica	MD04G1067800.v1.1 MD04G1067900.v1.1 MD06G1072300.v1.1
prunus_persica	Prupe.5G089900_v2.0.a1 Prupe.5G090000_v2.0.a1 Prupe.5G090100_v2.0.a1 Prupe.5G090200_v2.0.a1 Prupe.5G090500_v2.0.a1
pyrus_communis	pycom04g06140 pycom06g07110 pycom06g07120
rosa_chinensis	RchiOBHm_Chr7g0199251 RchiOBHm_Chr7g0199301 RchiOBHm_Chr7g0199331 RchiOBHm_Chr7g0199351 RchiOBHm_Chr7g0199381
rosa_laevigata	RLG00000002739 RLG00000002740 RLG00000003796 RLG00000003799 RLG00000003801
rosa_multiflora	Rmu_co8046292.1_g000001 Rmu_co8280319.1_g000001 Rmu_sc0000855.1_g000009 Rmu_sc0000950.1_g000001 Rmu_sc0000950.1_g000005 Rmu_sc0007820.1_g000002 Rmu_sc0010720.1_g000001 Rmu_sc0039534.1_g000001
rosa_roxburghii	Rroxscaffold_3G00256750 Rroxscaffold_3G00256770 Rroxscaffold_3G00256870 Rroxscaffold_5G00359530
rosa_rugosa	Rorug07G0053500 Rorug07G0053500 Rorug07G0053500 Rorug07G0053800
rosa_samantha	Rh4BG264100 Rh7AG177700 Rh7AG177900 Rh7AG178000 Rh7AG178100 Rh7AG178600 Rh7BG181300 Rh7BG181400 Rh7BG181600 Rh7BG181900 Rh7BG182100 Rh7CG186800 Rh7CG187000 Rh7CG187200 Rh7CG187400 Rh7DG180800 Rh7DG181700
rosa_wichuraiana	Rw7G015620 Rw7G015630 Rw7G015650 Rw7G015670 Rw7G015680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	378
AccBSI	CCGCTC	2 cut(s)	230, 413
AccI	GTMKAC	1 cut(s)	303
AccII	CGCG	1 cut(s)	309
AcoI	YGGCCR	1 cut(s)	408
AcsI	RAATTY	2 cut(s)	375, 796
AcyI	GRCGYC	1 cut(s)	579
AdeI	CACNNNGTG	1 cut(s)	427
AfaI	GTAC	2 cut(s)	392, 665
AfiI	CCNNNNNNNGG	3 cut(s)	378, 447, 486
AgsI	TTSAA	1 cut(s)	283
AjiI	CACGTC	1 cut(s)	743
AluBI	AGCT	7 cut(s)	102, 115, 242, 517, 591, 804, 813
AluI	AGCT	7 cut(s)	102, 115, 242, 517, 591, 804, 813
Alw26I	GTCTC	5 cut(s)	79, 154, 281, 545, 586
Ama87I	CYCGRG	4 cut(s)	167, 383, 414, 583
AoxI	GGCC	4 cut(s)	251, 408, 438, 531
ApeKI	GCWGC	2 cut(s)	545, 588
ApoI	RAATTY	2 cut(s)	375, 796
AspLEI	GCGC	2 cut(s)	321, 682
AspS9I	GGNCC	3 cut(s)	439, 531, 722
AsuC2I	CCSGG	1 cut(s)	299
AsuHPI	GGTGA	2 cut(s)	204, 244
AvaI	CYCGRG	4 cut(s)	167, 383, 414, 583
AvaII	GGWCC	1 cut(s)	722
AxyI	CCTNAGG	2 cut(s)	443, 564
BaeGI	GKGCMC	1 cut(s)	421
BauI	CACGAG	1 cut(s)	190
BbsI	GAAGAC	1 cut(s)	168
BbvI	GCAGC	2 cut(s)	532, 600
BccI	CCATC	4 cut(s)	164, 400, 628, 650
BceAI	ACGGC	1 cut(s)	192
BcnI	CCSGG	1 cut(s)	299
BcoDI	GTCTC	5 cut(s)	79, 154, 281, 545, 586
BfaI	CTAG	4 cut(s)	71, 204, 239, 708
BfoI	RGCGCY	1 cut(s)	683
BglI	GCCNNNNNGGC	2 cut(s)	416, 542
BisI	GCNGC	8 cut(s)	310, 411, 432, 534, 537, 546, 577, 589
BlsI	GCNGC	8 cut(s)	311, 412, 433, 535, 538, 547, 578, 590
Bme1390I	CCNGG	1 cut(s)	299
Bme18I	GGWCC	1 cut(s)	722
BmeT110I	CYCGRG	4 cut(s)	167, 383, 414, 583
BmgBI	CACGTC	1 cut(s)	743
BmgT120I	GGNCC	3 cut(s)	439, 531, 722
BmiI	GGNNCC	2 cut(s)	357, 723
BmrFI	CCNGG	1 cut(s)	299
BmrI	ACTGGG	1 cut(s)	775
BmsI	GCATC	1 cut(s)	204
BmuI	ACTGGG	1 cut(s)	775
BpiI	GAAGAC	1 cut(s)	168
BpuEI	CTTGAG	1 cut(s)	422
BpuMI	CCSGG	1 cut(s)	299
BsaHI	GRCGYC	1 cut(s)	579
BsaJI	CCNNGG	2 cut(s)	307, 540
Bsc4I	CCNNNNNNNGG	3 cut(s)	378, 447, 486
Bse118I	RCCGGY	1 cut(s)	266
Bse1I	ACTGG	1 cut(s)	770
Bse21I	CCTNAGG	2 cut(s)	443, 564
BseDI	CCNNGG	2 cut(s)	307, 540
BseGI	GGATG	2 cut(s)	625, 676
BseLI	CCNNNNNNNGG	3 cut(s)	378, 447, 486
BseMII	CTCAG	4 cut(s)	90, 132, 540, 555
BseNI	ACTGG	1 cut(s)	770
BseRI	GAGGAG	2 cut(s)	142, 581
BseSI	GKGCMC	1 cut(s)	421
BseXI	GCAGC	2 cut(s)	532, 600
Bsh1236I	CGCG	1 cut(s)	309
BshFI	GGCC	4 cut(s)	253, 410, 440, 533
BsiHKCI	CYCGRG	4 cut(s)	167, 383, 414, 583
BsiSI	CCGG	3 cut(s)	267, 299, 500
BslFI	GGGAC	1 cut(s)	400
BslI	CCNNNNNNNGG	3 cut(s)	378, 447, 486
BsmAI	GTCTC	5 cut(s)	79, 154, 281, 545, 586
BsmBI	CGTCTC	1 cut(s)	586
BsmFI	GGGAC	1 cut(s)	400
BsnI	GGCC	4 cut(s)	253, 410, 440, 533
BsoBI	CYCGRG	4 cut(s)	167, 383, 414, 583
Bsp1286I	GDGCHC	1 cut(s)	421
Bsp143I	GATC	1 cut(s)	775
BspANI	GGCC	4 cut(s)	253, 410, 440, 533
BspCNI	CTCAG	4 cut(s)	89, 131, 541, 556
BspFNI	CGCG	1 cut(s)	309
BspLI	GGNNCC	2 cut(s)	357, 723
BspQI	GCTCTTC	1 cut(s)	689
BsrBI	CCGCTC	2 cut(s)	230, 413
BsrFI	RCCGGY	1 cut(s)	266
BsrI	ACTGG	1 cut(s)	770
BssAI	RCCGGY	1 cut(s)	266
BssECI	CCNNGG	2 cut(s)	307, 540
BssMI	GATC	1 cut(s)	775
BssNI	GRCGYC	1 cut(s)	579
BssSI	CACGAG	1 cut(s)	190
Bst2BI	CACGAG	1 cut(s)	190
Bst4CI	ACNGT	1 cut(s)	758
Bst6I	CTCTTC	2 cut(s)	669, 689
BstACI	GRCGYC	1 cut(s)	579
BstC8I	GCNNGC	4 cut(s)	251, 264, 456, 460
BstDEI	CTNAG	5 cut(s)	76, 118, 443, 549, 564
BstDSI	CCRYGG	1 cut(s)	307
BstF5I	GGATG	2 cut(s)	625, 676
BstFNI	CGCG	1 cut(s)	309
BstH2I	RGCGCY	1 cut(s)	683
BstHHI	GCGC	2 cut(s)	321, 682
BstKTI	GATC	1 cut(s)	778
BstMAI	GTCTC	5 cut(s)	79, 154, 281, 545, 586
BstMBI	GATC	1 cut(s)	775
BstNSI	RCATGY	2 cut(s)	462, 694
BstSCI	CCNGG	1 cut(s)	297
BstSLI	GKGCMC	1 cut(s)	421
BstUI	CGCG	1 cut(s)	309
BstV1I	GCAGC	2 cut(s)	532, 600
BstV2I	GAAGAC	1 cut(s)	168
Bsu36I	CCTNAGG	2 cut(s)	443, 564
BsuRI	GGCC	4 cut(s)	253, 410, 440, 533
BtgI	CCRYGG	1 cut(s)	307
BtrI	CACGTC	1 cut(s)	743
BtsCI	GGATG	2 cut(s)	625, 676
BtsI	GCAGTG	1 cut(s)	725
BtsIMutI	CAGTG	1 cut(s)	725
Cac8I	GCNNGC	4 cut(s)	251, 264, 456, 460
CfoI	GCGC	2 cut(s)	321, 682
Cfr10I	RCCGGY	1 cut(s)	266
Cfr13I	GGNCC	3 cut(s)	439, 531, 722
Cfr42I	CCGCGG	1 cut(s)	310
CseI	GACGC	1 cut(s)	568
Csp6I	GTAC	2 cut(s)	391, 664
CviAII	CATG	3 cut(s)	459, 691, 712
CviQI	GTAC	2 cut(s)	391, 664
DdeI	CTNAG	5 cut(s)	76, 118, 443, 549, 564
DpnI	GATC	1 cut(s)	777
DpnII	GATC	1 cut(s)	775
DraIII	CACNNNGTG	1 cut(s)	427
EaeI	YGGCCR	1 cut(s)	408
Eam1104I	CTCTTC	2 cut(s)	669, 689
EarI	CTCTTC	2 cut(s)	669, 689
EciI	GGCGGA	2 cut(s)	726, 731
Eco47I	GGWCC	1 cut(s)	722
Eco81I	CCTNAGG	2 cut(s)	443, 564
Eco88I	CYCGRG	4 cut(s)	167, 383, 414, 583
Esp3I	CGTCTC	1 cut(s)	586
FaeI	CATG	3 cut(s)	462, 694, 715
FaiI	YATR	7 cut(s)	6, 8, 460, 615, 692, 713, 761
FaqI	GGGAC	1 cut(s)	400
FatI	CATG	3 cut(s)	458, 690, 711
FblI	GTMKAC	1 cut(s)	303
Fnu4HI	GCNGC	8 cut(s)	310, 411, 432, 534, 537, 546, 577, 589
FokI	GGATG	2 cut(s)	632, 683
Fsp4HI	GCNGC	8 cut(s)	310, 411, 432, 534, 537, 546, 577, 589
FspBI	CTAG	4 cut(s)	71, 204, 239, 708
GlaI	GCGC	2 cut(s)	320, 681
GluI	GCNGC	8 cut(s)	310, 411, 432, 534, 537, 546, 577, 589
HaeII	RGCGCY	1 cut(s)	683
HaeIII	GGCC	4 cut(s)	253, 410, 440, 533
HapII	CCGG	3 cut(s)	267, 299, 500
HgaI	GACGC	1 cut(s)	568
HhaI	GCGC	2 cut(s)	321, 682
Hin1I	GRCGYC	1 cut(s)	579
Hin1II	CATG	3 cut(s)	462, 694, 715
Hin6I	GCGC	2 cut(s)	319, 680
HinP1I	GCGC	2 cut(s)	319, 680
HinfI	GANTC	6 cut(s)	122, 143, 170, 289, 476, 791
HpaII	CCGG	3 cut(s)	267, 299, 500
HphI	GGTGA	2 cut(s)	204, 244
Hpy166II	GTNNAC	3 cut(s)	212, 304, 725
Hpy188I	TCNGA	3 cut(s)	121, 187, 223
Hpy188III	TCNNGA	4 cut(s)	199, 385, 401, 583
Hpy8I	GTNNAC	3 cut(s)	212, 304, 725
Hpy99I	CGWCG	2 cut(s)	28, 227
HpyCH4III	ACNGT	1 cut(s)	758
HpyCH4IV	ACGT	2 cut(s)	389, 742
HpyF3I	CTNAG	5 cut(s)	76, 118, 443, 549, 564
HpySE526I	ACGT	2 cut(s)	389, 742
Hsp92I	GRCGYC	1 cut(s)	579
Hsp92II	CATG	3 cut(s)	462, 694, 715
HspAI	GCGC	2 cut(s)	319, 680
KspI	CCGCGG	1 cut(s)	310
Kzo9I	GATC	1 cut(s)	775
LguI	GCTCTTC	1 cut(s)	689
LmnI	GCTCC	4 cut(s)	107, 227, 355, 810
Lsp1109I	GCAGC	2 cut(s)	532, 600
LweI	GCATC	1 cut(s)	204
MaeI	CTAG	4 cut(s)	71, 204, 239, 708
MaeII	ACGT	2 cut(s)	389, 742
MaeIII	GTNAC	1 cut(s)	593
MalI	GATC	1 cut(s)	777
MbiI	CCGCTC	2 cut(s)	230, 413
MboI	GATC	1 cut(s)	775
MboII	GAAGA	6 cut(s)	168, 268, 658, 661, 676, 686
MhlI	GDGCHC	1 cut(s)	421
MluCI	AATT	4 cut(s)	106, 375, 466, 796
MlyI	GAGTC	4 cut(s)	116, 179, 283, 800
MmeI	TCCRAC	2 cut(s)	150, 246
MspA1I	CMGCKG	2 cut(s)	309, 591
MspI	CCGG	3 cut(s)	267, 299, 500
MspR9I	CCNGG	1 cut(s)	299
MvnI	CGCG	1 cut(s)	309
NciI	CCSGG	1 cut(s)	299
NdeII	GATC	1 cut(s)	775
NlaIII	CATG	3 cut(s)	462, 694, 715
NlaIV	GGNNCC	2 cut(s)	357, 723
NmeAIII	GCCGAG	1 cut(s)	565
NmuCI	GTSAC	1 cut(s)	593
NspI	RCATGY	2 cut(s)	462, 694
PaeI	GCATGC	1 cut(s)	462
PaeR7I	CTCGAG	1 cut(s)	583
PciSI	GCTCTTC	1 cut(s)	689
PcsI	WCGNNNNNNNCGW	3 cut(s)	165, 197, 251
PfeI	GAWTC	2 cut(s)	143, 476
PflMI	CCANNNNNTGG	1 cut(s)	378
PkrI	GCNGC	8 cut(s)	311, 412, 433, 535, 538, 547, 578, 590
PleI	GAGTC	4 cut(s)	116, 178, 283, 799
PpsI	GAGTC	4 cut(s)	116, 178, 283, 799
PspN4I	GGNNCC	2 cut(s)	357, 723
PspPI	GGNCC	3 cut(s)	439, 531, 722
PvuII	CAGCTG	1 cut(s)	591
RsaI	GTAC	2 cut(s)	392, 665
RsaNI	GTAC	2 cut(s)	391, 664
SacII	CCGCGG	1 cut(s)	310
SapI	GCTCTTC	1 cut(s)	689
SatI	GCNGC	8 cut(s)	310, 411, 432, 534, 537, 546, 577, 589
Sau3AI	GATC	1 cut(s)	775
Sau96I	GGNCC	3 cut(s)	439, 531, 722
SchI	GAGTC	4 cut(s)	116, 179, 283, 800
ScrFI	CCNGG	1 cut(s)	299
SduI	GDGCHC	1 cut(s)	421
SfaNI	GCATC	1 cut(s)	204
Sfr274I	CTCGAG	1 cut(s)	583
Sfr303I	CCGCGG	1 cut(s)	310
SgrBI	CCGCGG	1 cut(s)	310
SinI	GGWCC	1 cut(s)	722
SlaI	CTCGAG	1 cut(s)	583
SmlI	CTYRAG	2 cut(s)	401, 583
SmoI	CTYRAG	2 cut(s)	401, 583
SphI	GCATGC	1 cut(s)	462
Sse9I	AATT	4 cut(s)	106, 375, 466, 796
SspMI	CTAG	4 cut(s)	71, 204, 239, 708
StyD4I	CCNGG	1 cut(s)	297
TaaI	ACNGT	1 cut(s)	758
TaiI	ACGT	2 cut(s)	392, 745
TaqI	TCGA	7 cut(s)	141, 159, 245, 519, 559, 584, 687
TasI	AATT	4 cut(s)	106, 375, 466, 796
TauI	GCSGC	6 cut(s)	312, 413, 434, 536, 539, 579
TfiI	GAWTC	2 cut(s)	143, 476
TscAI	CASTG	1 cut(s)	732
TseFI	GTSAC	1 cut(s)	593
TseI	GCWGC	2 cut(s)	545, 588
Tsp45I	GTSAC	1 cut(s)	593
TspDTI	ATGAA	4 cut(s)	26, 110, 687, 776
TspGWI	ACGGA	2 cut(s)	240, 469
TspRI	CASTG	1 cut(s)	732
Van91I	CCANNNNNTGG	1 cut(s)	378
VpaK11BI	GGWCC	1 cut(s)	722
XapI	RAATTY	2 cut(s)	375, 796
XceI	RCATGY	2 cut(s)	462, 694
XhoI	CTCGAG	1 cut(s)	583
XmiI	GTMKAC	1 cut(s)	303
XspI	CTAG	4 cut(s)	71, 204, 239, 708

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.