Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8280319.1

Orthogroup ID

OG0000958

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 218

Gene Structure 217 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8280319.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 217 bp

atgaactccaacaaccagctctcagactccaaccaccaaagcctcgagtcagtctcctccatcgacaagcccgagacgtccgccttatctgacacctgcagcggcacgactagccgttcaactcattccgacggagaggtgatactagcttccagcaggccgaagaagcgagccgggaggcgtgtgttcaaggagactcgccacccggtctaccgcg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0001558 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009889 GO:0009987 GO:0010035 GO:0010371 GO:0010468 GO:0010556 GO:0010565 GO:0010817 GO:0016143 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0019748 GO:0019757 GO:0019760 GO:0022603 GO:0022604 GO:0031323 GO:0031326 GO:0032350 GO:0040008 GO:0040034 GO:0042221 GO:0043436 GO:0043455 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0046885 GO:0046890 GO:0048506 GO:0048509 GO:0048510 GO:0048638 GO:0050789 GO:0050793 GO:0050794 GO:0050826 GO:0050896 GO:0051128 GO:0051171 GO:0051252 GO:0051510 GO:0060255 GO:0062012 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

72

Amino Acids

7.93

Weight (kDa)

9.51

Isoelectric Point (pI)

50.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000958)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12610 AT1G63030 AT1G63030
fragaria_vesca	FvH4_5g01440
malus_domestica	MD04G1067800.v1.1 MD04G1067900.v1.1 MD06G1072300.v1.1
prunus_persica	Prupe.5G089900_v2.0.a1 Prupe.5G090000_v2.0.a1 Prupe.5G090100_v2.0.a1 Prupe.5G090200_v2.0.a1 Prupe.5G090500_v2.0.a1
pyrus_communis	pycom04g06140 pycom06g07110 pycom06g07120
rosa_chinensis	RchiOBHm_Chr7g0199251 RchiOBHm_Chr7g0199301 RchiOBHm_Chr7g0199331 RchiOBHm_Chr7g0199351 RchiOBHm_Chr7g0199381
rosa_laevigata	RLG00000002739 RLG00000002740 RLG00000003796 RLG00000003799 RLG00000003801
rosa_multiflora	Rmu_co8046292.1_g000001 Rmu_co8280319.1_g000001 Rmu_sc0000855.1_g000009 Rmu_sc0000950.1_g000001 Rmu_sc0000950.1_g000005 Rmu_sc0007820.1_g000002 Rmu_sc0010720.1_g000001 Rmu_sc0039534.1_g000001
rosa_roxburghii	Rroxscaffold_3G00256750 Rroxscaffold_3G00256770 Rroxscaffold_3G00256870 Rroxscaffold_5G00359530
rosa_rugosa	Rorug07G0053500 Rorug07G0053500 Rorug07G0053500 Rorug07G0053800
rosa_samantha	Rh4BG264100 Rh7AG177700 Rh7AG177900 Rh7AG178000 Rh7AG178100 Rh7AG178600 Rh7BG181300 Rh7BG181400 Rh7BG181600 Rh7BG181900 Rh7BG182100 Rh7CG186800 Rh7CG187000 Rh7CG187200 Rh7CG187400 Rh7DG180800 Rh7DG181700
rosa_wichuraiana	Rw7G015620 Rw7G015630 Rw7G015650 Rw7G015670 Rw7G015680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	104
AatII	GACGTC	1 cut(s)	80
Acc36I	ACCTGC	1 cut(s)	104
AccI	GTMKAC	1 cut(s)	210
AccII	CGCG	1 cut(s)	216
AciI	CCGC	3 cut(s)	81, 102, 214
AcyI	GRCGYC	1 cut(s)	77
AgsI	TTSAA	2 cut(s)	120, 190
AluBI	AGCT	2 cut(s)	19, 149
AluI	AGCT	2 cut(s)	19, 149
Alw26I	GTCTC	3 cut(s)	58, 68, 188
Ama87I	CYCGRG	2 cut(s)	44, 71
AoxI	GGCC	1 cut(s)	158
ApeKI	GCWGC	1 cut(s)	99
AsuC2I	CCSGG	2 cut(s)	175, 206
AsuHPI	GGTGA	1 cut(s)	151
AvaI	CYCGRG	2 cut(s)	44, 71
BbvI	GCAGC	1 cut(s)	111
BccI	CCATC	1 cut(s)	68
BceAI	ACGGC	1 cut(s)	99
BcnI	CCSGG	2 cut(s)	175, 206
BcoDI	GTCTC	3 cut(s)	58, 68, 188
BfaI	CTAG	2 cut(s)	111, 146
BfmI	CTRYAG	1 cut(s)	97
BfuAI	ACCTGC	1 cut(s)	104
BisI	GCNGC	2 cut(s)	100, 103
BlsI	GCNGC	2 cut(s)	101, 104
Bme1390I	CCNGG	2 cut(s)	175, 206
BmeT110I	CYCGRG	2 cut(s)	44, 71
BmrFI	CCNGG	2 cut(s)	175, 206
BplI	GAGNNNNNCTC	2 cut(s)	38, 70
BpuMI	CCSGG	2 cut(s)	175, 206
BsaHI	GRCGYC	1 cut(s)	77
BseMII	CTCAG	1 cut(s)	36
BseRI	GAGGAG	1 cut(s)	46
BseXI	GCAGC	1 cut(s)	111
Bsh1236I	CGCG	1 cut(s)	216
BshFI	GGCC	1 cut(s)	160
BsiHKCI	CYCGRG	2 cut(s)	44, 71
BsiSI	CCGG	2 cut(s)	174, 206
BsmAI	GTCTC	3 cut(s)	58, 68, 188
BsmBI	CGTCTC	1 cut(s)	68
BsnI	GGCC	1 cut(s)	160
BsoBI	CYCGRG	2 cut(s)	44, 71
BspACI	CCGC	3 cut(s)	81, 102, 214
BspANI	GGCC	1 cut(s)	160
BspCNI	CTCAG	1 cut(s)	35
BspFNI	CGCG	1 cut(s)	216
BspMAI	CTGCAG	1 cut(s)	101
BspMI	ACCTGC	1 cut(s)	104
BssNI	GRCGYC	1 cut(s)	77
BstACI	GRCGYC	1 cut(s)	77
BstC8I	GCNNGC	2 cut(s)	158, 171
BstDEI	CTNAG	1 cut(s)	22
BstFNI	CGCG	1 cut(s)	216
BstMAI	GTCTC	3 cut(s)	58, 68, 188
BstMWI	GCNNNNNNNGC	2 cut(s)	111, 166
BstSCI	CCNGG	2 cut(s)	173, 204
BstSFI	CTRYAG	1 cut(s)	97
BstUI	CGCG	1 cut(s)	216
BstV1I	GCAGC	1 cut(s)	111
BsuRI	GGCC	1 cut(s)	160
BveI	ACCTGC	1 cut(s)	104
Cac8I	GCNNGC	2 cut(s)	158, 171
CviJI	RGCY	7 cut(s)	19, 42, 70, 114, 149, 160, 173
CviKI_1	RGCY	7 cut(s)	19, 42, 70, 114, 149, 160, 173
DdeI	CTNAG	1 cut(s)	22
EciI	GGCGGA	1 cut(s)	70
Eco88I	CYCGRG	2 cut(s)	44, 71
Esp3I	CGTCTC	1 cut(s)	68
FblI	GTMKAC	1 cut(s)	210
Fnu4HI	GCNGC	2 cut(s)	100, 103
Fsp4HI	GCNGC	2 cut(s)	100, 103
FspBI	CTAG	2 cut(s)	111, 146
GluI	GCNGC	2 cut(s)	100, 103
HaeIII	GGCC	1 cut(s)	160
HapII	CCGG	2 cut(s)	174, 206
Hin1I	GRCGYC	1 cut(s)	77
HinfI	GANTC	3 cut(s)	26, 47, 196
HpaII	CCGG	2 cut(s)	174, 206
HphI	GGTGA	1 cut(s)	151
Hpy166II	GTNNAC	1 cut(s)	211
Hpy188I	TCNGA	3 cut(s)	25, 91, 130
Hpy8I	GTNNAC	1 cut(s)	211
Hpy99I	CGWCG	1 cut(s)	134
HpyCH4IV	ACGT	1 cut(s)	77
HpyCH4V	TGCA	1 cut(s)	99
HpyF10VI	GCNNNNNNNGC	2 cut(s)	111, 166
HpyF3I	CTNAG	1 cut(s)	22
HpySE526I	ACGT	1 cut(s)	77
Hsp92I	GRCGYC	1 cut(s)	77
LpnPI	CCDG	5 cut(s)	29, 109, 142, 166, 187
Lsp1109I	GCAGC	1 cut(s)	111
MaeI	CTAG	2 cut(s)	111, 146
MaeII	ACGT	1 cut(s)	77
MboII	GAAGA	1 cut(s)	175
MlyI	GAGTC	3 cut(s)	20, 56, 190
MmeI	TCCRAC	3 cut(s)	33, 54, 153
MnlI	CCTC	4 cut(s)	53, 67, 130, 171
MspA1I	CMGCKG	1 cut(s)	102
MspI	CCGG	2 cut(s)	174, 206
MspR9I	CCNGG	2 cut(s)	175, 206
MvnI	CGCG	1 cut(s)	216
MwoI	GCNNNNNNNGC	2 cut(s)	111, 166
NciI	CCSGG	2 cut(s)	175, 206
PaeR7I	CTCGAG	1 cut(s)	44
PaqCI	CACCTGC	1 cut(s)	104
PcsI	WCGNNNNNNNCGW	1 cut(s)	69
PkrI	GCNGC	2 cut(s)	101, 104
PleI	GAGTC	3 cut(s)	20, 55, 190
PpsI	GAGTC	3 cut(s)	20, 55, 190
PspXI	VCTCGAGB	1 cut(s)	44
PstI	CTGCAG	1 cut(s)	101
SatI	GCNGC	2 cut(s)	100, 103
SchI	GAGTC	3 cut(s)	20, 56, 190
ScrFI	CCNGG	2 cut(s)	175, 206
SetI	ASST	5 cut(s)	21, 80, 98, 141, 151
SfcI	CTRYAG	1 cut(s)	97
Sfr274I	CTCGAG	1 cut(s)	44
SlaI	CTCGAG	1 cut(s)	44
SmlI	CTYRAG	1 cut(s)	44
SmoI	CTYRAG	1 cut(s)	44
SsiI	CCGC	3 cut(s)	81, 102, 214
SspMI	CTAG	2 cut(s)	111, 146
StyD4I	CCNGG	2 cut(s)	173, 204
TaiI	ACGT	1 cut(s)	80
TaqI	TCGA	2 cut(s)	45, 63
TauI	GCSGC	1 cut(s)	105
TseI	GCWGC	1 cut(s)	99
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	147
XhoI	CTCGAG	1 cut(s)	44
XmiI	GTMKAC	1 cut(s)	210
XspI	CTAG	2 cut(s)	111, 146
ZraI	GACGTC	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.