Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000958

Physical Location & Seq

Genomic Coordinates Reverse (-)

51318493 .. 51319215

Gene Structure 723 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00256870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGAACTCCAATTACCAGCTCTCAGACTCCAACCAGCAAAGCCTTGAATCACTCTCCTCCATCAACAAGCCCGAGTCTTCTTCCTTATCTGACACGAGCTTCACGACTCGCCGTTCACCTCATTCCGACGAAGCGGTGATATTAGCTTCGAGCAGGCCGAAGAAGCGAGCCGGTAGGCGAGTGTTCAAGGAGACTCGCCACCCCGTCTACCGGGGAGTGAGGCGCAGGAACAATAACAAGTGGGTGTGCGAGCTCAGGGAGCCGAACAAAAAGAACAGAATTTGGCTCGGGACGTACCCAACTCTTGAGATGGCCGCTCGGGCACACGATGTGGCGGCTTTGGCCCTTAGGGGGAAGCAGGCATGCCTCAATTTTGCTGATTCCGTGTGGCGGTTGCCCATTCCGGCTTCTAAAGACCAGCTCGACATTCGCAGGGCCGCCGCCGAGGCTGCTGAGACATTTCGACCTGAGGAGTTCGGCGGCGTCTCGAGCAGCTGTGACGACAACGAGAGGGAATATGAGGATGAGAATGTTGAGATGGACAACGACAAGAAGAATGATGGCTTCTACGAGGATGAAGAGGCGCTCTTCGACATGCCCAGATTGCTGACTAGCATGGCGGAGGGTCCACTGCTCTCTCCACCTCGTCATTACTTGGACAGTATGAGCTGGGTAGACTATCAGGTGGAAAGCGAGTCAGACTTCAGCTTATGGAGCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0001558 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009889 GO:0009987 GO:0010035 GO:0010371 GO:0010468 GO:0010556 GO:0010565 GO:0010817 GO:0016143 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0019748 GO:0019757 GO:0019760 GO:0022603 GO:0022604 GO:0031323 GO:0031326 GO:0032350 GO:0040008 GO:0040034 GO:0042221 GO:0043436 GO:0043455 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0046885 GO:0046890 GO:0048506 GO:0048509 GO:0048510 GO:0048638 GO:0050789 GO:0050793 GO:0050794 GO:0050826 GO:0050896 GO:0051128 GO:0051171 GO:0051252 GO:0051510 GO:0060255 GO:0062012 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

240

Amino Acids

27.51

Weight (kDa)

5.3

Isoelectric Point (pI)

70.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	68 - 118	1.8e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000958)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12610 AT1G63030 AT1G63030
fragaria_vesca	FvH4_5g01440
malus_domestica	MD04G1067800.v1.1 MD04G1067900.v1.1 MD06G1072300.v1.1
prunus_persica	Prupe.5G089900_v2.0.a1 Prupe.5G090000_v2.0.a1 Prupe.5G090100_v2.0.a1 Prupe.5G090200_v2.0.a1 Prupe.5G090500_v2.0.a1
pyrus_communis	pycom04g06140 pycom06g07110 pycom06g07120
rosa_chinensis	RchiOBHm_Chr7g0199251 RchiOBHm_Chr7g0199301 RchiOBHm_Chr7g0199331 RchiOBHm_Chr7g0199351 RchiOBHm_Chr7g0199381
rosa_laevigata	RLG00000002739 RLG00000002740 RLG00000003796 RLG00000003799 RLG00000003801
rosa_multiflora	Rmu_co8046292.1_g000001 Rmu_co8280319.1_g000001 Rmu_sc0000855.1_g000009 Rmu_sc0000950.1_g000001 Rmu_sc0000950.1_g000005 Rmu_sc0007820.1_g000002 Rmu_sc0010720.1_g000001 Rmu_sc0039534.1_g000001
rosa_roxburghii	Rroxscaffold_3G00256750 Rroxscaffold_3G00256770 Rroxscaffold_3G00256870 Rroxscaffold_5G00359530
rosa_rugosa	Rorug07G0053500 Rorug07G0053500 Rorug07G0053500 Rorug07G0053800
rosa_samantha	Rh4BG264100 Rh7AG177700 Rh7AG177900 Rh7AG178000 Rh7AG178100 Rh7AG178600 Rh7BG181300 Rh7BG181400 Rh7BG181600 Rh7BG181900 Rh7BG182100 Rh7CG186800 Rh7CG187000 Rh7CG187200 Rh7CG187400 Rh7DG180800 Rh7DG181700
rosa_wichuraiana	Rw7G015620 Rw7G015630 Rw7G015650 Rw7G015670 Rw7G015680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	317
AccI	GTMKAC	2 cut(s)	207, 675
AciI	CCGC	8 cut(s)	134, 315, 335, 391, 438, 441, 480, 620
AcoI	YGGCCR	1 cut(s)	312
AcsI	RAATTY	1 cut(s)	279
AcuI	CTGAAG	1 cut(s)	688
AcyI	GRCGYC	1 cut(s)	483
AdeI	CACNNNGTG	1 cut(s)	331
AfaI	GTAC	1 cut(s)	296
AfiI	CCNNNNNNNGG	3 cut(s)	210, 351, 390
AgsI	TTSAA	2 cut(s)	47, 187
AluBI	AGCT	9 cut(s)	19, 99, 146, 253, 421, 495, 669, 708, 717
AluI	AGCT	9 cut(s)	19, 99, 146, 253, 421, 495, 669, 708, 717
Alw21I	GWGCWC	1 cut(s)	255
Alw26I	GTCTC	3 cut(s)	185, 449, 490
Ama87I	CYCGRG	4 cut(s)	71, 287, 318, 487
AoxI	GGCC	4 cut(s)	155, 312, 342, 435
ApeKI	GCWGC	2 cut(s)	449, 492
ApoI	RAATTY	1 cut(s)	279
AspLEI	GCGC	2 cut(s)	225, 586
AspS9I	GGNCC	3 cut(s)	343, 435, 626
AsuC2I	CCSGG	1 cut(s)	212
AsuHPI	GGTGA	2 cut(s)	108, 148
AvaI	CYCGRG	4 cut(s)	71, 287, 318, 487
AvaII	GGWCC	1 cut(s)	626
AxyI	CCTNAGG	2 cut(s)	347, 468
BaeGI	GKGCMC	1 cut(s)	325
BanII	GRGCYC	1 cut(s)	255
BauI	CACGAG	1 cut(s)	94
BbsI	GAAGAC	1 cut(s)	69
Bbv12I	GWGCWC	1 cut(s)	255
BbvI	GCAGC	2 cut(s)	436, 504
BccI	CCATC	4 cut(s)	68, 304, 532, 554
BceAI	ACGGC	1 cut(s)	96
BcnI	CCSGG	1 cut(s)	212
BcoDI	GTCTC	3 cut(s)	185, 449, 490
BfaI	CTAG	1 cut(s)	612
BfoI	RGCGCY	1 cut(s)	587
BglI	GCCNNNNNGGC	2 cut(s)	320, 446
BisI	GCNGC	7 cut(s)	315, 336, 438, 441, 450, 481, 493
BlsI	GCNGC	7 cut(s)	316, 337, 439, 442, 451, 482, 494
Bme1390I	CCNGG	1 cut(s)	212
Bme18I	GGWCC	1 cut(s)	626
BmeT110I	CYCGRG	4 cut(s)	71, 287, 318, 487
BmgT120I	GGNCC	3 cut(s)	343, 435, 626
BmiI	GGNNCC	2 cut(s)	261, 627
BmrFI	CCNGG	1 cut(s)	212
BpiI	GAAGAC	1 cut(s)	69
Bpu10I	CCTNAGC	1 cut(s)	254
BpuEI	CTTGAG	1 cut(s)	326
BpuMI	CCSGG	1 cut(s)	212
BsaHI	GRCGYC	1 cut(s)	483
BsaJI	CCNNGG	2 cut(s)	211, 444
Bsc4I	CCNNNNNNNGG	3 cut(s)	210, 351, 390
Bse118I	RCCGGY	1 cut(s)	170
Bse21I	CCTNAGG	2 cut(s)	347, 468
BseDI	CCNNGG	2 cut(s)	211, 444
BseGI	GGATG	2 cut(s)	529, 580
BseLI	CCNNNNNNNGG	3 cut(s)	210, 351, 390
BseMII	CTCAG	4 cut(s)	36, 268, 444, 459
BseRI	GAGGAG	2 cut(s)	46, 485
BseSI	GKGCMC	1 cut(s)	325
BseXI	GCAGC	2 cut(s)	436, 504
BseYI	CCCAGC	1 cut(s)	669
BshFI	GGCC	4 cut(s)	157, 314, 344, 437
BsiHKAI	GWGCWC	1 cut(s)	255
BsiHKCI	CYCGRG	4 cut(s)	71, 287, 318, 487
BsiSI	CCGG	3 cut(s)	171, 211, 404
BslFI	GGGAC	1 cut(s)	304
BslI	CCNNNNNNNGG	3 cut(s)	210, 351, 390
BsmAI	GTCTC	3 cut(s)	185, 449, 490
BsmBI	CGTCTC	1 cut(s)	490
BsmFI	GGGAC	1 cut(s)	304
BsnI	GGCC	4 cut(s)	157, 314, 344, 437
BsoBI	CYCGRG	4 cut(s)	71, 287, 318, 487
Bsp1286I	GDGCHC	2 cut(s)	255, 325
BspACI	CCGC	8 cut(s)	134, 315, 335, 391, 438, 441, 480, 620
BspANI	GGCC	4 cut(s)	157, 314, 344, 437
BspCNI	CTCAG	4 cut(s)	35, 267, 445, 460
BspLI	GGNNCC	2 cut(s)	261, 627
BspQI	GCTCTTC	1 cut(s)	593
BsrBI	CCGCTC	1 cut(s)	317
BsrFI	RCCGGY	1 cut(s)	170
BssAI	RCCGGY	1 cut(s)	170
BssECI	CCNNGG	2 cut(s)	211, 444
BssNI	GRCGYC	1 cut(s)	483
BssSI	CACGAG	1 cut(s)	94
Bst2BI	CACGAG	1 cut(s)	94
Bst4CI	ACNGT	1 cut(s)	662
Bst6I	CTCTTC	2 cut(s)	573, 593
BstACI	GRCGYC	1 cut(s)	483
BstC8I	GCNNGC	5 cut(s)	155, 168, 251, 360, 364
BstDEI	CTNAG	5 cut(s)	22, 254, 347, 453, 468
BstF5I	GGATG	2 cut(s)	529, 580
BstH2I	RGCGCY	1 cut(s)	587
BstHHI	GCGC	2 cut(s)	225, 586
BstMAI	GTCTC	3 cut(s)	185, 449, 490
BstMWI	GCNNNNNNNGC	9 cut(s)	163, 259, 320, 341, 446, 449, 489, 604, 714
BstNSI	RCATGY	2 cut(s)	366, 598
BstSCI	CCNGG	1 cut(s)	210
BstSLI	GKGCMC	1 cut(s)	325
BstV1I	GCAGC	2 cut(s)	436, 504
BstV2I	GAAGAC	1 cut(s)	69
Bsu36I	CCTNAGG	2 cut(s)	347, 468
BsuRI	GGCC	4 cut(s)	157, 314, 344, 437
BtsCI	GGATG	2 cut(s)	529, 580
BtsI	GCAGTG	1 cut(s)	629
BtsIMutI	CAGTG	1 cut(s)	629
Cac8I	GCNNGC	5 cut(s)	155, 168, 251, 360, 364
CfoI	GCGC	2 cut(s)	225, 586
Cfr10I	RCCGGY	1 cut(s)	170
Cfr13I	GGNCC	3 cut(s)	343, 435, 626
CseI	GACGC	1 cut(s)	472
Csp6I	GTAC	1 cut(s)	295
CviAII	CATG	3 cut(s)	363, 595, 616
CviQI	GTAC	1 cut(s)	295
DdeI	CTNAG	5 cut(s)	22, 254, 347, 453, 468
DraIII	CACNNNGTG	1 cut(s)	331
EaeI	YGGCCR	1 cut(s)	312
Eam1104I	CTCTTC	2 cut(s)	573, 593
EarI	CTCTTC	2 cut(s)	573, 593
EciI	GGCGGA	1 cut(s)	635
Ecl136II	GAGCTC	1 cut(s)	253
Eco24I	GRGCYC	1 cut(s)	255
Eco47I	GGWCC	1 cut(s)	626
Eco53kI	GAGCTC	1 cut(s)	253
Eco57I	CTGAAG	1 cut(s)	688
Eco81I	CCTNAGG	2 cut(s)	347, 468
Eco88I	CYCGRG	4 cut(s)	71, 287, 318, 487
EcoICRI	GAGCTC	1 cut(s)	253
EcoT38I	GRGCYC	1 cut(s)	255
Esp3I	CGTCTC	1 cut(s)	490
FaeI	CATG	3 cut(s)	366, 598, 619
FaiI	YATR	6 cut(s)	364, 519, 596, 617, 665, 712
FaqI	GGGAC	1 cut(s)	304
FatI	CATG	3 cut(s)	362, 594, 615
FblI	GTMKAC	2 cut(s)	207, 675
Fnu4HI	GCNGC	7 cut(s)	315, 336, 438, 441, 450, 481, 493
FokI	GGATG	2 cut(s)	536, 587
FriOI	GRGCYC	1 cut(s)	255
Fsp4HI	GCNGC	7 cut(s)	315, 336, 438, 441, 450, 481, 493
FspBI	CTAG	1 cut(s)	612
GlaI	GCGC	2 cut(s)	224, 585
GluI	GCNGC	7 cut(s)	315, 336, 438, 441, 450, 481, 493
GsaI	CCCAGC	1 cut(s)	673
HaeII	RGCGCY	1 cut(s)	587
HaeIII	GGCC	4 cut(s)	157, 314, 344, 437
HapII	CCGG	3 cut(s)	171, 211, 404
HgaI	GACGC	1 cut(s)	472
HhaI	GCGC	2 cut(s)	225, 586
Hin1I	GRCGYC	1 cut(s)	483
Hin1II	CATG	3 cut(s)	366, 598, 619
Hin6I	GCGC	2 cut(s)	223, 584
HinP1I	GCGC	2 cut(s)	223, 584
HinfI	GANTC	7 cut(s)	26, 47, 74, 106, 193, 380, 695
HpaII	CCGG	3 cut(s)	171, 211, 404
HphI	GGTGA	2 cut(s)	108, 148
Hpy166II	GTNNAC	4 cut(s)	116, 208, 629, 676
Hpy188I	TCNGA	4 cut(s)	25, 91, 127, 700
Hpy188III	TCNNGA	4 cut(s)	103, 289, 305, 487
Hpy8I	GTNNAC	4 cut(s)	116, 208, 629, 676
Hpy99I	CGWCG	1 cut(s)	131
HpyCH4III	ACNGT	1 cut(s)	662
HpyCH4IV	ACGT	1 cut(s)	293
HpyF10VI	GCNNNNNNNGC	9 cut(s)	163, 259, 320, 341, 446, 449, 489, 604, 714
HpyF3I	CTNAG	5 cut(s)	22, 254, 347, 453, 468
HpySE526I	ACGT	1 cut(s)	293
Hsp92I	GRCGYC	1 cut(s)	483
Hsp92II	CATG	3 cut(s)	366, 598, 619
HspAI	GCGC	2 cut(s)	223, 584
LguI	GCTCTTC	1 cut(s)	593
LmnI	GCTCC	2 cut(s)	259, 714
Lsp1109I	GCAGC	2 cut(s)	436, 504
MaeI	CTAG	1 cut(s)	612
MaeII	ACGT	1 cut(s)	293
MaeIII	GTNAC	1 cut(s)	497
MbiI	CCGCTC	1 cut(s)	317
MboII	GAAGA	6 cut(s)	69, 72, 172, 565, 580, 590
MhlI	GDGCHC	2 cut(s)	255, 325
MluCI	AATT	3 cut(s)	10, 279, 370
MlyI	GAGTC	5 cut(s)	20, 83, 100, 187, 704
MmeI	TCCRAC	2 cut(s)	54, 150
MspA1I	CMGCKG	1 cut(s)	495
MspI	CCGG	3 cut(s)	171, 211, 404
MspR9I	CCNGG	1 cut(s)	212
MwoI	GCNNNNNNNGC	9 cut(s)	163, 259, 320, 341, 446, 449, 489, 604, 714
NciI	CCSGG	1 cut(s)	212
NlaIII	CATG	3 cut(s)	366, 598, 619
NlaIV	GGNNCC	2 cut(s)	261, 627
NmeAIII	GCCGAG	1 cut(s)	469
NmuCI	GTSAC	1 cut(s)	497
NspI	RCATGY	2 cut(s)	366, 598
PaeI	GCATGC	1 cut(s)	366
PaeR7I	CTCGAG	1 cut(s)	487
PciSI	GCTCTTC	1 cut(s)	593
PcsI	WCGNNNNNNNCGW	2 cut(s)	101, 155
PfeI	GAWTC	2 cut(s)	47, 380
PkrI	GCNGC	7 cut(s)	316, 337, 439, 442, 451, 482, 494
PleI	GAGTC	5 cut(s)	20, 82, 100, 187, 703
PpsI	GAGTC	5 cut(s)	20, 82, 100, 187, 703
Psp124BI	GAGCTC	1 cut(s)	255
PspFI	CCCAGC	1 cut(s)	669
PspN4I	GGNNCC	2 cut(s)	261, 627
PspPI	GGNCC	3 cut(s)	343, 435, 626
PsrI	GAACNNNNNNTAC	1 cut(s)	28
PvuII	CAGCTG	1 cut(s)	495
RsaI	GTAC	1 cut(s)	296
RsaNI	GTAC	1 cut(s)	295
SacI	GAGCTC	1 cut(s)	255
SapI	GCTCTTC	1 cut(s)	593
SatI	GCNGC	7 cut(s)	315, 336, 438, 441, 450, 481, 493
Sau96I	GGNCC	3 cut(s)	343, 435, 626
SchI	GAGTC	5 cut(s)	20, 83, 100, 187, 704
ScrFI	CCNGG	1 cut(s)	212
SduI	GDGCHC	2 cut(s)	255, 325
Sfr274I	CTCGAG	1 cut(s)	487
SinI	GGWCC	1 cut(s)	626
SlaI	CTCGAG	1 cut(s)	487
SmlI	CTYRAG	2 cut(s)	305, 487
SmoI	CTYRAG	2 cut(s)	305, 487
SphI	GCATGC	1 cut(s)	366
Sse9I	AATT	3 cut(s)	10, 279, 370
SsiI	CCGC	8 cut(s)	134, 315, 335, 391, 438, 441, 480, 620
SspMI	CTAG	1 cut(s)	612
SstI	GAGCTC	1 cut(s)	255
StyD4I	CCNGG	1 cut(s)	210
TaaI	ACNGT	1 cut(s)	662
TaiI	ACGT	1 cut(s)	296
TaqI	TCGA	5 cut(s)	149, 423, 463, 488, 591
TasI	AATT	3 cut(s)	10, 279, 370
TauI	GCSGC	5 cut(s)	317, 338, 440, 443, 483
TfiI	GAWTC	2 cut(s)	47, 380
TscAI	CASTG	1 cut(s)	636
TseFI	GTSAC	1 cut(s)	497
TseI	GCWGC	2 cut(s)	449, 492
Tsp45I	GTSAC	1 cut(s)	497
TspDTI	ATGAA	2 cut(s)	17, 591
TspGWI	ACGGA	1 cut(s)	373
TspRI	CASTG	1 cut(s)	636
VpaK11BI	GGWCC	1 cut(s)	626
XapI	RAATTY	1 cut(s)	279
XceI	RCATGY	2 cut(s)	366, 598
XhoI	CTCGAG	1 cut(s)	487
XmiI	GTMKAC	2 cut(s)	207, 675
XspI	CTAG	1 cut(s)	612

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.