Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0000958

Physical Location & Seq

Genomic Coordinates Reverse (-)

11589726 .. 11590436

Gene Structure 711 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g07110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGAATACGATCTTCAGTACTCAACTCTCCGATTCCTCCGAAAAGCCTGAATCGAGTTCCGACGACACAAGCATCACGGCTCAAAGCCAGCTGGCTTCCTTCTCCGACGAGGAGGTCATTTTGGCGTCCAGCCGGCCAAAGAAGCGAGCGGGGAGGAGAGTTTTCAAGGAGACGAGGCACCCGGTTTACAGAGGAGTGAGGAGGAGGAACAACAACAAGTGGGTGTGCGAAATGAGAGAACCAAACAAGAAGAAGTCGAGGATATGGCTCGGAACTTATCCGACGGCCGAGATGGCAGCTCGGGCGCATGACGTGGCGGCATTGGCCTTTAGAGGGAAGCTTGCCTGCCTCAATTTTGCAGACTCCGCATGGCGCCTGCCTGTTCCGGCATCCATTGATTCAGTGGATATCAGACGGGCGGCTGCGGAGGCTGCGGAGACGTTCCGGCCAGCGGAGTTTGGCGGAGTGTTGGAAAGCGGCGATGATGAGAAGGAGAGCAAGAAAATGGAGGAGGAGAAGGGTTGTGGAGGCGTGGAGGAAAGTGGAATCTTGTTTTACTTGGATGAGGAGGAAATGTTCGACATGCCAAGGTTGCTGGATAGTATGGCGGAAGGGCTTCTGCTCTCTCCACCTCACTCTTCAGGGGGCTACATGAACTGGGATGACGTGGCAAGCAATGATGACGTCAGTCTGTGGAGCTTCTCAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0001558 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009889 GO:0009987 GO:0010035 GO:0010371 GO:0010468 GO:0010556 GO:0010565 GO:0010817 GO:0016143 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0019748 GO:0019757 GO:0019760 GO:0022603 GO:0022604 GO:0031323 GO:0031326 GO:0032350 GO:0040008 GO:0040034 GO:0042221 GO:0043436 GO:0043455 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0046885 GO:0046890 GO:0048506 GO:0048509 GO:0048510 GO:0048638 GO:0050789 GO:0050793 GO:0050794 GO:0050826 GO:0050896 GO:0051128 GO:0051171 GO:0051252 GO:0051510 GO:0060255 GO:0062012 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

237

Amino Acids

26.31

Weight (kDa)

5.04

Isoelectric Point (pI)

65.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	61 - 112	1.1e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000958)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12610 AT1G63030 AT1G63030
fragaria_vesca	FvH4_5g01440
malus_domestica	MD04G1067800.v1.1 MD04G1067900.v1.1 MD06G1072300.v1.1
prunus_persica	Prupe.5G089900_v2.0.a1 Prupe.5G090000_v2.0.a1 Prupe.5G090100_v2.0.a1 Prupe.5G090200_v2.0.a1 Prupe.5G090500_v2.0.a1
pyrus_communis	pycom04g06140 pycom06g07110 pycom06g07120
rosa_chinensis	RchiOBHm_Chr7g0199251 RchiOBHm_Chr7g0199301 RchiOBHm_Chr7g0199331 RchiOBHm_Chr7g0199351 RchiOBHm_Chr7g0199381
rosa_laevigata	RLG00000002739 RLG00000002740 RLG00000003796 RLG00000003799 RLG00000003801
rosa_multiflora	Rmu_co8046292.1_g000001 Rmu_co8280319.1_g000001 Rmu_sc0000855.1_g000009 Rmu_sc0000950.1_g000001 Rmu_sc0000950.1_g000005 Rmu_sc0007820.1_g000002 Rmu_sc0010720.1_g000001 Rmu_sc0039534.1_g000001
rosa_roxburghii	Rroxscaffold_3G00256750 Rroxscaffold_3G00256770 Rroxscaffold_3G00256870 Rroxscaffold_5G00359530
rosa_rugosa	Rorug07G0053500 Rorug07G0053500 Rorug07G0053500 Rorug07G0053800
rosa_samantha	Rh4BG264100 Rh7AG177700 Rh7AG177900 Rh7AG178000 Rh7AG178100 Rh7AG178600 Rh7BG181300 Rh7BG181400 Rh7BG181600 Rh7BG181900 Rh7BG182100 Rh7CG186800 Rh7CG187000 Rh7CG187200 Rh7CG187400 Rh7DG180800 Rh7DG181700
rosa_wichuraiana	Rw7G015620 Rw7G015630 Rw7G015650 Rw7G015670 Rw7G015680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	113
AatII	GACGTC	1 cut(s)	687
AccB1I	GGYRCC	2 cut(s)	177, 372
AccBSI	CCGCTC	1 cut(s)	149
AcoI	YGGCCR	3 cut(s)	134, 285, 446
AcuI	CTGAAG	1 cut(s)	624
AcyI	GRCGYC	3 cut(s)	125, 373, 684
AfaI	GTAC	1 cut(s)	19
AfiI	CCNNNNNNNGG	2 cut(s)	333, 451
AgsI	TTSAA	1 cut(s)	166
AjiI	CACGTC	2 cut(s)	313, 667
AloI	GAACNNNNNNTCC	2 cut(s)	560, 592
AluBI	AGCT	4 cut(s)	91, 299, 340, 699
AluI	AGCT	4 cut(s)	91, 299, 340, 699
Alw26I	GTCTC	2 cut(s)	164, 431
Ama87I	CYCGRG	1 cut(s)	300
AoxI	GGCC	4 cut(s)	134, 285, 324, 446
ApeKI	GCWGC	3 cut(s)	296, 422, 431
Asp700I	GAANNNNTTC	1 cut(s)	615
AspLEI	GCGC	2 cut(s)	307, 375
AsuC2I	CCSGG	1 cut(s)	182
AvaI	CYCGRG	1 cut(s)	300
BanI	GGYRCC	2 cut(s)	177, 372
BbvI	GCAGC	3 cut(s)	308, 409, 418
BccI	CCATC	1 cut(s)	286
BceAI	ACGGC	2 cut(s)	93, 300
BcnI	CCSGG	1 cut(s)	182
BcoDI	GTCTC	2 cut(s)	164, 431
BfoI	RGCGCY	1 cut(s)	376
BglI	GCCNNNNNGGC	1 cut(s)	293
BisI	GCNGC	6 cut(s)	297, 318, 420, 423, 432, 478
BlsI	GCNGC	6 cut(s)	298, 319, 421, 424, 433, 479
BmcAI	AGTACT	1 cut(s)	19
Bme1390I	CCNGG	1 cut(s)	182
BmeT110I	CYCGRG	1 cut(s)	300
BmgBI	CACGTC	2 cut(s)	313, 667
BmiI	GGNNCC	2 cut(s)	179, 374
BmrFI	CCNGG	1 cut(s)	182
BmrI	ACTGGG	1 cut(s)	667
BmsI	GCATC	2 cut(s)	81, 398
BmuI	ACTGGG	1 cut(s)	667
BoxI	GACNNNNGTC	1 cut(s)	687
BpuMI	CCSGG	1 cut(s)	182
BsaHI	GRCGYC	3 cut(s)	125, 373, 684
BsaJI	CCNNGG	1 cut(s)	587
BsaXI	ACNNNNNCTCC	2 cut(s)	560, 590
Bsc4I	CCNNNNNNNGG	2 cut(s)	333, 451
Bse118I	RCCGGY	1 cut(s)	132
Bse1I	ACTGG	1 cut(s)	662
Bse3DI	GCAATG	1 cut(s)	682
BseDI	CCNNGG	1 cut(s)	587
BseGI	GGATG	3 cut(s)	389, 568, 667
BseLI	CCNNNNNNNGG	2 cut(s)	333, 451
BseMI	GCAATG	1 cut(s)	682
BseNI	ACTGG	1 cut(s)	662
BseRI	GAGGAG	8 cut(s)	125, 169, 207, 214, 217, 524, 527, 581
BseX3I	CGGCCG	1 cut(s)	285
BseXI	GCAGC	3 cut(s)	308, 409, 418
Bsh1285I	CGRYCG	1 cut(s)	288
BshFI	GGCC	4 cut(s)	136, 287, 326, 448
BshNI	GGYRCC	2 cut(s)	177, 372
BsiEI	CGRYCG	1 cut(s)	288
BsiHKCI	CYCGRG	1 cut(s)	300
BsiSI	CCGG	4 cut(s)	133, 182, 386, 445
BslI	CCNNNNNNNGG	2 cut(s)	333, 451
BsmAI	GTCTC	2 cut(s)	164, 431
BsmBI	CGTCTC	2 cut(s)	164, 431
BsnI	GGCC	4 cut(s)	136, 287, 326, 448
BsoBI	CYCGRG	1 cut(s)	300
Bsp143I	GATC	1 cut(s)	9
BspANI	GGCC	4 cut(s)	136, 287, 326, 448
BspLI	GGNNCC	2 cut(s)	179, 374
BspT107I	GGYRCC	2 cut(s)	177, 372
BsrBI	CCGCTC	1 cut(s)	149
BsrDI	GCAATG	1 cut(s)	682
BsrFI	RCCGGY	1 cut(s)	132
BsrI	ACTGG	1 cut(s)	662
BssAI	RCCGGY	1 cut(s)	132
BssECI	CCNNGG	1 cut(s)	587
BssMI	GATC	1 cut(s)	9
BssNI	GRCGYC	3 cut(s)	125, 373, 684
BssT1I	CCWWGG	1 cut(s)	587
Bst6I	CTCTTC	1 cut(s)	643
BstACI	GRCGYC	3 cut(s)	125, 373, 684
BstC8I	GCNNGC	9 cut(s)	89, 93, 134, 147, 342, 346, 377, 450, 673
BstF5I	GGATG	3 cut(s)	389, 568, 667
BstH2I	RGCGCY	1 cut(s)	376
BstHHI	GCGC	2 cut(s)	307, 375
BstKTI	GATC	1 cut(s)	12
BstMAI	GTCTC	2 cut(s)	164, 431
BstMBI	GATC	1 cut(s)	9
BstMCI	CGRYCG	1 cut(s)	288
BstMWI	GCNNNNNNNGC	8 cut(s)	142, 293, 302, 323, 365, 428, 431, 592
BstNSI	RCATGY	1 cut(s)	586
BstPAI	GACNNNNGTC	1 cut(s)	687
BstSCI	CCNGG	1 cut(s)	180
BstV1I	GCAGC	3 cut(s)	308, 409, 418
BstZI	CGGCCG	1 cut(s)	285
BsuRI	GGCC	4 cut(s)	136, 287, 326, 448
BtgZI	GCGATG	1 cut(s)	495
BtrI	CACGTC	2 cut(s)	313, 667
BtsCI	GGATG	3 cut(s)	389, 568, 667
BtsIMutI	CAGTG	1 cut(s)	408
Cac8I	GCNNGC	9 cut(s)	89, 93, 134, 147, 342, 346, 377, 450, 673
CfoI	GCGC	2 cut(s)	307, 375
Cfr10I	RCCGGY	1 cut(s)	132
CseI	GACGC	1 cut(s)	114
Csp6I	GTAC	1 cut(s)	18
CviAII	CATG	4 cut(s)	308, 369, 583, 652
CviQI	GTAC	1 cut(s)	18
DinI	GGCGCC	1 cut(s)	374
DpnI	GATC	1 cut(s)	11
DpnII	GATC	1 cut(s)	9
DrdI	GACNNNNNNGTC	1 cut(s)	113
DseDI	GACNNNNNNGTC	1 cut(s)	113
EaeI	YGGCCR	3 cut(s)	134, 285, 446
EagI	CGGCCG	1 cut(s)	285
Eam1104I	CTCTTC	1 cut(s)	643
EarI	CTCTTC	1 cut(s)	643
EciI	GGCGGA	2 cut(s)	477, 623
EclXI	CGGCCG	1 cut(s)	285
Eco130I	CCWWGG	1 cut(s)	587
Eco32I	GATATC	1 cut(s)	409
Eco52I	CGGCCG	1 cut(s)	285
Eco57I	CTGAAG	1 cut(s)	624
Eco88I	CYCGRG	1 cut(s)	300
EcoRV	GATATC	1 cut(s)	409
EcoT14I	CCWWGG	1 cut(s)	587
EgeI	GGCGCC	1 cut(s)	374
EheI	GGCGCC	1 cut(s)	374
ErhI	CCWWGG	1 cut(s)	587
Esp3I	CGTCTC	2 cut(s)	164, 431
FaeI	CATG	4 cut(s)	311, 372, 586, 655
FaiI	YATR	6 cut(s)	265, 309, 370, 584, 605, 653
FatI	CATG	4 cut(s)	307, 368, 582, 651
FauI	CCCGC	1 cut(s)	142
Fnu4HI	GCNGC	6 cut(s)	297, 318, 420, 423, 432, 478
FokI	GGATG	3 cut(s)	376, 575, 674
Fsp4HI	GCNGC	6 cut(s)	297, 318, 420, 423, 432, 478
GlaI	GCGC	2 cut(s)	306, 374
GluI	GCNGC	6 cut(s)	297, 318, 420, 423, 432, 478
HaeII	RGCGCY	1 cut(s)	376
HaeIII	GGCC	4 cut(s)	136, 287, 326, 448
HapII	CCGG	4 cut(s)	133, 182, 386, 445
HgaI	GACGC	1 cut(s)	114
HhaI	GCGC	2 cut(s)	307, 375
Hin1I	GRCGYC	3 cut(s)	125, 373, 684
Hin1II	CATG	4 cut(s)	311, 372, 586, 655
Hin6I	GCGC	2 cut(s)	305, 373
HinP1I	GCGC	2 cut(s)	305, 373
HindIII	AAGCTT	1 cut(s)	338
HinfI	GANTC	5 cut(s)	32, 50, 362, 398, 546
HpaII	CCGG	4 cut(s)	133, 182, 386, 445
Hpy166II	GTNNAC	1 cut(s)	187
Hpy188I	TCNGA	7 cut(s)	31, 40, 61, 106, 272, 282, 413
Hpy8I	GTNNAC	1 cut(s)	187
Hpy99I	CGWCG	3 cut(s)	65, 110, 286
HpyAV	CCTTC	4 cut(s)	109, 484, 511, 605
HpyCH4IV	ACGT	4 cut(s)	312, 440, 666, 684
HpyCH4V	TGCA	1 cut(s)	359
HpyF10VI	GCNNNNNNNGC	8 cut(s)	142, 293, 302, 323, 365, 428, 431, 592
HpySE526I	ACGT	4 cut(s)	312, 440, 666, 684
Hsp92I	GRCGYC	3 cut(s)	125, 373, 684
Hsp92II	CATG	4 cut(s)	311, 372, 586, 655
HspAI	GCGC	2 cut(s)	305, 373
KasI	GGCGCC	1 cut(s)	372
KroI	GCCGGC	1 cut(s)	132
KroNI	GCCGGC	1 cut(s)	134
Kzo9I	GATC	1 cut(s)	9
LmnI	GCTCC	1 cut(s)	696
Lsp1109I	GCAGC	3 cut(s)	308, 409, 418
LweI	GCATC	2 cut(s)	81, 398
MaeII	ACGT	4 cut(s)	312, 440, 666, 684
MalI	GATC	1 cut(s)	11
MbiI	CCGCTC	1 cut(s)	149
MboI	GATC	1 cut(s)	9
MboII	GAAGA	3 cut(s)	4, 262, 630
MluCI	AATT	2 cut(s)	352, 705
Mly113I	GGCGCC	1 cut(s)	373
MlyI	GAGTC	1 cut(s)	356
MmeI	TCCRAC	4 cut(s)	84, 129, 305, 450
MroNI	GCCGGC	1 cut(s)	132
MroXI	GAANNNNTTC	1 cut(s)	615
MspA1I	CMGCKG	2 cut(s)	91, 452
MspI	CCGG	4 cut(s)	133, 182, 386, 445
MspR9I	CCNGG	1 cut(s)	182
MwoI	GCNNNNNNNGC	8 cut(s)	142, 293, 302, 323, 365, 428, 431, 592
NaeI	GCCGGC	1 cut(s)	134
NarI	GGCGCC	1 cut(s)	373
NciI	CCSGG	1 cut(s)	182
NdeII	GATC	1 cut(s)	9
NgoMIV	GCCGGC	1 cut(s)	132
NlaIII	CATG	4 cut(s)	311, 372, 586, 655
NlaIV	GGNNCC	2 cut(s)	179, 374
NmeAIII	GCCGAG	1 cut(s)	313
NspI	RCATGY	1 cut(s)	586
PdiI	GCCGGC	1 cut(s)	134
PdmI	GAANNNNTTC	1 cut(s)	615
PfeI	GAWTC	4 cut(s)	32, 50, 398, 546
PkrI	GCNGC	6 cut(s)	298, 319, 421, 424, 433, 479
PleI	GAGTC	1 cut(s)	356
PluTI	GGCGCC	1 cut(s)	376
PpsI	GAGTC	1 cut(s)	356
PshAI	GACNNNNGTC	1 cut(s)	687
PspN4I	GGNNCC	2 cut(s)	179, 374
PvuII	CAGCTG	1 cut(s)	91
RsaI	GTAC	1 cut(s)	19
RsaNI	GTAC	1 cut(s)	18
SatI	GCNGC	6 cut(s)	297, 318, 420, 423, 432, 478
Sau3AI	GATC	1 cut(s)	9
ScaI	AGTACT	1 cut(s)	19
SchI	GAGTC	1 cut(s)	356
ScrFI	CCNGG	1 cut(s)	182
SfaNI	GCATC	2 cut(s)	81, 398
SfoI	GGCGCC	1 cut(s)	374
Sse9I	AATT	2 cut(s)	352, 705
SspDI	GGCGCC	1 cut(s)	372
StyD4I	CCNGG	1 cut(s)	180
StyI	CCWWGG	1 cut(s)	587
TaiI	ACGT	4 cut(s)	315, 443, 669, 687
TaqI	TCGA	3 cut(s)	53, 257, 579
TasI	AATT	2 cut(s)	352, 705
TatI	WGTACW	1 cut(s)	17
TauI	GCSGC	3 cut(s)	320, 422, 480
TfiI	GAWTC	4 cut(s)	32, 50, 398, 546
TscAI	CASTG	1 cut(s)	408
TseI	GCWGC	3 cut(s)	296, 422, 431
TspDTI	ATGAA	2 cut(s)	17, 668
TspRI	CASTG	1 cut(s)	408
XceI	RCATGY	1 cut(s)	586
XcmI	CCANNNNNNNNNTGG	1 cut(s)	400
XmnI	GAANNNNTTC	1 cut(s)	615
ZraI	GACGTC	1 cut(s)	685
ZrmI	AGTACT	1 cut(s)	19

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.