Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0000958

Physical Location & Seq

Genomic Coordinates Reverse (-)

52856756 .. 52857586

Gene Structure 831 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003799

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGTACACTATCCCTAGTCGATCAGCTAAGAAAACCAGACCAGCTCTACCTCAGATGAATAGCTCCAATTACCAGCTCTCAGACTCCAACCAGAAAAGCCTCGAATCAGTCTCCTCCATCGACAATCCCGAGTCGTCTTCCTTATCTGACACGAGCGTCACGACTCGCCGTTCGCCTCATTCCGACGAAAAGGTGATACTAGCTTCTAGCAGGCCGAAGAAGCGAGCCGGTAGGCAAGTGTTCAAGGAGACTCGCCATCCTGTCTACCGCGGCGTGAGGCGCAGGAACAATAACAAGTGGGTGTGCGAGGTCAGGGAGCCAAACAAAAAGACCAGAATTTGGCTCGGGACATACCCGACGGTTGAGATGGCCGCTCGGGCACACGATGTGGCGGCATTGGCCCTTAGGGGGAAGCAGGCATGCCTCAATTTCGCTGATTCAGTGTGGCGGTTGCCCATTCCGGCTTCTAAAGACCAGCTCGACATTCGCAGGGCCGCCGCCGAGGCTGCTGAGACATTTCGACCTGAGGAATTCAGCGGCGTCTCAAGCAGCTGCGACGACAACGAGATGGAACATGAGAATGAGAAAATTGAGAGGGAACACGGGAAGCAGAATGATGGCTTCTACGAGGACGAGGAGAGGGAACACGAGAATGAGAAGAAGAACGACGGCTTCTACGAGGATGAAGAGGCGCTCTTCGACATGTCCAGATTGCTGACTAGCATGGCGGAGGGTCCACTGCTCTCTCCACCTCGTCATTACTTGGACAGTGTGAACTGGTCAGACTATCAAGTGGAAAGCGAGTCAAATTTCAGTTTGTGGAGCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0001558 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009889 GO:0009987 GO:0010035 GO:0010371 GO:0010468 GO:0010556 GO:0010565 GO:0010817 GO:0016143 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0019748 GO:0019757 GO:0019760 GO:0022603 GO:0022604 GO:0031323 GO:0031326 GO:0032350 GO:0040008 GO:0040034 GO:0042221 GO:0043436 GO:0043455 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0046885 GO:0046890 GO:0048506 GO:0048509 GO:0048510 GO:0048638 GO:0050789 GO:0050793 GO:0050794 GO:0050826 GO:0050896 GO:0051128 GO:0051171 GO:0051252 GO:0051510 GO:0060255 GO:0062012 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

277

Amino Acids

31.67

Weight (kDa)

5.76

Isoelectric Point (pI)

65.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	87 - 137	6.6e-16	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000958)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12610 AT1G63030 AT1G63030
fragaria_vesca	FvH4_5g01440
malus_domestica	MD04G1067800.v1.1 MD04G1067900.v1.1 MD06G1072300.v1.1
prunus_persica	Prupe.5G089900_v2.0.a1 Prupe.5G090000_v2.0.a1 Prupe.5G090100_v2.0.a1 Prupe.5G090200_v2.0.a1 Prupe.5G090500_v2.0.a1
pyrus_communis	pycom04g06140 pycom06g07110 pycom06g07120
rosa_chinensis	RchiOBHm_Chr7g0199251 RchiOBHm_Chr7g0199301 RchiOBHm_Chr7g0199331 RchiOBHm_Chr7g0199351 RchiOBHm_Chr7g0199381
rosa_laevigata	RLG00000002739 RLG00000002740 RLG00000003796 RLG00000003799 RLG00000003801
rosa_multiflora	Rmu_co8046292.1_g000001 Rmu_co8280319.1_g000001 Rmu_sc0000855.1_g000009 Rmu_sc0000950.1_g000001 Rmu_sc0000950.1_g000005 Rmu_sc0007820.1_g000002 Rmu_sc0010720.1_g000001 Rmu_sc0039534.1_g000001
rosa_roxburghii	Rroxscaffold_3G00256750 Rroxscaffold_3G00256770 Rroxscaffold_3G00256870 Rroxscaffold_5G00359530
rosa_rugosa	Rorug07G0053500 Rorug07G0053500 Rorug07G0053500 Rorug07G0053800
rosa_samantha	Rh4BG264100 Rh7AG177700 Rh7AG177900 Rh7AG178000 Rh7AG178100 Rh7AG178600 Rh7BG181300 Rh7BG181400 Rh7BG181600 Rh7BG181900 Rh7BG182100 Rh7CG186800 Rh7CG187000 Rh7CG187200 Rh7CG187400 Rh7DG180800 Rh7DG181700
rosa_wichuraiana	Rw7G015620 Rw7G015630 Rw7G015650 Rw7G015670 Rw7G015680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	155
AccB7I	CCANNNNNTGG	1 cut(s)	339
AccBSI	CCGCTC	1 cut(s)	374
AccI	GTMKAC	1 cut(s)	264
AccII	CGCG	1 cut(s)	270
AciI	CCGC	9 cut(s)	268, 270, 372, 392, 448, 495, 498, 537, 728
AcoI	YGGCCR	1 cut(s)	369
AcsI	RAATTY	3 cut(s)	336, 530, 808
AcyI	GRCGYC	1 cut(s)	540
AdeI	CACNNNGTG	1 cut(s)	388
AfaI	GTAC	1 cut(s)	5
AfiI	CCNNNNNNNGG	2 cut(s)	339, 408
AflIII	ACRYGT	1 cut(s)	702
AgsI	TTSAA	1 cut(s)	244
AluBI	AGCT	8 cut(s)	26, 44, 63, 76, 203, 478, 552, 825
AluI	AGCT	8 cut(s)	26, 44, 63, 76, 203, 478, 552, 825
Alw26I	GTCTC	4 cut(s)	115, 242, 506, 547
Ama87I	CYCGRG	3 cut(s)	128, 344, 375
AoxI	GGCC	4 cut(s)	212, 369, 399, 492
ApeKI	GCWGC	3 cut(s)	506, 549, 552
ApoI	RAATTY	3 cut(s)	336, 530, 808
ArsI	GACNNNNNNTTYG	2 cut(s)	154, 186
AspLEI	GCGC	2 cut(s)	282, 694
AspS9I	GGNCC	3 cut(s)	400, 492, 734
AsuHPI	GGTGA	1 cut(s)	205
AvaI	CYCGRG	3 cut(s)	128, 344, 375
AvaII	GGWCC	1 cut(s)	734
AxyI	CCTNAGG	2 cut(s)	404, 525
BaeGI	GKGCMC	1 cut(s)	382
BauI	CACGAG	2 cut(s)	151, 647
BbsI	GAAGAC	1 cut(s)	129
BbvI	GCAGC	3 cut(s)	493, 539, 561
BccI	CCATC	5 cut(s)	125, 264, 361, 562, 611
BceAI	ACGGC	2 cut(s)	153, 685
BcoDI	GTCTC	4 cut(s)	115, 242, 506, 547
BfaI	CTAG	4 cut(s)	15, 200, 207, 720
BfoI	RGCGCY	1 cut(s)	695
BglI	GCCNNNNNGGC	2 cut(s)	377, 503
BisI	GCNGC	9 cut(s)	271, 372, 393, 495, 498, 507, 538, 550, 553
BlsI	GCNGC	9 cut(s)	272, 373, 394, 496, 499, 508, 539, 551, 554
Bme18I	GGWCC	1 cut(s)	734
BmeT110I	CYCGRG	3 cut(s)	128, 344, 375
BmgT120I	GGNCC	3 cut(s)	400, 492, 734
BmiI	GGNNCC	2 cut(s)	318, 735
BpiI	GAAGAC	1 cut(s)	129
BpuEI	CTTGAG	1 cut(s)	529
BsaHI	GRCGYC	1 cut(s)	540
BsaJI	CCNNGG	2 cut(s)	268, 501
Bsc4I	CCNNNNNNNGG	2 cut(s)	339, 408
Bse118I	RCCGGY	1 cut(s)	227
Bse1I	ACTGG	1 cut(s)	782
Bse21I	CCTNAGG	2 cut(s)	404, 525
BseDI	CCNNGG	2 cut(s)	268, 501
BseGI	GGATG	2 cut(s)	256, 688
BseLI	CCNNNNNNNGG	2 cut(s)	339, 408
BseMII	CTCAG	4 cut(s)	65, 93, 501, 516
BseNI	ACTGG	1 cut(s)	782
BseRI	GAGGAG	2 cut(s)	103, 650
BseSI	GKGCMC	1 cut(s)	382
BseXI	GCAGC	3 cut(s)	493, 539, 561
Bsh1236I	CGCG	1 cut(s)	270
BshFI	GGCC	4 cut(s)	214, 371, 401, 494
BsiHKCI	CYCGRG	3 cut(s)	128, 344, 375
BsiSI	CCGG	2 cut(s)	228, 461
BslFI	GGGAC	1 cut(s)	361
BslI	CCNNNNNNNGG	2 cut(s)	339, 408
BsmAI	GTCTC	4 cut(s)	115, 242, 506, 547
BsmBI	CGTCTC	1 cut(s)	547
BsmFI	GGGAC	1 cut(s)	361
BsnI	GGCC	4 cut(s)	214, 371, 401, 494
BsoBI	CYCGRG	3 cut(s)	128, 344, 375
Bsp1286I	GDGCHC	1 cut(s)	382
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	1 cut(s)	20
BspACI	CCGC	9 cut(s)	268, 270, 372, 392, 448, 495, 498, 537, 728
BspANI	GGCC	4 cut(s)	214, 371, 401, 494
BspCNI	CTCAG	4 cut(s)	64, 92, 502, 517
BspFNI	CGCG	1 cut(s)	270
BspLI	GGNNCC	2 cut(s)	318, 735
BspQI	GCTCTTC	1 cut(s)	701
BsrBI	CCGCTC	1 cut(s)	374
BsrFI	RCCGGY	1 cut(s)	227
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	1 cut(s)	782
BssAI	RCCGGY	1 cut(s)	227
BssECI	CCNNGG	2 cut(s)	268, 501
BssMI	GATC	1 cut(s)	20
BssNI	GRCGYC	1 cut(s)	540
BssSI	CACGAG	2 cut(s)	151, 647
Bst2BI	CACGAG	2 cut(s)	151, 647
Bst4CI	ACNGT	2 cut(s)	361, 770
Bst6I	CTCTTC	2 cut(s)	681, 701
BstACI	GRCGYC	1 cut(s)	540
BstAUI	TGTACA	1 cut(s)	3
BstC8I	GCNNGC	4 cut(s)	212, 225, 417, 421
BstDEI	CTNAG	6 cut(s)	27, 51, 79, 404, 510, 525
BstDSI	CCRYGG	1 cut(s)	268
BstF5I	GGATG	2 cut(s)	256, 688
BstFNI	CGCG	1 cut(s)	270
BstH2I	RGCGCY	1 cut(s)	695
BstHHI	GCGC	2 cut(s)	282, 694
BstKTI	GATC	1 cut(s)	23
BstMAI	GTCTC	4 cut(s)	115, 242, 506, 547
BstMBI	GATC	1 cut(s)	20
BstMWI	GCNNNNNNNGC	7 cut(s)	220, 279, 377, 398, 503, 506, 546
BstNSI	RCATGY	2 cut(s)	423, 706
BstSLI	GKGCMC	1 cut(s)	382
BstUI	CGCG	1 cut(s)	270
BstV1I	GCAGC	3 cut(s)	493, 539, 561
BstV2I	GAAGAC	1 cut(s)	129
Bsu36I	CCTNAGG	2 cut(s)	404, 525
BsuRI	GGCC	4 cut(s)	214, 371, 401, 494
BtgI	CCRYGG	1 cut(s)	268
BtsCI	GGATG	2 cut(s)	256, 688
BtsI	GCAGTG	1 cut(s)	737
BtsIMutI	CAGTG	3 cut(s)	447, 737, 775
Cac8I	GCNNGC	4 cut(s)	212, 225, 417, 421
CfoI	GCGC	2 cut(s)	282, 694
Cfr10I	RCCGGY	1 cut(s)	227
Cfr13I	GGNCC	3 cut(s)	400, 492, 734
Cfr42I	CCGCGG	1 cut(s)	271
CseI	GACGC	2 cut(s)	145, 529
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	4 cut(s)	420, 575, 703, 724
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	6 cut(s)	27, 51, 79, 404, 510, 525
DpnI	GATC	1 cut(s)	22
DpnII	GATC	1 cut(s)	20
DraIII	CACNNNGTG	1 cut(s)	388
DrdI	GACNNNNNNGTC	1 cut(s)	155
DseDI	GACNNNNNNGTC	1 cut(s)	155
EaeI	YGGCCR	1 cut(s)	369
Eam1104I	CTCTTC	2 cut(s)	681, 701
EarI	CTCTTC	2 cut(s)	681, 701
EciI	GGCGGA	1 cut(s)	743
Eco47I	GGWCC	1 cut(s)	734
Eco81I	CCTNAGG	2 cut(s)	404, 525
Eco88I	CYCGRG	3 cut(s)	128, 344, 375
EcoRI	GAATTC	1 cut(s)	530
Esp3I	CGTCTC	1 cut(s)	547
FaeI	CATG	4 cut(s)	423, 578, 706, 727
FaiI	YATR	5 cut(s)	352, 421, 576, 704, 725
FaqI	GGGAC	1 cut(s)	361
FatI	CATG	4 cut(s)	419, 574, 702, 723
FblI	GTMKAC	1 cut(s)	264
Fnu4HI	GCNGC	9 cut(s)	271, 372, 393, 495, 498, 507, 538, 550, 553
FokI	GGATG	2 cut(s)	243, 695
Fsp4HI	GCNGC	9 cut(s)	271, 372, 393, 495, 498, 507, 538, 550, 553
FspBI	CTAG	4 cut(s)	15, 200, 207, 720
GlaI	GCGC	2 cut(s)	281, 693
GluI	GCNGC	9 cut(s)	271, 372, 393, 495, 498, 507, 538, 550, 553
HaeII	RGCGCY	1 cut(s)	695
HaeIII	GGCC	4 cut(s)	214, 371, 401, 494
HapII	CCGG	2 cut(s)	228, 461
HgaI	GACGC	2 cut(s)	145, 529
HhaI	GCGC	2 cut(s)	282, 694
Hin1I	GRCGYC	1 cut(s)	540
Hin1II	CATG	4 cut(s)	423, 578, 706, 727
Hin6I	GCGC	2 cut(s)	280, 692
HinP1I	GCGC	2 cut(s)	280, 692
HinfI	GANTC	7 cut(s)	83, 104, 131, 163, 250, 437, 803
HpaII	CCGG	2 cut(s)	228, 461
HphI	GGTGA	1 cut(s)	205
Hpy166II	GTNNAC	4 cut(s)	6, 265, 737, 775
Hpy188I	TCNGA	6 cut(s)	54, 82, 148, 184, 784, 830
Hpy188III	TCNNGA	4 cut(s)	128, 160, 346, 708
Hpy8I	GTNNAC	4 cut(s)	6, 265, 737, 775
Hpy99I	CGWCG	4 cut(s)	188, 361, 560, 671
HpyCH4III	ACNGT	2 cut(s)	361, 770
HpyF10VI	GCNNNNNNNGC	7 cut(s)	220, 279, 377, 398, 503, 506, 546
HpyF3I	CTNAG	6 cut(s)	27, 51, 79, 404, 510, 525
Hsp92I	GRCGYC	1 cut(s)	540
Hsp92II	CATG	4 cut(s)	423, 578, 706, 727
HspAI	GCGC	2 cut(s)	280, 692
KspI	CCGCGG	1 cut(s)	271
Kzo9I	GATC	1 cut(s)	20
LguI	GCTCTTC	1 cut(s)	701
LmnI	GCTCC	3 cut(s)	68, 316, 822
Lsp1109I	GCAGC	3 cut(s)	493, 539, 561
MaeI	CTAG	4 cut(s)	15, 200, 207, 720
MaeIII	GTNAC	1 cut(s)	157
MalI	GATC	1 cut(s)	22
MbiI	CCGCTC	1 cut(s)	374
MboI	GATC	1 cut(s)	20
MboII	GAAGA	6 cut(s)	129, 229, 670, 673, 688, 698
MhlI	GDGCHC	1 cut(s)	382
MluCI	AATT	6 cut(s)	67, 336, 427, 530, 588, 808
MlyI	GAGTC	5 cut(s)	77, 140, 157, 244, 812
MmeI	TCCRAC	2 cut(s)	111, 207
MslI	CAYNNNNRTG	2 cut(s)	579, 651
MspA1I	CMGCKG	3 cut(s)	270, 537, 552
MspI	CCGG	2 cut(s)	228, 461
MvnI	CGCG	1 cut(s)	270
MwoI	GCNNNNNNNGC	7 cut(s)	220, 279, 377, 398, 503, 506, 546
NdeII	GATC	1 cut(s)	20
NlaIII	CATG	4 cut(s)	423, 578, 706, 727
NlaIV	GGNNCC	2 cut(s)	318, 735
NmeAIII	GCCGAG	1 cut(s)	526
NmuCI	GTSAC	1 cut(s)	157
NspI	RCATGY	2 cut(s)	423, 706
PaeI	GCATGC	1 cut(s)	423
PciI	ACATGT	1 cut(s)	702
PciSI	GCTCTTC	1 cut(s)	701
PcsI	WCGNNNNNNNCGW	3 cut(s)	126, 158, 675
PfeI	GAWTC	2 cut(s)	104, 437
PflMI	CCANNNNNTGG	1 cut(s)	339
PkrI	GCNGC	9 cut(s)	272, 373, 394, 496, 499, 508, 539, 551, 554
PleI	GAGTC	5 cut(s)	77, 139, 157, 244, 811
PpsI	GAGTC	5 cut(s)	77, 139, 157, 244, 811
PscI	ACATGT	1 cut(s)	702
PspN4I	GGNNCC	2 cut(s)	318, 735
PspPI	GGNCC	3 cut(s)	400, 492, 734
PvuII	CAGCTG	1 cut(s)	552
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
RseI	CAYNNNNRTG	2 cut(s)	579, 651
SacII	CCGCGG	1 cut(s)	271
SapI	GCTCTTC	1 cut(s)	701
SatI	GCNGC	9 cut(s)	271, 372, 393, 495, 498, 507, 538, 550, 553
Sau3AI	GATC	1 cut(s)	20
Sau96I	GGNCC	3 cut(s)	400, 492, 734
SchI	GAGTC	5 cut(s)	77, 140, 157, 244, 812
SduI	GDGCHC	1 cut(s)	382
Sfr303I	CCGCGG	1 cut(s)	271
SgrBI	CCGCGG	1 cut(s)	271
SinI	GGWCC	1 cut(s)	734
SmiMI	CAYNNNNRTG	2 cut(s)	579, 651
SmlI	CTYRAG	1 cut(s)	544
SmoI	CTYRAG	1 cut(s)	544
SphI	GCATGC	1 cut(s)	423
Sse9I	AATT	6 cut(s)	67, 336, 427, 530, 588, 808
SsiI	CCGC	9 cut(s)	268, 270, 372, 392, 448, 495, 498, 537, 728
SspMI	CTAG	4 cut(s)	15, 200, 207, 720
TaaI	ACNGT	2 cut(s)	361, 770
TaqI	TCGA	6 cut(s)	19, 102, 120, 480, 520, 699
TasI	AATT	6 cut(s)	67, 336, 427, 530, 588, 808
TatI	WGTACW	1 cut(s)	3
TauI	GCSGC	6 cut(s)	273, 374, 395, 497, 500, 540
TfiI	GAWTC	2 cut(s)	104, 437
TscAI	CASTG	3 cut(s)	447, 744, 775
TseFI	GTSAC	1 cut(s)	157
TseI	GCWGC	3 cut(s)	506, 549, 552
Tsp45I	GTSAC	1 cut(s)	157
TspDTI	ATGAA	2 cut(s)	71, 699
TspRI	CASTG	3 cut(s)	447, 744, 775
Van91I	CCANNNNNTGG	1 cut(s)	339
VpaK11BI	GGWCC	1 cut(s)	734
XapI	RAATTY	3 cut(s)	336, 530, 808
XceI	RCATGY	2 cut(s)	423, 706
XmiI	GTMKAC	1 cut(s)	264
XspI	CTAG	4 cut(s)	15, 200, 207, 720

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.