Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0000958

Physical Location & Seq

Genomic Coordinates Reverse (-)

52873942 .. 52874664

Gene Structure 723 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003801

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGAACTCCAATTACCAGCTCTCACACTCCAACCAGCAAAGCCTCGAATCAGTCTCCTCCATCAGCAAGCCCGAGTCGTCTTCCTTATCTGACACGAGCTTCAAGACTCGCCGTTCACCTCATTCTGACGAAGCGGTGATACTAGCTTCGAGCAGGCCGAAGAAGCGAGCCGGAAGGCGAGTGTTCAAGGAGACTCGCCACCCGGTCTACCGAGGCGTCCGGCGCAGGAACAATAACAAGTGGGTGTGCGAGGTCAGGGAGCCGAACAAAAAGACCAGAATTTGGCTCGGGACGTACCCAACTCTTGAGATGGCCGCTCGGGCGCACGATGTGGCGGCTTTGGCCCTTAGGGGGAAGCAGGCATGCCTCAATTTCGCTGATTCCTCGTGGCGCTTGCCCGTTCCGGCTTCTAAAGACCAGCTCGACATTCGCAGGGCCGCCGCCGAGGCTGCTGAGACATTTCGACCTGAGGAATTCGGCGGCGTCTCAAGCAGCTGCGACGACAGCGAGATAGAAAATGAGAATGAGAATGTTGAGATGGACAACGAGAAGAAGAACGACGGCTTCTACGAGGATGAAGAGGCGCTCTTCGACATGCCCAGATTGCTGACTAGCATGGCGGAGGGTCCACTGCTCTCTCCGCCTCGTCATTACTTGGACAGTATGAACTGGGCAGACGATCAGGTGGAAAGCGAGTCAAATTTCAGCCTGTGGAGCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0001558 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009889 GO:0009987 GO:0010035 GO:0010371 GO:0010468 GO:0010556 GO:0010565 GO:0010817 GO:0016143 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0019748 GO:0019757 GO:0019760 GO:0022603 GO:0022604 GO:0031323 GO:0031326 GO:0032350 GO:0040008 GO:0040034 GO:0042221 GO:0043436 GO:0043455 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0046885 GO:0046890 GO:0048506 GO:0048509 GO:0048510 GO:0048638 GO:0050789 GO:0050793 GO:0050794 GO:0050826 GO:0050896 GO:0051128 GO:0051171 GO:0051252 GO:0051510 GO:0060255 GO:0062012 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

241

Amino Acids

27.31

Weight (kDa)

5.67

Isoelectric Point (pI)

70.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	68 - 118	4.8e-16	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000958)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12610 AT1G63030 AT1G63030
fragaria_vesca	FvH4_5g01440
malus_domestica	MD04G1067800.v1.1 MD04G1067900.v1.1 MD06G1072300.v1.1
prunus_persica	Prupe.5G089900_v2.0.a1 Prupe.5G090000_v2.0.a1 Prupe.5G090100_v2.0.a1 Prupe.5G090200_v2.0.a1 Prupe.5G090500_v2.0.a1
pyrus_communis	pycom04g06140 pycom06g07110 pycom06g07120
rosa_chinensis	RchiOBHm_Chr7g0199251 RchiOBHm_Chr7g0199301 RchiOBHm_Chr7g0199331 RchiOBHm_Chr7g0199351 RchiOBHm_Chr7g0199381
rosa_laevigata	RLG00000002739 RLG00000002740 RLG00000003796 RLG00000003799 RLG00000003801
rosa_multiflora	Rmu_co8046292.1_g000001 Rmu_co8280319.1_g000001 Rmu_sc0000855.1_g000009 Rmu_sc0000950.1_g000001 Rmu_sc0000950.1_g000005 Rmu_sc0007820.1_g000002 Rmu_sc0010720.1_g000001 Rmu_sc0039534.1_g000001
rosa_roxburghii	Rroxscaffold_3G00256750 Rroxscaffold_3G00256770 Rroxscaffold_3G00256870 Rroxscaffold_5G00359530
rosa_rugosa	Rorug07G0053500 Rorug07G0053500 Rorug07G0053500 Rorug07G0053800
rosa_samantha	Rh4BG264100 Rh7AG177700 Rh7AG177900 Rh7AG178000 Rh7AG178100 Rh7AG178600 Rh7BG181300 Rh7BG181400 Rh7BG181600 Rh7BG181900 Rh7BG182100 Rh7CG186800 Rh7CG187000 Rh7CG187200 Rh7CG187400 Rh7DG180800 Rh7DG181700
rosa_wichuraiana	Rw7G015620 Rw7G015630 Rw7G015650 Rw7G015670 Rw7G015680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	282
AccBSI	CCGCTC	1 cut(s)	317
AccI	GTMKAC	1 cut(s)	207
AciI	CCGC	8 cut(s)	134, 315, 335, 438, 441, 480, 620, 641
AcoI	YGGCCR	1 cut(s)	312
AcsI	RAATTY	3 cut(s)	279, 473, 700
AcyI	GRCGYC	2 cut(s)	216, 483
AdeI	CACNNNGTG	1 cut(s)	331
AfaI	GTAC	1 cut(s)	296
AfiI	CCNNNNNNNGG	2 cut(s)	282, 351
AgsI	TTSAA	2 cut(s)	103, 187
AluBI	AGCT	6 cut(s)	19, 99, 146, 421, 495, 717
AluI	AGCT	6 cut(s)	19, 99, 146, 421, 495, 717
Alw26I	GTCTC	4 cut(s)	58, 185, 449, 490
Ama87I	CYCGRG	3 cut(s)	71, 287, 318
AoxI	GGCC	4 cut(s)	155, 312, 342, 435
ApeKI	GCWGC	3 cut(s)	449, 492, 495
ApoI	RAATTY	3 cut(s)	279, 473, 700
AspLEI	GCGC	4 cut(s)	225, 325, 393, 586
AspS9I	GGNCC	3 cut(s)	343, 435, 626
AsuC2I	CCSGG	1 cut(s)	203
AsuHPI	GGTGA	2 cut(s)	108, 148
AvaI	CYCGRG	3 cut(s)	71, 287, 318
AvaII	GGWCC	1 cut(s)	626
AxyI	CCTNAGG	2 cut(s)	347, 468
BarI	GAAGNNNNNNTAC	2 cut(s)	123, 155
BauI	CACGAG	2 cut(s)	94, 385
BbsI	GAAGAC	1 cut(s)	72
BbvI	GCAGC	3 cut(s)	436, 482, 504
BccI	CCATC	3 cut(s)	68, 304, 532
BceAI	ACGGC	2 cut(s)	96, 577
BcnI	CCSGG	1 cut(s)	203
BcoDI	GTCTC	4 cut(s)	58, 185, 449, 490
BfaI	CTAG	2 cut(s)	143, 612
BfoI	RGCGCY	2 cut(s)	394, 587
BglI	GCCNNNNNGGC	2 cut(s)	320, 446
BisI	GCNGC	8 cut(s)	315, 336, 438, 441, 450, 481, 493, 496
BlsI	GCNGC	8 cut(s)	316, 337, 439, 442, 451, 482, 494, 497
Bme1390I	CCNGG	1 cut(s)	203
Bme18I	GGWCC	1 cut(s)	626
BmeT110I	CYCGRG	3 cut(s)	71, 287, 318
BmgT120I	GGNCC	3 cut(s)	343, 435, 626
BmiI	GGNNCC	2 cut(s)	261, 627
BmrFI	CCNGG	1 cut(s)	203
BmrI	ACTGGG	1 cut(s)	679
BmuI	ACTGGG	1 cut(s)	679
BpiI	GAAGAC	1 cut(s)	72
BpuEI	CTTGAG	2 cut(s)	326, 472
BpuMI	CCSGG	1 cut(s)	203
BsaHI	GRCGYC	2 cut(s)	216, 483
BsaJI	CCNNGG	2 cut(s)	211, 444
Bsc4I	CCNNNNNNNGG	2 cut(s)	282, 351
Bse1I	ACTGG	1 cut(s)	674
Bse21I	CCTNAGG	2 cut(s)	347, 468
BseDI	CCNNGG	2 cut(s)	211, 444
BseGI	GGATG	1 cut(s)	580
BseLI	CCNNNNNNNGG	2 cut(s)	282, 351
BseMII	CTCAG	2 cut(s)	444, 459
BseNI	ACTGG	1 cut(s)	674
BseRI	GAGGAG	1 cut(s)	46
BseXI	GCAGC	3 cut(s)	436, 482, 504
BshFI	GGCC	4 cut(s)	157, 314, 344, 437
BsiHKCI	CYCGRG	3 cut(s)	71, 287, 318
BsiSI	CCGG	4 cut(s)	171, 203, 220, 404
BslFI	GGGAC	1 cut(s)	304
BslI	CCNNNNNNNGG	2 cut(s)	282, 351
BsmAI	GTCTC	4 cut(s)	58, 185, 449, 490
BsmBI	CGTCTC	1 cut(s)	490
BsmFI	GGGAC	1 cut(s)	304
BsnI	GGCC	4 cut(s)	157, 314, 344, 437
BsoBI	CYCGRG	3 cut(s)	71, 287, 318
Bsp143I	GATC	1 cut(s)	679
BspACI	CCGC	8 cut(s)	134, 315, 335, 438, 441, 480, 620, 641
BspANI	GGCC	4 cut(s)	157, 314, 344, 437
BspCNI	CTCAG	2 cut(s)	445, 460
BspLI	GGNNCC	2 cut(s)	261, 627
BspQI	GCTCTTC	1 cut(s)	593
BsrBI	CCGCTC	1 cut(s)	317
BsrI	ACTGG	1 cut(s)	674
BssECI	CCNNGG	2 cut(s)	211, 444
BssMI	GATC	1 cut(s)	679
BssNI	GRCGYC	2 cut(s)	216, 483
BssSI	CACGAG	2 cut(s)	94, 385
Bst2BI	CACGAG	2 cut(s)	94, 385
Bst4CI	ACNGT	1 cut(s)	662
Bst6I	CTCTTC	2 cut(s)	573, 593
BstACI	GRCGYC	2 cut(s)	216, 483
BstC8I	GCNNGC	6 cut(s)	68, 155, 168, 360, 364, 395
BstDEI	CTNAG	3 cut(s)	347, 453, 468
BstF5I	GGATG	1 cut(s)	580
BstH2I	RGCGCY	2 cut(s)	394, 587
BstHHI	GCGC	4 cut(s)	225, 325, 393, 586
BstKTI	GATC	1 cut(s)	682
BstMAI	GTCTC	4 cut(s)	58, 185, 449, 490
BstMBI	GATC	1 cut(s)	679
BstNSI	RCATGY	2 cut(s)	366, 598
BstSCI	CCNGG	1 cut(s)	201
BstV1I	GCAGC	3 cut(s)	436, 482, 504
BstV2I	GAAGAC	1 cut(s)	72
Bsu36I	CCTNAGG	2 cut(s)	347, 468
BsuRI	GGCC	4 cut(s)	157, 314, 344, 437
BtsCI	GGATG	1 cut(s)	580
BtsI	GCAGTG	1 cut(s)	629
BtsIMutI	CAGTG	1 cut(s)	629
Cac8I	GCNNGC	6 cut(s)	68, 155, 168, 360, 364, 395
CfoI	GCGC	4 cut(s)	225, 325, 393, 586
Cfr13I	GGNCC	3 cut(s)	343, 435, 626
CseI	GACGC	2 cut(s)	205, 472
Csp6I	GTAC	1 cut(s)	295
CviAII	CATG	3 cut(s)	363, 595, 616
CviQI	GTAC	1 cut(s)	295
DdeI	CTNAG	3 cut(s)	347, 453, 468
DpnI	GATC	1 cut(s)	681
DpnII	GATC	1 cut(s)	679
DraIII	CACNNNGTG	1 cut(s)	331
EaeI	YGGCCR	1 cut(s)	312
Eam1104I	CTCTTC	2 cut(s)	573, 593
EarI	CTCTTC	2 cut(s)	573, 593
EciI	GGCGGA	2 cut(s)	630, 635
Eco47I	GGWCC	1 cut(s)	626
Eco81I	CCTNAGG	2 cut(s)	347, 468
Eco88I	CYCGRG	3 cut(s)	71, 287, 318
EcoRI	GAATTC	1 cut(s)	473
Esp3I	CGTCTC	1 cut(s)	490
FaeI	CATG	3 cut(s)	366, 598, 619
FaiI	YATR	4 cut(s)	364, 596, 617, 665
FaqI	GGGAC	1 cut(s)	304
FatI	CATG	3 cut(s)	362, 594, 615
FblI	GTMKAC	1 cut(s)	207
Fnu4HI	GCNGC	8 cut(s)	315, 336, 438, 441, 450, 481, 493, 496
FokI	GGATG	1 cut(s)	587
Fsp4HI	GCNGC	8 cut(s)	315, 336, 438, 441, 450, 481, 493, 496
FspBI	CTAG	2 cut(s)	143, 612
GlaI	GCGC	4 cut(s)	224, 324, 392, 585
GluI	GCNGC	8 cut(s)	315, 336, 438, 441, 450, 481, 493, 496
HaeII	RGCGCY	2 cut(s)	394, 587
HaeIII	GGCC	4 cut(s)	157, 314, 344, 437
HapII	CCGG	4 cut(s)	171, 203, 220, 404
HgaI	GACGC	2 cut(s)	205, 472
HhaI	GCGC	4 cut(s)	225, 325, 393, 586
Hin1I	GRCGYC	2 cut(s)	216, 483
Hin1II	CATG	3 cut(s)	366, 598, 619
Hin6I	GCGC	4 cut(s)	223, 323, 391, 584
HinP1I	GCGC	4 cut(s)	223, 323, 391, 584
HinfI	GANTC	6 cut(s)	47, 74, 106, 193, 380, 695
HpaII	CCGG	4 cut(s)	171, 203, 220, 404
HphI	GGTGA	2 cut(s)	108, 148
Hpy166II	GTNNAC	3 cut(s)	116, 208, 629
Hpy188I	TCNGA	2 cut(s)	91, 127
Hpy188III	TCNNGA	3 cut(s)	103, 289, 305
Hpy8I	GTNNAC	3 cut(s)	116, 208, 629
Hpy99I	CGWCG	2 cut(s)	503, 563
HpyAV	CCTTC	1 cut(s)	168
HpyCH4III	ACNGT	1 cut(s)	662
HpyCH4IV	ACGT	1 cut(s)	293
HpyF3I	CTNAG	3 cut(s)	347, 453, 468
HpySE526I	ACGT	1 cut(s)	293
Hsp92I	GRCGYC	2 cut(s)	216, 483
Hsp92II	CATG	3 cut(s)	366, 598, 619
HspAI	GCGC	4 cut(s)	223, 323, 391, 584
Kzo9I	GATC	1 cut(s)	679
LguI	GCTCTTC	1 cut(s)	593
LmnI	GCTCC	2 cut(s)	259, 714
Lsp1109I	GCAGC	3 cut(s)	436, 482, 504
MaeI	CTAG	2 cut(s)	143, 612
MaeII	ACGT	1 cut(s)	293
MalI	GATC	1 cut(s)	681
MbiI	CCGCTC	1 cut(s)	317
MboI	GATC	1 cut(s)	679
MboII	GAAGA	6 cut(s)	72, 172, 562, 565, 580, 590
MluCI	AATT	5 cut(s)	10, 279, 370, 473, 700
MlyI	GAGTC	4 cut(s)	83, 100, 187, 704
MmeI	TCCRAC	1 cut(s)	54
MspA1I	CMGCKG	1 cut(s)	495
MspI	CCGG	4 cut(s)	171, 203, 220, 404
MspR9I	CCNGG	1 cut(s)	203
NciI	CCSGG	1 cut(s)	203
NdeII	GATC	1 cut(s)	679
NlaIII	CATG	3 cut(s)	366, 598, 619
NlaIV	GGNNCC	2 cut(s)	261, 627
NmeAIII	GCCGAG	1 cut(s)	469
NspI	RCATGY	2 cut(s)	366, 598
PaeI	GCATGC	1 cut(s)	366
PciSI	GCTCTTC	1 cut(s)	593
PcsI	WCGNNNNNNNCGW	2 cut(s)	155, 567
PfeI	GAWTC	2 cut(s)	47, 380
PflMI	CCANNNNNTGG	1 cut(s)	282
PkrI	GCNGC	8 cut(s)	316, 337, 439, 442, 451, 482, 494, 497
PleI	GAGTC	4 cut(s)	82, 100, 187, 703
PpsI	GAGTC	4 cut(s)	82, 100, 187, 703
PspN4I	GGNNCC	2 cut(s)	261, 627
PspPI	GGNCC	3 cut(s)	343, 435, 626
PsrI	GAACNNNNNNTAC	1 cut(s)	28
PvuII	CAGCTG	1 cut(s)	495
RsaI	GTAC	1 cut(s)	296
RsaNI	GTAC	1 cut(s)	295
SapI	GCTCTTC	1 cut(s)	593
SatI	GCNGC	8 cut(s)	315, 336, 438, 441, 450, 481, 493, 496
Sau3AI	GATC	1 cut(s)	679
Sau96I	GGNCC	3 cut(s)	343, 435, 626
SchI	GAGTC	4 cut(s)	83, 100, 187, 704
ScrFI	CCNGG	1 cut(s)	203
SinI	GGWCC	1 cut(s)	626
SmlI	CTYRAG	2 cut(s)	305, 487
SmoI	CTYRAG	2 cut(s)	305, 487
SphI	GCATGC	1 cut(s)	366
Sse9I	AATT	5 cut(s)	10, 279, 370, 473, 700
SsiI	CCGC	8 cut(s)	134, 315, 335, 438, 441, 480, 620, 641
SspMI	CTAG	2 cut(s)	143, 612
StyD4I	CCNGG	1 cut(s)	201
TaaI	ACNGT	1 cut(s)	662
TaiI	ACGT	1 cut(s)	296
TaqI	TCGA	5 cut(s)	45, 149, 423, 463, 591
TasI	AATT	5 cut(s)	10, 279, 370, 473, 700
TauI	GCSGC	5 cut(s)	317, 338, 440, 443, 483
TfiI	GAWTC	2 cut(s)	47, 380
TscAI	CASTG	1 cut(s)	636
TseI	GCWGC	3 cut(s)	449, 492, 495
TspDTI	ATGAA	3 cut(s)	17, 591, 680
TspRI	CASTG	1 cut(s)	636
Van91I	CCANNNNNTGG	1 cut(s)	282
VpaK11BI	GGWCC	1 cut(s)	626
XapI	RAATTY	3 cut(s)	279, 473, 700
XceI	RCATGY	2 cut(s)	366, 598
XmiI	GTMKAC	1 cut(s)	207
XspI	CTAG	2 cut(s)	143, 612

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.