Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000958

Physical Location & Seq

Genomic Coordinates Reverse (-)

23367394 .. 23368416

Gene Structure 1023 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G63030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGAAAACGACGATATCACCGTGGCGGAGATGAAGCCAAAGAAGCGTGCTGGACGGAGGATTTTCAAGGAGACACGTCACCCAATCTACAGAGGCGTGCGGCGTAGGGACGGCGACAAATGGGTATGCGAAGTCCGTGAACCGATTCATCAGCGTCGAGTCTGGCTCGGAACTTATCCGACGGCAGATATGGCCGCACGTGCTCACGACGTGGCGGTTCTTGCTCTGCGCGGGAGATCCGCGTGTTTGAATTTCTCCGATTCTGCTTGGAGGTTGCCGGTGCCGGCATCCACTGATCCGGACACGATCAGGCGCACGGCGGCCGAAGCAGCGGAGATGTTCAGGCCGCCGGAGTTTAGTACAGGAATTACGGTTTTACCCTCAGCCAGTGAGTTTGACACGTCGGATGAAGGAGTCGCTGGAATGATGATGAGGCTCGCGGAGGAGCCGTTGATGTCGCCGCCAAGATCGTACATTGATATGAATACGAGTGTGTACGTGGACGAAGAAATGTGTTACGAAGATTTGTCACTTTGGAGTTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0001558 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009889 GO:0009987 GO:0010035 GO:0010371 GO:0010468 GO:0010556 GO:0010565 GO:0010817 GO:0016143 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0019748 GO:0019757 GO:0019760 GO:0022603 GO:0022604 GO:0031323 GO:0031326 GO:0032350 GO:0040008 GO:0040034 GO:0042221 GO:0043436 GO:0043455 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0046885 GO:0046890 GO:0048506 GO:0048509 GO:0048510 GO:0048638 GO:0050789 GO:0050793 GO:0050794 GO:0050826 GO:0050896 GO:0051128 GO:0051171 GO:0051252 GO:0051510 GO:0060255 GO:0062012 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

181

Amino Acids

20.65

Weight (kDa)

5.49

Isoelectric Point (pI)

54.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	29 - 78	1.6e-12	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000958)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12610 AT1G63030 AT1G63030
fragaria_vesca	FvH4_5g01440
malus_domestica	MD04G1067800.v1.1 MD04G1067900.v1.1 MD06G1072300.v1.1
prunus_persica	Prupe.5G089900_v2.0.a1 Prupe.5G090000_v2.0.a1 Prupe.5G090100_v2.0.a1 Prupe.5G090200_v2.0.a1 Prupe.5G090500_v2.0.a1
pyrus_communis	pycom04g06140 pycom06g07110 pycom06g07120
rosa_chinensis	RchiOBHm_Chr7g0199251 RchiOBHm_Chr7g0199301 RchiOBHm_Chr7g0199331 RchiOBHm_Chr7g0199351 RchiOBHm_Chr7g0199381
rosa_laevigata	RLG00000002739 RLG00000002740 RLG00000003796 RLG00000003799 RLG00000003801
rosa_multiflora	Rmu_co8046292.1_g000001 Rmu_co8280319.1_g000001 Rmu_sc0000855.1_g000009 Rmu_sc0000950.1_g000001 Rmu_sc0000950.1_g000005 Rmu_sc0007820.1_g000002 Rmu_sc0010720.1_g000001 Rmu_sc0039534.1_g000001
rosa_roxburghii	Rroxscaffold_3G00256750 Rroxscaffold_3G00256770 Rroxscaffold_3G00256870 Rroxscaffold_5G00359530
rosa_rugosa	Rorug07G0053500 Rorug07G0053500 Rorug07G0053500 Rorug07G0053800
rosa_samantha	Rh4BG264100 Rh7AG177700 Rh7AG177900 Rh7AG178000 Rh7AG178100 Rh7AG178600 Rh7BG181300 Rh7BG181400 Rh7BG181600 Rh7BG181900 Rh7BG182100 Rh7CG186800 Rh7CG187000 Rh7CG187200 Rh7CG187400 Rh7DG180800 Rh7DG181700
rosa_wichuraiana	Rw7G015620 Rw7G015630 Rw7G015650 Rw7G015670 Rw7G015680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	280
AccII	CGCG	3 cut(s)	231, 242, 440
AccIII	TCCGGA	1 cut(s)	298
AclWI	GGATC	2 cut(s)	231, 290
AcoI	YGGCCR	2 cut(s)	192, 321
AcsI	RAATTY	1 cut(s)	250
AcvI	CACGTG	1 cut(s)	200
AdeI	CACNNNGTG	1 cut(s)	211
AfaI	GTAC	3 cut(s)	361, 473, 497
AflIII	ACRYGT	2 cut(s)	74, 399
AgsI	TTSAA	2 cut(s)	67, 250
AjiI	CACGTC	3 cut(s)	77, 211, 402
Alw21I	GWGCWC	1 cut(s)	205
Alw26I	GTCTC	1 cut(s)	65
AlwI	GGATC	2 cut(s)	231, 290
Aor13HI	TCCGGA	1 cut(s)	298
AoxI	GGCC	3 cut(s)	192, 321, 344
ApeKI	GCWGC	1 cut(s)	329
ApoI	RAATTY	1 cut(s)	250
Asp700I	GAANNNNTTC	1 cut(s)	144
AspLEI	GCGC	2 cut(s)	231, 315
AsuHPI	GGTGA	2 cut(s)	10, 71
BanI	GGYRCC	1 cut(s)	280
BbrPI	CACGTG	1 cut(s)	200
Bbv12I	GWGCWC	1 cut(s)	205
BbvCI	CCTCAGC	1 cut(s)	382
BbvI	GCAGC	1 cut(s)	341
BceAI	ACGGC	4 cut(s)	127, 198, 333, 433
BcoDI	GTCTC	1 cut(s)	65
BfmI	CTRYAG	1 cut(s)	88
BisI	GCNGC	6 cut(s)	101, 195, 321, 330, 347, 461
BlsI	GCNGC	6 cut(s)	102, 196, 322, 331, 348, 462
BmgBI	CACGTC	3 cut(s)	77, 211, 402
BmiI	GGNNCC	2 cut(s)	282, 447
BmsI	GCATC	1 cut(s)	296
BplI	GAGNNNNNCTC	2 cut(s)	150, 182
Bpu10I	CCTNAGC	1 cut(s)	382
BsaAI	YACGTR	2 cut(s)	200, 499
BsaJI	CCNNGG	1 cut(s)	21
BsaWI	WCCGGW	1 cut(s)	298
BsaXI	ACNNNNNCTCC	2 cut(s)	434, 464
Bse118I	RCCGGY	2 cut(s)	277, 283
Bse1I	ACTGG	1 cut(s)	387
BseAI	TCCGGA	1 cut(s)	298
BseDI	CCNNGG	1 cut(s)	21
BseGI	GGATG	2 cut(s)	287, 412
BseMII	CTCAG	1 cut(s)	396
BseNI	ACTGG	1 cut(s)	387
BseRI	GAGGAG	1 cut(s)	458
BseX3I	CGGCCG	1 cut(s)	321
BseXI	GCAGC	1 cut(s)	341
Bsh1236I	CGCG	3 cut(s)	231, 242, 440
Bsh1285I	CGRYCG	1 cut(s)	324
BshFI	GGCC	3 cut(s)	194, 323, 346
BshNI	GGYRCC	1 cut(s)	280
BsiEI	CGRYCG	1 cut(s)	324
BsiHKAI	GWGCWC	1 cut(s)	205
BsiSI	CCGG	4 cut(s)	278, 284, 299, 350
BslFI	GGGAC	1 cut(s)	122
BsmAI	GTCTC	1 cut(s)	65
BsmFI	GGGAC	1 cut(s)	122
BsnI	GGCC	3 cut(s)	194, 323, 346
Bsp1286I	GDGCHC	1 cut(s)	205
Bsp13I	TCCGGA	1 cut(s)	298
Bsp143I	GATC	4 cut(s)	236, 295, 306, 467
BspANI	GGCC	3 cut(s)	194, 323, 346
BspCNI	CTCAG	1 cut(s)	395
BspEI	TCCGGA	1 cut(s)	298
BspFNI	CGCG	3 cut(s)	231, 242, 440
BspLI	GGNNCC	2 cut(s)	282, 447
BspPI	GGATC	2 cut(s)	231, 290
BspT107I	GGYRCC	1 cut(s)	280
BsrFI	RCCGGY	2 cut(s)	277, 283
BsrI	ACTGG	1 cut(s)	387
BssAI	RCCGGY	2 cut(s)	277, 283
BssECI	CCNNGG	1 cut(s)	21
BssMI	GATC	4 cut(s)	236, 295, 306, 467
Bst4CI	ACNGT	2 cut(s)	22, 373
BstBAI	YACGTR	2 cut(s)	200, 499
BstC8I	GCNNGC	4 cut(s)	48, 98, 285, 438
BstDEI	CTNAG	1 cut(s)	382
BstDSI	CCRYGG	1 cut(s)	21
BstF5I	GGATG	2 cut(s)	287, 412
BstFNI	CGCG	3 cut(s)	231, 242, 440
BstHHI	GCGC	2 cut(s)	231, 315
BstKTI	GATC	4 cut(s)	239, 298, 309, 470
BstMAI	GTCTC	1 cut(s)	65
BstMBI	GATC	4 cut(s)	236, 295, 306, 467
BstMCI	CGRYCG	1 cut(s)	324
BstMWI	GCNNNNNNNGC	6 cut(s)	43, 191, 200, 221, 326, 329
BstSFI	CTRYAG	1 cut(s)	88
BstUI	CGCG	3 cut(s)	231, 242, 440
BstV1I	GCAGC	1 cut(s)	341
BstX2I	RGATCY	1 cut(s)	236
BstYI	RGATCY	1 cut(s)	236
BstZI	CGGCCG	1 cut(s)	321
BsuRI	GGCC	3 cut(s)	194, 323, 346
BtgI	CCRYGG	1 cut(s)	21
BtrI	CACGTC	3 cut(s)	77, 211, 402
BtsCI	GGATG	2 cut(s)	287, 412
BtsIMutI	CAGTG	2 cut(s)	291, 394
Cac8I	GCNNGC	4 cut(s)	48, 98, 285, 438
CfoI	GCGC	2 cut(s)	231, 315
Cfr10I	RCCGGY	2 cut(s)	277, 283
CseI	GACGC	1 cut(s)	143
Csp6I	GTAC	3 cut(s)	360, 472, 496
CviJI	RGCY	8 cut(s)	37, 166, 194, 323, 346, 386, 436, 448
CviKI_1	RGCY	8 cut(s)	37, 166, 194, 323, 346, 386, 436, 448
CviQI	GTAC	3 cut(s)	360, 472, 496
DdeI	CTNAG	1 cut(s)	382
DpnI	GATC	4 cut(s)	238, 297, 308, 469
DpnII	GATC	4 cut(s)	236, 295, 306, 467
DraIII	CACNNNGTG	1 cut(s)	211
EaeI	YGGCCR	2 cut(s)	192, 321
EagI	CGGCCG	1 cut(s)	321
EciI	GGCGGA	1 cut(s)	41
EclXI	CGGCCG	1 cut(s)	321
Eco32I	GATATC	1 cut(s)	16
Eco52I	CGGCCG	1 cut(s)	321
Eco72I	CACGTG	1 cut(s)	200
EcoRV	GATATC	1 cut(s)	16
FaiI	YATR	3 cut(s)	127, 191, 482
FaqI	GGGAC	1 cut(s)	122
FauI	CCCGC	1 cut(s)	224
Fnu4HI	GCNGC	6 cut(s)	101, 195, 321, 330, 347, 461
FokI	GGATG	2 cut(s)	274, 419
Fsp4HI	GCNGC	6 cut(s)	101, 195, 321, 330, 347, 461
GlaI	GCGC	2 cut(s)	230, 314
GluI	GCNGC	6 cut(s)	101, 195, 321, 330, 347, 461
HaeIII	GGCC	3 cut(s)	194, 323, 346
HapII	CCGG	4 cut(s)	278, 284, 299, 350
HgaI	GACGC	1 cut(s)	143
HhaI	GCGC	2 cut(s)	231, 315
Hin6I	GCGC	2 cut(s)	229, 313
HinP1I	GCGC	2 cut(s)	229, 313
HinfI	GANTC	4 cut(s)	145, 159, 260, 414
HpaII	CCGG	4 cut(s)	278, 284, 299, 350
HphI	GGTGA	2 cut(s)	10, 71
Hpy166II	GTNNAC	3 cut(s)	140, 496, 502
Hpy188I	TCNGA	4 cut(s)	170, 180, 259, 406
Hpy188III	TCNNGA	2 cut(s)	206, 299
Hpy8I	GTNNAC	3 cut(s)	140, 496, 502
Hpy99I	CGWCG	5 cut(s)	14, 159, 184, 212, 406
HpyAV	CCTTC	1 cut(s)	404
HpyCH4III	ACNGT	2 cut(s)	22, 373
HpyCH4IV	ACGT	5 cut(s)	76, 199, 210, 401, 498
HpyF10VI	GCNNNNNNNGC	6 cut(s)	43, 191, 200, 221, 326, 329
HpyF3I	CTNAG	1 cut(s)	382
HpySE526I	ACGT	5 cut(s)	76, 199, 210, 401, 498
HspAI	GCGC	2 cut(s)	229, 313
Kpn2I	TCCGGA	1 cut(s)	298
KroI	GCCGGC	1 cut(s)	283
KroNI	GCCGGC	1 cut(s)	285
Kzo9I	GATC	4 cut(s)	236, 295, 306, 467
LmnI	GCTCC	1 cut(s)	445
Lsp1109I	GCAGC	1 cut(s)	341
LweI	GCATC	1 cut(s)	296
MaeII	ACGT	5 cut(s)	76, 199, 210, 401, 498
MaeIII	GTNAC	4 cut(s)	77, 515, 528, 539
MalI	GATC	4 cut(s)	238, 297, 308, 469
MboI	GATC	4 cut(s)	236, 295, 306, 467
MboII	GAAGA	2 cut(s)	518, 533
MflI	RGATCY	1 cut(s)	236
MhlI	GDGCHC	1 cut(s)	205
MluCI	AATT	2 cut(s)	250, 366
MlyI	GAGTC	2 cut(s)	168, 423
MmeI	TCCRAC	2 cut(s)	203, 384
MnlI	CCTC	6 cut(s)	51, 86, 264, 391, 426, 436
MroI	TCCGGA	1 cut(s)	298
MroNI	GCCGGC	1 cut(s)	283
MroXI	GAANNNNTTC	1 cut(s)	144
MslI	CAYNNNNRTG	1 cut(s)	479
MspA1I	CMGCKG	1 cut(s)	332
MspI	CCGG	4 cut(s)	278, 284, 299, 350
MvnI	CGCG	3 cut(s)	231, 242, 440
MwoI	GCNNNNNNNGC	6 cut(s)	43, 191, 200, 221, 326, 329
NaeI	GCCGGC	1 cut(s)	285
NdeII	GATC	4 cut(s)	236, 295, 306, 467
NgoMIV	GCCGGC	1 cut(s)	283
NlaIV	GGNNCC	2 cut(s)	282, 447
NmuCI	GTSAC	2 cut(s)	77, 528
PcsI	WCGNNNNNNNCGW	1 cut(s)	18
PdiI	GCCGGC	1 cut(s)	285
PdmI	GAANNNNTTC	1 cut(s)	144
PfeI	GAWTC	2 cut(s)	145, 260
PkrI	GCNGC	6 cut(s)	102, 196, 322, 331, 348, 462
PleI	GAGTC	2 cut(s)	167, 422
PmaCI	CACGTG	1 cut(s)	200
PmlI	CACGTG	1 cut(s)	200
PpsI	GAGTC	2 cut(s)	167, 422
Ppu21I	YACGTR	2 cut(s)	200, 499
PspCI	CACGTG	1 cut(s)	200
PspN4I	GGNNCC	2 cut(s)	282, 447
PsuI	RGATCY	1 cut(s)	236
RsaI	GTAC	3 cut(s)	361, 473, 497
RsaNI	GTAC	3 cut(s)	360, 472, 496
RseI	CAYNNNNRTG	1 cut(s)	479
SatI	GCNGC	6 cut(s)	101, 195, 321, 330, 347, 461
Sau3AI	GATC	4 cut(s)	236, 295, 306, 467
SchI	GAGTC	2 cut(s)	168, 423
SduI	GDGCHC	1 cut(s)	205
SetI	ASST	6 cut(s)	79, 202, 213, 275, 404, 501
SfaNI	GCATC	1 cut(s)	296
SfcI	CTRYAG	1 cut(s)	88
SmiMI	CAYNNNNRTG	1 cut(s)	479
Sse9I	AATT	2 cut(s)	250, 366
TaaI	ACNGT	2 cut(s)	22, 373
TaiI	ACGT	5 cut(s)	79, 202, 213, 404, 501
TaqI	TCGA	1 cut(s)	157
TasI	AATT	2 cut(s)	250, 366
TatI	WGTACW	1 cut(s)	359
TauI	GCSGC	5 cut(s)	103, 197, 323, 349, 463
TfiI	GAWTC	2 cut(s)	145, 260
TscAI	CASTG	2 cut(s)	298, 394
TseFI	GTSAC	2 cut(s)	77, 528
TseI	GCWGC	1 cut(s)	329
Tsp45I	GTSAC	2 cut(s)	77, 528
TspDTI	ATGAA	4 cut(s)	47, 137, 423, 497
TspGWI	ACGGA	2 cut(s)	70, 125
TspRI	CASTG	2 cut(s)	298, 394
XapI	RAATTY	1 cut(s)	250
XmnI	GAANNNNTTC	1 cut(s)	144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.