FvH4_5g01440

DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
899521 .. 900291
771 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g01440.t1

Sequence Viewer

Length: 771 bp
ATGAATAGCTCCACTTCCCAGCAGCAGCTCTCCGACTCCAACCTGCAGCAGCAGCCCCTCGACTCCTCCTCCTCCATCGACAAGCCGGAATCCTCCTCCTTCTCCGACGCCAGCGTCACCAACCGCCGCTCAGCTCACTCCGACGAGGAAGTCATTTTGGCTTCCAGCCGGCCCAAGAAGCGCGCCGGGAGGCGAGTGTTCAAGGAGACTCGCCACCCGGTGTACCGCGGCGTGCGGCGGAGGAACAACAACAAATGGGTGTGCGAGGTGAGGGAGCCAAACAAGAAGACCAGGATCTGGCTCGGCACGTACCCGACGGCCGAGATGGCCGCTCGGGCTCATGACGTGGCGGCATTGGCGCTTCGCGGGAAGCAAGCGTGCCTGAATTTCGCGGACTCGGCGTGGCGCTTGCCGGTCCCGGCTTCTAAGGACCAGCTCGACATTCGCCGAGCCGCCGCCGAGGCTGCTGAGACGTTCCGGCCTCAGGAGTTCGGCGGCGTCTCGAGCAGCTGCGAGGACGATTACTATCAGGAAAGTAATAATGAAGCGGATCAGGAAGTCGCCAAGATATCATTAGACTCGGCGGAGAAGAAGAACGAAGGGTTCTACGAGGACGAAGAGGCCGTCTTCGACATGCCGAGGTTGCTGACTAGCATGGCGGAGGGTTTACTGCTATCTCCACCTCGTCATTACATGGACAGCATCAACTGGGGCGACGCCGATGACGTGGAAAGCGAGCCGAATTTCAGCCTCTGGAGCTACTCCGTATGA

Protein Analysis

257

Amino Acids

28.82

Weight (kDa)

5.2

Isoelectric Point (pI)

72.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 73 - 123 6.3e-16 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 113, 149
Acc36I ACCTGC 1 cut(s) 51
AccB7I CCANNNNNTGG 1 cut(s) 297
AccBSI CCGCTC 2 cut(s) 129, 332
AccII CGCG 4 cut(s) 183, 228, 366, 392
AclWI GGATC 2 cut(s) 302, 558
AcoI YGGCCR 2 cut(s) 318, 327
AcsI RAATTY 2 cut(s) 385, 742
AcyI GRCGYC 3 cut(s) 108, 498, 717
AdeI CACNNNGTG 1 cut(s) 220
AfaI GTAC 2 cut(s) 224, 311
AfiI CCNNNNNNNGG 2 cut(s) 297, 484
AgsI TTSAA 1 cut(s) 202
AjiI CACGTC 2 cut(s) 346, 727
AjnI CCWGG 1 cut(s) 290
AluBI AGCT 6 cut(s) 9, 28, 134, 436, 510, 759
AluI AGCT 6 cut(s) 9, 28, 134, 436, 510, 759
Alw26I GTCTC 3 cut(s) 200, 464, 505
AlwI GGATC 2 cut(s) 302, 558
AlwNI CAGNNNCTG 2 cut(s) 297, 753
Ama87I CYCGRG 2 cut(s) 333, 502
AoxI GGCC 5 cut(s) 170, 318, 327, 479, 621
ApeKI GCWGC 8 cut(s) 22, 25, 46, 49, 52, 464, 507, 510
ApoI RAATTY 2 cut(s) 385, 742
ArsI GACNNNNNNTTYG 2 cut(s) 609, 641
AspLEI GCGC 4 cut(s) 183, 185, 361, 408
AspS9I GGNCC 3 cut(s) 171, 415, 430
AsuC2I CCSGG 3 cut(s) 187, 218, 419
AsuHPI GGTGA 2 cut(s) 109, 280
AvaI CYCGRG 2 cut(s) 333, 502
AvaII GGWCC 2 cut(s) 415, 430
AxyI CCTNAGG 1 cut(s) 483
BanII GRGCYC 1 cut(s) 340
BbsI GAAGAC 2 cut(s) 293, 619
BbvI GCAGC 8 cut(s) 34, 37, 58, 61, 64, 451, 497, 519
BccI CCATC 2 cut(s) 83, 319
BceAI ACGGC 2 cut(s) 333, 608
BciT130I CCWGG 1 cut(s) 292
BcnI CCSGG 3 cut(s) 187, 218, 419
BcoDI GTCTC 3 cut(s) 200, 464, 505
BfaI CTAG 1 cut(s) 651
BfmI CTRYAG 1 cut(s) 44
BfoI RGCGCY 2 cut(s) 362, 409
BfuAI ACCTGC 1 cut(s) 51
BglI GCCNNNNNGGC 3 cut(s) 326, 335, 461
BlpI GCTNAGC 1 cut(s) 130
Bme1390I CCNGG 4 cut(s) 187, 218, 292, 419
Bme18I GGWCC 2 cut(s) 415, 430
BmeT110I CYCGRG 2 cut(s) 333, 502
BmgBI CACGTC 2 cut(s) 346, 727
BmgT120I GGNCC 3 cut(s) 171, 415, 430
BmiI GGNNCC 2 cut(s) 276, 417
BmrFI CCNGG 4 cut(s) 187, 218, 292, 419
BmrI ACTGGG 1 cut(s) 718
BmsI GCATC 1 cut(s) 711
BmuI ACTGGG 1 cut(s) 718
BpiI GAAGAC 2 cut(s) 293, 619
Bpu1102I GCTNAGC 1 cut(s) 130
BpuMI CCSGG 3 cut(s) 187, 218, 419
BsaAI YACGTR 1 cut(s) 309
BsaBI GATNNNNATC 1 cut(s) 525
BsaHI GRCGYC 3 cut(s) 108, 498, 717
BsaJI CCNNGG 3 cut(s) 226, 459, 638
BsaXI ACNNNNNCTCC 2 cut(s) 53, 83
Bsc4I CCNNNNNNNGG 2 cut(s) 297, 484
Bse118I RCCGGY 2 cut(s) 168, 412
Bse1I ACTGG 1 cut(s) 713
Bse21I CCTNAGG 1 cut(s) 483
Bse8I GATNNNNATC 1 cut(s) 525
BseBI CCWGG 1 cut(s) 292
BseDI CCNNGG 3 cut(s) 226, 459, 638
BseJI GATNNNNATC 1 cut(s) 525
BseLI CCNNNNNNNGG 2 cut(s) 297, 484
BseMII CTCAG 3 cut(s) 144, 459, 497
BseNI ACTGG 1 cut(s) 713
BsePI GCGCGC 1 cut(s) 181
BseRI GAGGAG 4 cut(s) 55, 58, 61, 85
BseX3I CGGCCG 1 cut(s) 318
BseXI GCAGC 8 cut(s) 34, 37, 58, 61, 64, 451, 497, 519
BseYI CCCAGC 1 cut(s) 18
Bsh1236I CGCG 4 cut(s) 183, 228, 366, 392
Bsh1285I CGRYCG 1 cut(s) 321
BshFI GGCC 5 cut(s) 172, 320, 329, 481, 623
BsiEI CGRYCG 1 cut(s) 321
BsiHKCI CYCGRG 2 cut(s) 333, 502
BsiSI CCGG 7 cut(s) 86, 169, 186, 218, 413, 419, 478
BslFI GGGAC 1 cut(s) 401
BslI CCNNNNNNNGG 2 cut(s) 297, 484
BsmAI GTCTC 3 cut(s) 200, 464, 505
BsmBI CGTCTC 2 cut(s) 464, 505
BsmFI GGGAC 1 cut(s) 401
BsnI GGCC 5 cut(s) 172, 320, 329, 481, 623
BsoBI CYCGRG 2 cut(s) 333, 502
Bsp1286I GDGCHC 1 cut(s) 340
Bsp143I GATC 2 cut(s) 294, 550
Bsp1720I GCTNAGC 1 cut(s) 130
BspANI GGCC 5 cut(s) 172, 320, 329, 481, 623
BspCNI CTCAG 3 cut(s) 143, 460, 496
BspFNI CGCG 4 cut(s) 183, 228, 366, 392
BspHI TCATGA 1 cut(s) 340
BspLI GGNNCC 2 cut(s) 276, 417
BspMAI CTGCAG 1 cut(s) 48
BspMI ACCTGC 1 cut(s) 51
BspPI GGATC 2 cut(s) 302, 558
BsrBI CCGCTC 2 cut(s) 129, 332
BsrFI RCCGGY 2 cut(s) 168, 412
BsrI ACTGG 1 cut(s) 713
BssAI RCCGGY 2 cut(s) 168, 412
BssECI CCNNGG 3 cut(s) 226, 459, 638
BssHII GCGCGC 1 cut(s) 181
BssMI GATC 2 cut(s) 294, 550
BssNI GRCGYC 3 cut(s) 108, 498, 717
Bst2UI CCWGG 1 cut(s) 292
Bst6I CTCTTC 1 cut(s) 612
BstACI GRCGYC 3 cut(s) 108, 498, 717
BstBAI YACGTR 1 cut(s) 309
BstC8I GCNNGC 8 cut(s) 112, 170, 183, 233, 375, 379, 410, 737
BstDEI CTNAG 4 cut(s) 130, 426, 468, 483
BstDSI CCRYGG 1 cut(s) 226
BstFNI CGCG 4 cut(s) 183, 228, 366, 392
BstH2I RGCGCY 2 cut(s) 362, 409
BstHHI GCGC 4 cut(s) 183, 185, 361, 408
BstKTI GATC 2 cut(s) 297, 553
BstMAI GTCTC 3 cut(s) 200, 464, 505
BstMBI GATC 2 cut(s) 294, 550
BstMCI CGRYCG 1 cut(s) 321
BstNI CCWGG 1 cut(s) 292
BstNSI RCATGY 1 cut(s) 637
BstSCI CCNGG 4 cut(s) 185, 216, 290, 417
BstSFI CTRYAG 1 cut(s) 44
BstUI CGCG 4 cut(s) 183, 228, 366, 392
BstV1I GCAGC 8 cut(s) 34, 37, 58, 61, 64, 451, 497, 519
BstV2I GAAGAC 2 cut(s) 293, 619
BstX2I RGATCY 1 cut(s) 294
BstYI RGATCY 1 cut(s) 294
BstZI CGGCCG 1 cut(s) 318
Bsu36I CCTNAGG 1 cut(s) 483
BsuRI GGCC 5 cut(s) 172, 320, 329, 481, 623
BtgI CCRYGG 1 cut(s) 226
BtrI CACGTC 2 cut(s) 346, 727
BveI ACCTGC 1 cut(s) 51
Cac8I GCNNGC 8 cut(s) 112, 170, 183, 233, 375, 379, 410, 737
CaiI CAGNNNCTG 2 cut(s) 297, 753
CciI TCATGA 1 cut(s) 340
CfoI GCGC 4 cut(s) 183, 185, 361, 408
Cfr10I RCCGGY 2 cut(s) 168, 412
Cfr13I GGNCC 3 cut(s) 171, 415, 430
Cfr42I CCGCGG 1 cut(s) 229
CseI GACGC 4 cut(s) 103, 116, 487, 725
Csp6I GTAC 2 cut(s) 223, 310
CviAII CATG 4 cut(s) 341, 634, 655, 694
CviQI GTAC 2 cut(s) 223, 310
DdeI CTNAG 4 cut(s) 130, 426, 468, 483
DpnI GATC 2 cut(s) 296, 552
DpnII GATC 2 cut(s) 294, 550
DraIII CACNNNGTG 1 cut(s) 220
DrdI GACNNNNNNGTC 2 cut(s) 113, 149
DseDI GACNNNNNNGTC 2 cut(s) 113, 149
EaeI YGGCCR 2 cut(s) 318, 327
EagI CGGCCG 1 cut(s) 318
Eam1104I CTCTTC 1 cut(s) 612
EarI CTCTTC 1 cut(s) 612
EciI GGCGGA 3 cut(s) 253, 599, 674
EclXI CGGCCG 1 cut(s) 318
Eco24I GRGCYC 1 cut(s) 340
Eco32I GATATC 1 cut(s) 570
Eco47I GGWCC 2 cut(s) 415, 430
Eco52I CGGCCG 1 cut(s) 318
Eco81I CCTNAGG 1 cut(s) 483
Eco88I CYCGRG 2 cut(s) 333, 502
EcoRII CCWGG 1 cut(s) 290
EcoRV GATATC 1 cut(s) 570
EcoT38I GRGCYC 1 cut(s) 340
Esp3I CGTCTC 2 cut(s) 464, 505
FaeI CATG 4 cut(s) 344, 637, 658, 697
FaiI YATR 5 cut(s) 342, 635, 656, 695, 769
FaqI GGGAC 1 cut(s) 401
FatI CATG 4 cut(s) 340, 633, 654, 693
FauI CCCGC 1 cut(s) 359
FriOI GRGCYC 1 cut(s) 340
FspBI CTAG 1 cut(s) 651
GlaI GCGC 4 cut(s) 182, 184, 360, 407
GsaI CCCAGC 1 cut(s) 22
HaeII RGCGCY 2 cut(s) 362, 409
HaeIII GGCC 5 cut(s) 172, 320, 329, 481, 623
HapII CCGG 7 cut(s) 86, 169, 186, 218, 413, 419, 478
HgaI GACGC 4 cut(s) 103, 116, 487, 725
HhaI GCGC 4 cut(s) 183, 185, 361, 408
Hin1I GRCGYC 3 cut(s) 108, 498, 717
Hin1II CATG 4 cut(s) 344, 637, 658, 697
Hin6I GCGC 4 cut(s) 181, 183, 359, 406
HinP1I GCGC 4 cut(s) 181, 183, 359, 406
HinfI GANTC 6 cut(s) 35, 62, 89, 208, 395, 578
HpaII CCGG 7 cut(s) 86, 169, 186, 218, 413, 419, 478
HphI GGTGA 2 cut(s) 109, 280
Hpy166II GTNNAC 2 cut(s) 223, 668
Hpy188I TCNGA 3 cut(s) 34, 106, 142
Hpy188III TCNNGA 6 cut(s) 341, 485, 502, 530, 554, 754
Hpy8I GTNNAC 2 cut(s) 223, 668
Hpy99I CGWCG 4 cut(s) 110, 146, 319, 719
HpyAV CCTTC 2 cut(s) 109, 593
HpyCH4IV ACGT 4 cut(s) 308, 345, 473, 726
HpyCH4V TGCA 1 cut(s) 46
HpyF3I CTNAG 4 cut(s) 130, 426, 468, 483
HpySE526I ACGT 4 cut(s) 308, 345, 473, 726
Hsp92I GRCGYC 3 cut(s) 108, 498, 717
Hsp92II CATG 4 cut(s) 344, 637, 658, 697
HspAI GCGC 4 cut(s) 181, 183, 359, 406
KroI GCCGGC 1 cut(s) 168
KroNI GCCGGC 1 cut(s) 170
KspI CCGCGG 1 cut(s) 229
Kzo9I GATC 2 cut(s) 294, 550
LmnI GCTCC 3 cut(s) 14, 274, 756
Lsp1109I GCAGC 8 cut(s) 34, 37, 58, 61, 64, 451, 497, 519
LweI GCATC 1 cut(s) 711
MaeI CTAG 1 cut(s) 651
MaeII ACGT 4 cut(s) 308, 345, 473, 726
MaeIII GTNAC 1 cut(s) 115
MalI GATC 2 cut(s) 296, 552
MbiI CCGCTC 2 cut(s) 129, 332
MboI GATC 2 cut(s) 294, 550
MboII GAAGA 5 cut(s) 298, 601, 604, 619, 629
MflI RGATCY 1 cut(s) 294
MhlI GDGCHC 1 cut(s) 340
MluCI AATT 2 cut(s) 385, 742
MlyI GAGTC 5 cut(s) 29, 56, 202, 389, 572
MmeI TCCRAC 4 cut(s) 57, 63, 129, 165
MroNI GCCGGC 1 cut(s) 168
MspA1I CMGCKG 2 cut(s) 228, 510
MspI CCGG 7 cut(s) 86, 169, 186, 218, 413, 419, 478
MspR9I CCNGG 4 cut(s) 187, 218, 292, 419
MvaI CCWGG 1 cut(s) 292
MvnI CGCG 4 cut(s) 183, 228, 366, 392
NaeI GCCGGC 1 cut(s) 170
NciI CCSGG 3 cut(s) 187, 218, 419
NdeII GATC 2 cut(s) 294, 550
NgoMIV GCCGGC 1 cut(s) 168
NlaIII CATG 4 cut(s) 344, 637, 658, 697
NlaIV GGNNCC 2 cut(s) 276, 417
NmeAIII GCCGAG 7 cut(s) 282, 346, 377, 473, 484, 560, 663
NmuCI GTSAC 1 cut(s) 115
NspI RCATGY 1 cut(s) 637
PaeR7I CTCGAG 1 cut(s) 502
PagI TCATGA 1 cut(s) 340
PauI GCGCGC 1 cut(s) 181
PcsI WCGNNNNNNNCGW 3 cut(s) 621, 723, 732
PdiI GCCGGC 1 cut(s) 170
PfeI GAWTC 1 cut(s) 89
PflMI CCANNNNNTGG 1 cut(s) 297
PleI GAGTC 5 cut(s) 29, 56, 202, 389, 572
PpsI GAGTC 5 cut(s) 29, 56, 202, 389, 572
Ppu21I YACGTR 1 cut(s) 309
Psp6I CCWGG 1 cut(s) 290
PspFI CCCAGC 1 cut(s) 18
PspGI CCWGG 1 cut(s) 290
PspN4I GGNNCC 2 cut(s) 276, 417
PspPI GGNCC 3 cut(s) 171, 415, 430
PstI CTGCAG 1 cut(s) 48
PstNI CAGNNNCTG 2 cut(s) 297, 753
PsuI RGATCY 1 cut(s) 294
PteI GCGCGC 1 cut(s) 181
PvuII CAGCTG 1 cut(s) 510
RsaI GTAC 2 cut(s) 224, 311
RsaNI GTAC 2 cut(s) 223, 310
SacII CCGCGG 1 cut(s) 229
Sau3AI GATC 2 cut(s) 294, 550
Sau96I GGNCC 3 cut(s) 171, 415, 430
SchI GAGTC 5 cut(s) 29, 56, 202, 389, 572
ScrFI CCNGG 4 cut(s) 187, 218, 292, 419
SduI GDGCHC 1 cut(s) 340
SfaNI GCATC 1 cut(s) 711
SfcI CTRYAG 1 cut(s) 44
SfiI GGCCNNNNNGGCC 1 cut(s) 326
Sfr274I CTCGAG 1 cut(s) 502
Sfr303I CCGCGG 1 cut(s) 229
SgrBI CCGCGG 1 cut(s) 229
SinI GGWCC 2 cut(s) 415, 430
SlaI CTCGAG 1 cut(s) 502
SmlI CTYRAG 1 cut(s) 502
SmoI CTYRAG 1 cut(s) 502
Sse9I AATT 2 cut(s) 385, 742
SspMI CTAG 1 cut(s) 651
StyD4I CCNGG 4 cut(s) 185, 216, 290, 417
TaiI ACGT 4 cut(s) 311, 348, 476, 729
TaqI TCGA 5 cut(s) 60, 78, 438, 503, 630
TasI AATT 2 cut(s) 385, 742
TauI GCSGC 8 cut(s) 129, 231, 238, 332, 353, 455, 458, 498
TfiI GAWTC 1 cut(s) 89
TseFI GTSAC 1 cut(s) 115
TseI GCWGC 8 cut(s) 22, 25, 46, 49, 52, 464, 507, 510
Tsp45I GTSAC 1 cut(s) 115
TspDTI ATGAA 2 cut(s) 17, 558
TspGWI ACGGA 1 cut(s) 754
Van91I CCANNNNNTGG 1 cut(s) 297
VpaK11BI GGWCC 2 cut(s) 415, 430
XapI RAATTY 2 cut(s) 385, 742
XceI RCATGY 1 cut(s) 637
XhoI CTCGAG 1 cut(s) 502
XspI CTAG 1 cut(s) 651
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.