Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0039534.1

Orthogroup ID

OG0000958

Physical Location & Seq

Genomic Coordinates Reverse (-)

2311 .. 2902

Gene Structure 592 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0039534.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 592 bp

ggtgatactagcttccagcaggccgaagaagcgagccgggaggcgtgtgttcaaggagactcgccacccggtctaccgcggtgtgaggcggaggaacaacaacaagtgggtgtgcgaggtcagggagcccaacaagaagaccaggatttggctggggacgtaccccactgccgagatggcgggtcgggcacacgacgtggctgcattggcccttagggggaagcaggcatgcctcaatttcgctgattccgcttggcgcttgcccgttccggcttccaaagaccagctcgacatccgcagggccgccgccgaggctgccgagacatttcggcccgaggagttcggcggcgtctcaagcagctgcgacgacaacgagagggaacatgagaatgagaaagctgcgacggacaacgagaaggagaatggcttcttcgaggatgatgaggccgtcttcgacatgcccaggttgctgactaatatggcggagggtctactactctctccccctcgtcattacttggacggtgtgaaccggggcgacgatgacgtggaaagcgggtccagtctcaacctgtggagctactcaatatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0001558 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009889 GO:0009987 GO:0010035 GO:0010371 GO:0010468 GO:0010556 GO:0010565 GO:0010817 GO:0016143 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0019748 GO:0019757 GO:0019760 GO:0022603 GO:0022604 GO:0031323 GO:0031326 GO:0032350 GO:0040008 GO:0040034 GO:0042221 GO:0043436 GO:0043455 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0046885 GO:0046890 GO:0048506 GO:0048509 GO:0048510 GO:0048638 GO:0050789 GO:0050793 GO:0050794 GO:0050826 GO:0050896 GO:0051128 GO:0051171 GO:0051252 GO:0051510 GO:0060255 GO:0062012 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

196

Amino Acids

22.15

Weight (kDa)

6.51

Isoelectric Point (pI)

59.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000958)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12610 AT1G63030 AT1G63030
fragaria_vesca	FvH4_5g01440
malus_domestica	MD04G1067800.v1.1 MD04G1067900.v1.1 MD06G1072300.v1.1
prunus_persica	Prupe.5G089900_v2.0.a1 Prupe.5G090000_v2.0.a1 Prupe.5G090100_v2.0.a1 Prupe.5G090200_v2.0.a1 Prupe.5G090500_v2.0.a1
pyrus_communis	pycom04g06140 pycom06g07110 pycom06g07120
rosa_chinensis	RchiOBHm_Chr7g0199251 RchiOBHm_Chr7g0199301 RchiOBHm_Chr7g0199331 RchiOBHm_Chr7g0199351 RchiOBHm_Chr7g0199381
rosa_laevigata	RLG00000002739 RLG00000002740 RLG00000003796 RLG00000003799 RLG00000003801
rosa_multiflora	Rmu_co8046292.1_g000001 Rmu_co8280319.1_g000001 Rmu_sc0000855.1_g000009 Rmu_sc0000950.1_g000001 Rmu_sc0000950.1_g000005 Rmu_sc0007820.1_g000002 Rmu_sc0010720.1_g000001 Rmu_sc0039534.1_g000001
rosa_roxburghii	Rroxscaffold_3G00256750 Rroxscaffold_3G00256770 Rroxscaffold_3G00256870 Rroxscaffold_5G00359530
rosa_rugosa	Rorug07G0053500 Rorug07G0053500 Rorug07G0053500 Rorug07G0053800
rosa_samantha	Rh4BG264100 Rh7AG177700 Rh7AG177900 Rh7AG178000 Rh7AG178100 Rh7AG178600 Rh7BG181300 Rh7BG181400 Rh7BG181600 Rh7BG181900 Rh7BG182100 Rh7CG186800 Rh7CG187000 Rh7CG187200 Rh7CG187400 Rh7DG180800 Rh7DG181700
rosa_wichuraiana	Rw7G015620 Rw7G015630 Rw7G015650 Rw7G015670 Rw7G015680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	148
AccI	GTMKAC	2 cut(s)	73, 491
AccII	CGCG	1 cut(s)	79
AcyI	GRCGYC	1 cut(s)	349
AdeI	CACNNNGTG	1 cut(s)	197
AfaI	GTAC	1 cut(s)	162
AfiI	CCNNNNNNNGG	2 cut(s)	148, 217
AgsI	TTSAA	1 cut(s)	53
AjiI	CACGTC	2 cut(s)	197, 548
AjnI	CCWGG	2 cut(s)	141, 462
AluBI	AGCT	5 cut(s)	12, 287, 361, 399, 580
AluI	AGCT	5 cut(s)	12, 287, 361, 399, 580
Alw26I	GTCTC	4 cut(s)	51, 315, 356, 570
Ama87I	CYCGRG	1 cut(s)	333
AoxI	GGCC	5 cut(s)	21, 208, 301, 330, 445
ApeKI	GCWGC	5 cut(s)	201, 315, 358, 361, 399
Asp700I	GAANNNNTTC	1 cut(s)	426
AspLEI	GCGC	1 cut(s)	259
AspS9I	GGNCC	4 cut(s)	209, 301, 331, 559
AsuC2I	CCSGG	3 cut(s)	38, 69, 534
AsuHPI	GGTGA	1 cut(s)	14
AvaI	CYCGRG	1 cut(s)	333
AvaII	GGWCC	1 cut(s)	559
AxyI	CCTNAGG	1 cut(s)	213
BaeGI	GKGCMC	1 cut(s)	191
BanII	GRGCYC	1 cut(s)	130
BbsI	GAAGAC	2 cut(s)	144, 443
BbvI	GCAGC	5 cut(s)	188, 302, 348, 370, 386
BccI	CCATC	1 cut(s)	170
BceAI	ACGGC	1 cut(s)	432
BcgI	CGANNNNNNTGC	2 cut(s)	183, 217
BciT130I	CCWGG	2 cut(s)	143, 464
BcnI	CCSGG	3 cut(s)	38, 69, 534
BcoDI	GTCTC	4 cut(s)	51, 315, 356, 570
BfaI	CTAG	1 cut(s)	9
BfoI	RGCGCY	1 cut(s)	260
BglI	GCCNNNNNGGC	2 cut(s)	177, 312
BisI	GCNGC	8 cut(s)	202, 304, 307, 316, 347, 359, 362, 400
BlsI	GCNGC	8 cut(s)	203, 305, 308, 317, 348, 360, 363, 401
Bme1390I	CCNGG	5 cut(s)	38, 69, 143, 464, 534
Bme18I	GGWCC	1 cut(s)	559
BmeT110I	CYCGRG	1 cut(s)	333
BmgBI	CACGTC	2 cut(s)	197, 548
BmgT120I	GGNCC	4 cut(s)	209, 301, 331, 559
BmiI	GGNNCC	2 cut(s)	127, 560
BmrFI	CCNGG	5 cut(s)	38, 69, 143, 464, 534
BpiI	GAAGAC	2 cut(s)	144, 443
BpuEI	CTTGAG	1 cut(s)	338
BpuMI	CCSGG	3 cut(s)	38, 69, 534
BsaHI	GRCGYC	1 cut(s)	349
BsaJI	CCNNGG	5 cut(s)	77, 310, 334, 462, 533
Bsc4I	CCNNNNNNNGG	2 cut(s)	148, 217
Bse1I	ACTGG	1 cut(s)	562
Bse21I	CCTNAGG	1 cut(s)	213
BseBI	CCWGG	2 cut(s)	143, 464
BseDI	CCNNGG	5 cut(s)	77, 310, 334, 462, 533
BseGI	GGATG	2 cut(s)	292, 443
BseLI	CCNNNNNNNGG	2 cut(s)	148, 217
BseNI	ACTGG	1 cut(s)	562
BseRI	GAGGAG	1 cut(s)	351
BseSI	GKGCMC	1 cut(s)	191
BseXI	GCAGC	5 cut(s)	188, 302, 348, 370, 386
BseYI	CCCAGC	1 cut(s)	152
Bsh1236I	CGCG	1 cut(s)	79
BshFI	GGCC	5 cut(s)	23, 210, 303, 332, 447
BsiHKCI	CYCGRG	1 cut(s)	333
BsiSI	CCGG	4 cut(s)	37, 69, 270, 533
BslFI	GGGAC	1 cut(s)	170
BslI	CCNNNNNNNGG	2 cut(s)	148, 217
BsmAI	GTCTC	4 cut(s)	51, 315, 356, 570
BsmBI	CGTCTC	1 cut(s)	356
BsmFI	GGGAC	1 cut(s)	170
BsnI	GGCC	5 cut(s)	23, 210, 303, 332, 447
BsoBI	CYCGRG	1 cut(s)	333
Bsp1286I	GDGCHC	2 cut(s)	130, 191
BspANI	GGCC	5 cut(s)	23, 210, 303, 332, 447
BspFNI	CGCG	1 cut(s)	79
BspLI	GGNNCC	2 cut(s)	127, 560
BsrI	ACTGG	1 cut(s)	562
BssECI	CCNNGG	5 cut(s)	77, 310, 334, 462, 533
BssNI	GRCGYC	1 cut(s)	349
Bst2UI	CCWGG	2 cut(s)	143, 464
Bst4CI	ACNGT	1 cut(s)	525
BstACI	GRCGYC	1 cut(s)	349
BstC8I	GCNNGC	5 cut(s)	21, 34, 226, 230, 261
BstDEI	CTNAG	1 cut(s)	213
BstDSI	CCRYGG	1 cut(s)	77
BstF5I	GGATG	2 cut(s)	292, 443
BstFNI	CGCG	1 cut(s)	79
BstH2I	RGCGCY	1 cut(s)	260
BstHHI	GCGC	1 cut(s)	259
BstMAI	GTCTC	4 cut(s)	51, 315, 356, 570
BstMWI	GCNNNNNNNGC	9 cut(s)	29, 177, 186, 207, 249, 312, 315, 355, 467
BstNI	CCWGG	2 cut(s)	143, 464
BstNSI	RCATGY	2 cut(s)	232, 461
BstSCI	CCNGG	5 cut(s)	36, 67, 141, 462, 532
BstSLI	GKGCMC	1 cut(s)	191
BstUI	CGCG	1 cut(s)	79
BstV1I	GCAGC	5 cut(s)	188, 302, 348, 370, 386
BstV2I	GAAGAC	2 cut(s)	144, 443
Bsu36I	CCTNAGG	1 cut(s)	213
BsuRI	GGCC	5 cut(s)	23, 210, 303, 332, 447
BtgI	CCRYGG	1 cut(s)	77
BtrI	CACGTC	2 cut(s)	197, 548
BtsCI	GGATG	2 cut(s)	292, 443
BtsI	GCAGTG	1 cut(s)	166
BtsIMutI	CAGTG	1 cut(s)	166
Cac8I	GCNNGC	5 cut(s)	21, 34, 226, 230, 261
CfoI	GCGC	1 cut(s)	259
Cfr13I	GGNCC	4 cut(s)	209, 301, 331, 559
Cfr42I	CCGCGG	1 cut(s)	80
CseI	GACGC	1 cut(s)	338
Csp6I	GTAC	1 cut(s)	161
CviAII	CATG	3 cut(s)	229, 384, 458
CviQI	GTAC	1 cut(s)	161
DdeI	CTNAG	1 cut(s)	213
DraIII	CACNNNGTG	1 cut(s)	197
EciI	GGCGGA	2 cut(s)	104, 498
Eco24I	GRGCYC	1 cut(s)	130
Eco47I	GGWCC	1 cut(s)	559
Eco81I	CCTNAGG	1 cut(s)	213
Eco88I	CYCGRG	1 cut(s)	333
EcoRII	CCWGG	2 cut(s)	141, 462
EcoT38I	GRGCYC	1 cut(s)	130
Esp3I	CGTCTC	1 cut(s)	356
FaeI	CATG	3 cut(s)	232, 387, 461
FaiI	YATR	5 cut(s)	230, 385, 459, 480, 590
FaqI	GGGAC	1 cut(s)	170
FatI	CATG	3 cut(s)	228, 383, 457
FauI	CCCGC	2 cut(s)	173, 549
FblI	GTMKAC	2 cut(s)	73, 491
Fnu4HI	GCNGC	8 cut(s)	202, 304, 307, 316, 347, 359, 362, 400
FokI	GGATG	2 cut(s)	279, 450
FriOI	GRGCYC	1 cut(s)	130
Fsp4HI	GCNGC	8 cut(s)	202, 304, 307, 316, 347, 359, 362, 400
FspBI	CTAG	1 cut(s)	9
GlaI	GCGC	1 cut(s)	258
GluI	GCNGC	8 cut(s)	202, 304, 307, 316, 347, 359, 362, 400
GsaI	CCCAGC	1 cut(s)	156
HaeII	RGCGCY	1 cut(s)	260
HaeIII	GGCC	5 cut(s)	23, 210, 303, 332, 447
HapII	CCGG	4 cut(s)	37, 69, 270, 533
HgaI	GACGC	1 cut(s)	338
HhaI	GCGC	1 cut(s)	259
Hin1I	GRCGYC	1 cut(s)	349
Hin1II	CATG	3 cut(s)	232, 387, 461
Hin6I	GCGC	1 cut(s)	257
HinP1I	GCGC	1 cut(s)	257
HinfI	GANTC	2 cut(s)	59, 246
HpaII	CCGG	4 cut(s)	37, 69, 270, 533
HphI	GGTGA	1 cut(s)	14
Hpy166II	GTNNAC	3 cut(s)	74, 492, 530
Hpy8I	GTNNAC	3 cut(s)	74, 492, 530
Hpy99I	CGWCG	4 cut(s)	198, 369, 407, 543
HpyAV	CCTTC	1 cut(s)	410
HpyCH4III	ACNGT	1 cut(s)	525
HpyCH4IV	ACGT	3 cut(s)	159, 196, 547
HpyCH4V	TGCA	1 cut(s)	204
HpyF10VI	GCNNNNNNNGC	9 cut(s)	29, 177, 186, 207, 249, 312, 315, 355, 467
HpyF3I	CTNAG	1 cut(s)	213
HpySE526I	ACGT	3 cut(s)	159, 196, 547
Hsp92I	GRCGYC	1 cut(s)	349
Hsp92II	CATG	3 cut(s)	232, 387, 461
HspAI	GCGC	1 cut(s)	257
KspI	CCGCGG	1 cut(s)	80
LmnI	GCTCC	2 cut(s)	125, 577
Lsp1109I	GCAGC	5 cut(s)	188, 302, 348, 370, 386
MaeI	CTAG	1 cut(s)	9
MaeII	ACGT	3 cut(s)	159, 196, 547
MboII	GAAGA	4 cut(s)	38, 149, 422, 443
MhlI	GDGCHC	2 cut(s)	130, 191
MluCI	AATT	1 cut(s)	236
MlyI	GAGTC	1 cut(s)	53
MroXI	GAANNNNTTC	1 cut(s)	426
MslI	CAYNNNNRTG	1 cut(s)	388
MspA1I	CMGCKG	2 cut(s)	79, 361
MspI	CCGG	4 cut(s)	37, 69, 270, 533
MspR9I	CCNGG	5 cut(s)	38, 69, 143, 464, 534
MvaI	CCWGG	2 cut(s)	143, 464
MvnI	CGCG	1 cut(s)	79
MwoI	GCNNNNNNNGC	9 cut(s)	29, 177, 186, 207, 249, 312, 315, 355, 467
NciI	CCSGG	3 cut(s)	38, 69, 534
NlaIII	CATG	3 cut(s)	232, 387, 461
NlaIV	GGNNCC	2 cut(s)	127, 560
NmeAIII	GCCGAG	3 cut(s)	197, 335, 344
NspI	RCATGY	2 cut(s)	232, 461
PaeI	GCATGC	1 cut(s)	232
PdmI	GAANNNNTTC	1 cut(s)	426
PfeI	GAWTC	1 cut(s)	246
PflMI	CCANNNNNTGG	1 cut(s)	148
PkrI	GCNGC	8 cut(s)	203, 305, 308, 317, 348, 360, 363, 401
PleI	GAGTC	1 cut(s)	53
PpsI	GAGTC	1 cut(s)	53
Psp6I	CCWGG	2 cut(s)	141, 462
PspFI	CCCAGC	1 cut(s)	152
PspGI	CCWGG	2 cut(s)	141, 462
PspN4I	GGNNCC	2 cut(s)	127, 560
PspPI	GGNCC	4 cut(s)	209, 301, 331, 559
PvuII	CAGCTG	1 cut(s)	361
RsaI	GTAC	1 cut(s)	162
RsaNI	GTAC	1 cut(s)	161
RseI	CAYNNNNRTG	1 cut(s)	388
SacII	CCGCGG	1 cut(s)	80
SatI	GCNGC	8 cut(s)	202, 304, 307, 316, 347, 359, 362, 400
Sau96I	GGNCC	4 cut(s)	209, 301, 331, 559
SchI	GAGTC	1 cut(s)	53
ScrFI	CCNGG	5 cut(s)	38, 69, 143, 464, 534
SduI	GDGCHC	2 cut(s)	130, 191
Sfr303I	CCGCGG	1 cut(s)	80
SgrBI	CCGCGG	1 cut(s)	80
SinI	GGWCC	1 cut(s)	559
SmiMI	CAYNNNNRTG	1 cut(s)	388
SmlI	CTYRAG	1 cut(s)	353
SmoI	CTYRAG	1 cut(s)	353
SphI	GCATGC	1 cut(s)	232
Sse9I	AATT	1 cut(s)	236
SspMI	CTAG	1 cut(s)	9
StyD4I	CCNGG	5 cut(s)	36, 67, 141, 462, 532
TaaI	ACNGT	1 cut(s)	525
TaiI	ACGT	3 cut(s)	162, 199, 550
TaqI	TCGA	3 cut(s)	289, 433, 454
TasI	AATT	1 cut(s)	236
TauI	GCSGC	3 cut(s)	306, 309, 349
TfiI	GAWTC	1 cut(s)	246
TscAI	CASTG	1 cut(s)	173
TseI	GCWGC	5 cut(s)	201, 315, 358, 361, 399
TspGWI	ACGGA	1 cut(s)	420
TspRI	CASTG	1 cut(s)	173
Van91I	CCANNNNNTGG	1 cut(s)	148
VpaK11BI	GGWCC	1 cut(s)	559
XceI	RCATGY	2 cut(s)	232, 461
XcmI	CCANNNNNNNNNTGG	2 cut(s)	149, 173
XmiI	GTMKAC	2 cut(s)	73, 491
XmnI	GAANNNNTTC	1 cut(s)	426
XspI	CTAG	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.