Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0011649

Physical Location & Seq

Genomic Coordinates Forward (+)

18015636 .. 18016705

Gene Structure 1070 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1072400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGCAGTCTATGCCCATCTATGTCTTTGCCCCATACAAATACCGTGGCACTCTAAACATGATGTTCCAATTGTCAATAACTCTTGGAATACTTGCTGCTGGTGTCATAAACTATTTGTTTGCTGAGATCAAAGGAGGCTGGGGATGGCGTTTGAGTTTGGGTAGTGTTGTAGCCCCTGCAATTATGATCATAATTGGCGCGTTAGTTTTACCGGAAACTCCAAACACTTTGGTTGAGCGTGGAAAGAATGAAGAAGCTAAACCTCAACTCCTCAGAGGTTTTGCGAATATTGACAAAGAGTTTGATGACCTACTCGCGGCCAATGATGCATCCAAGTTGGGTTGGAAAGAGGGCCCTTTTCTTGGAGGGTGGTGCTCAAATGTTCCTCACTCAGATGATTATTGGATTGCAATGGCTCTTAAATTTGGAGTTAGTGGCAACCCTGGTGTATTGTCCAAGGGATTTGCTCATGGTTTGGTGGTCTGCATCTGTATATATGTTGCTGGATTTGCTTGGTCGGTGCCAAGTGAACTTTTCCCTCTCGAAGTAAGGTCAGCTGCACAATCCATCAACGTCTCTACCAACATGATCTTCACCTTCGCCATAGCTCAAGATTTCACCATAATGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

211

Amino Acids

22.87

Weight (kDa)

5.66

Isoelectric Point (pI)

31.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	9 - 111	1.2e-22	Sugar (and other) transporter
Sugar_tr	PF00083	144 - 209	8.7e-09	Sugar (and other) transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011649)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21480
fragaria_vesca	FvH4_5g01480
malus_domestica	MD02G1190700.v1.1 MD05G1076900.v1.1 MD06G1072400.v1.1
prunus_persica	Prupe.1G155000_v2.0.a1 Prupe.5G083900_v2.0.a1 Prupe.5G090900_v2.0.a1 Prupe.5G091100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0199221
rosa_laevigata	RLG00000003805
rosa_multiflora	Rmu_sc0000950.1_g000019
rosa_roxburghii	Rroxscaffold_3G00256950
rosa_rugosa	Rorug07G0053500
rosa_samantha	Rh7AG177300 Rh7BG180800 Rh7CG186500 Rh7DG180400
rosa_wichuraiana	Rw7G015600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	520
AccII	CGCG	2 cut(s)	200, 317
AciI	CCGC	1 cut(s)	317
AcoI	YGGCCR	1 cut(s)	318
AcsI	RAATTY	1 cut(s)	422
AfiI	CCNNNNNNNGG	2 cut(s)	316, 362
AjnI	CCWGG	1 cut(s)	442
AjuI	GAANNNNNNNTTGG	2 cut(s)	575, 607
AluBI	AGCT	3 cut(s)	257, 557, 608
AluI	AGCT	3 cut(s)	257, 557, 608
Alw21I	GWGCWC	1 cut(s)	377
Alw26I	GTCTC	1 cut(s)	580
AoxI	GGCC	2 cut(s)	318, 352
ApaI	GGGCCC	1 cut(s)	356
ApeKI	GCWGC	2 cut(s)	95, 557
ApoI	RAATTY	1 cut(s)	422
ArsI	GACNNNNNNTTYG	2 cut(s)	284, 316
AspLEI	GCGC	1 cut(s)	200
AspS9I	GGNCC	2 cut(s)	352, 353
AsuHPI	GGTGA	2 cut(s)	586, 610
BaeGI	GKGCMC	1 cut(s)	356
BanI	GGYRCC	1 cut(s)	520
BanII	GRGCYC	1 cut(s)	356
Bbv12I	GWGCWC	1 cut(s)	377
BbvI	GCAGC	2 cut(s)	82, 544
BccI	CCATC	3 cut(s)	23, 138, 575
BciT130I	CCWGG	1 cut(s)	444
BclI	TGATCA	1 cut(s)	186
BcoDI	GTCTC	1 cut(s)	580
BisI	GCNGC	3 cut(s)	96, 318, 558
BlsI	GCNGC	3 cut(s)	97, 319, 559
Bme1390I	CCNGG	1 cut(s)	444
BmgT120I	GGNCC	2 cut(s)	352, 353
BmiI	GGNNCC	2 cut(s)	354, 522
BmrFI	CCNGG	1 cut(s)	444
BmsI	GCATC	3 cut(s)	316, 338, 495
BpuEI	CTTGAG	1 cut(s)	594
BsaJI	CCNNGG	3 cut(s)	43, 442, 456
BsaWI	WCCGGW	1 cut(s)	211
BsaXI	ACNNNNNCTCC	2 cut(s)	252, 282
Bsc4I	CCNNNNNNNGG	2 cut(s)	316, 362
Bse3DI	GCAATG	1 cut(s)	417
BseBI	CCWGG	1 cut(s)	444
BseDI	CCNNGG	3 cut(s)	43, 442, 456
BseGI	GGATG	2 cut(s)	149, 329
BseLI	CCNNNNNNNGG	2 cut(s)	316, 362
BseMI	GCAATG	1 cut(s)	417
BseMII	CTCAG	3 cut(s)	114, 286, 405
BseRI	GAGGAG	1 cut(s)	260
BseSI	GKGCMC	1 cut(s)	356
BseXI	GCAGC	2 cut(s)	82, 544
BseYI	CCCAGC	1 cut(s)	138
BsgI	GTGCAG	1 cut(s)	543
Bsh1236I	CGCG	2 cut(s)	200, 317
BshFI	GGCC	2 cut(s)	320, 354
BshNI	GGYRCC	1 cut(s)	520
BsiHKAI	GWGCWC	1 cut(s)	377
BsiSI	CCGG	1 cut(s)	212
BslI	CCNNNNNNNGG	2 cut(s)	316, 362
BsmAI	GTCTC	1 cut(s)	580
BsmBI	CGTCTC	1 cut(s)	580
BsnI	GGCC	2 cut(s)	320, 354
Bsp120I	GGGCCC	1 cut(s)	352
Bsp1286I	GDGCHC	2 cut(s)	356, 377
Bsp143I	GATC	3 cut(s)	126, 186, 588
BspACI	CCGC	1 cut(s)	317
BspANI	GGCC	2 cut(s)	320, 354
BspCNI	CTCAG	3 cut(s)	115, 285, 404
BspFNI	CGCG	2 cut(s)	200, 317
BspLI	GGNNCC	2 cut(s)	354, 522
BspT107I	GGYRCC	1 cut(s)	520
BsrDI	GCAATG	1 cut(s)	417
BssECI	CCNNGG	3 cut(s)	43, 442, 456
BssMI	GATC	3 cut(s)	126, 186, 588
BssT1I	CCWWGG	1 cut(s)	456
Bst2UI	CCWGG	1 cut(s)	444
Bst4CI	ACNGT	1 cut(s)	44
BstAPI	GCANNNNNTGC	1 cut(s)	10
BstDEI	CTNAG	3 cut(s)	123, 272, 391
BstDSI	CCRYGG	1 cut(s)	43
BstF5I	GGATG	2 cut(s)	149, 329
BstFNI	CGCG	2 cut(s)	200, 317
BstHHI	GCGC	1 cut(s)	200
BstKTI	GATC	3 cut(s)	129, 189, 591
BstMAI	GTCTC	1 cut(s)	580
BstMBI	GATC	3 cut(s)	126, 186, 588
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 326, 509
BstNI	CCWGG	1 cut(s)	444
BstSCI	CCNGG	1 cut(s)	442
BstSLI	GKGCMC	1 cut(s)	356
BstUI	CGCG	2 cut(s)	200, 317
BstV1I	GCAGC	2 cut(s)	82, 544
BsuRI	GGCC	2 cut(s)	320, 354
BtgI	CCRYGG	1 cut(s)	43
BtsCI	GGATG	2 cut(s)	149, 329
CfoI	GCGC	1 cut(s)	200
Cfr13I	GGNCC	2 cut(s)	352, 353
CspCI	CAANNNNNGTGG	2 cut(s)	25, 60
CviAII	CATG	3 cut(s)	58, 470, 586
CviJI	RGCY	8 cut(s)	138, 173, 257, 320, 354, 416, 557, 608
CviKI_1	RGCY	8 cut(s)	138, 173, 257, 320, 354, 416, 557, 608
DdeI	CTNAG	3 cut(s)	123, 272, 391
DpnI	GATC	3 cut(s)	128, 188, 590
DpnII	GATC	3 cut(s)	126, 186, 588
EaeI	YGGCCR	1 cut(s)	318
Eco130I	CCWWGG	1 cut(s)	456
Eco24I	GRGCYC	1 cut(s)	356
EcoO109I	RGGNCCY	2 cut(s)	352, 353
EcoRII	CCWGG	1 cut(s)	442
EcoT14I	CCWWGG	1 cut(s)	456
EcoT22I	ATGCAT	1 cut(s)	331
EcoT38I	GRGCYC	1 cut(s)	356
ErhI	CCWWGG	1 cut(s)	456
Esp3I	CGTCTC	1 cut(s)	580
FaeI	CATG	3 cut(s)	61, 473, 589
FatI	CATG	3 cut(s)	57, 469, 585
FbaI	TGATCA	1 cut(s)	186
Fnu4HI	GCNGC	3 cut(s)	96, 318, 558
FokI	GGATG	2 cut(s)	156, 316
FriOI	GRGCYC	1 cut(s)	356
Fsp4HI	GCNGC	3 cut(s)	96, 318, 558
GlaI	GCGC	1 cut(s)	199
GluI	GCNGC	3 cut(s)	96, 318, 558
GsaI	CCCAGC	1 cut(s)	142
HaeIII	GGCC	2 cut(s)	320, 354
HapII	CCGG	1 cut(s)	212
HhaI	GCGC	1 cut(s)	200
Hin1II	CATG	3 cut(s)	61, 473, 589
Hin6I	GCGC	1 cut(s)	198
HinP1I	GCGC	1 cut(s)	198
HpaII	CCGG	1 cut(s)	212
HphI	GGTGA	2 cut(s)	586, 610
Hpy166II	GTNNAC	1 cut(s)	530
Hpy188I	TCNGA	2 cut(s)	275, 394
Hpy188III	TCNNGA	2 cut(s)	542, 611
Hpy8I	GTNNAC	1 cut(s)	530
HpyAV	CCTTC	1 cut(s)	607
HpyCH4III	ACNGT	1 cut(s)	44
HpyCH4IV	ACGT	1 cut(s)	573
HpyCH4V	TGCA	6 cut(s)	4, 179, 329, 410, 486, 560
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 326, 509
HpyF3I	CTNAG	3 cut(s)	123, 272, 391
HpySE526I	ACGT	1 cut(s)	573
Hsp92II	CATG	3 cut(s)	61, 473, 589
HspAI	GCGC	1 cut(s)	198
Ksp22I	TGATCA	1 cut(s)	186
Kzo9I	GATC	3 cut(s)	126, 186, 588
LpnPI	CCDG	7 cut(s)	84, 124, 189, 225, 429, 456, 489
Lsp1109I	GCAGC	2 cut(s)	82, 544
LweI	GCATC	3 cut(s)	316, 338, 495
MaeII	ACGT	1 cut(s)	573
MalI	GATC	3 cut(s)	128, 188, 590
MboI	GATC	3 cut(s)	126, 186, 588
MboII	GAAGA	2 cut(s)	263, 583
MfeI	CAATTG	1 cut(s)	68
MhlI	GDGCHC	2 cut(s)	356, 377
MluCI	AATT	4 cut(s)	68, 180, 192, 422
MmeI	TCCRAC	1 cut(s)	323
MnlI	CCTC	8 cut(s)	128, 269, 273, 281, 343, 359, 396, 549
Mph1103I	ATGCAT	1 cut(s)	331
MseI	TTAA	2 cut(s)	420, 631
MslI	CAYNNNNRTG	2 cut(s)	393, 623
MspA1I	CMGCKG	1 cut(s)	557
MspI	CCGG	1 cut(s)	212
MspR9I	CCNGG	1 cut(s)	444
MunI	CAATTG	1 cut(s)	68
MvaI	CCWGG	1 cut(s)	444
MvnI	CGCG	2 cut(s)	200, 317
MwoI	GCNNNNNNNGC	3 cut(s)	10, 326, 509
NdeII	GATC	3 cut(s)	126, 186, 588
NlaIII	CATG	3 cut(s)	61, 473, 589
NlaIV	GGNNCC	2 cut(s)	354, 522
NsiI	ATGCAT	1 cut(s)	331
PkrI	GCNGC	3 cut(s)	97, 319, 559
Psp6I	CCWGG	1 cut(s)	442
PspFI	CCCAGC	1 cut(s)	138
PspGI	CCWGG	1 cut(s)	442
PspN4I	GGNNCC	2 cut(s)	354, 522
PspOMI	GGGCCC	1 cut(s)	352
PspPI	GGNCC	2 cut(s)	352, 353
PvuII	CAGCTG	1 cut(s)	557
RseI	CAYNNNNRTG	2 cut(s)	393, 623
SaqAI	TTAA	2 cut(s)	420, 631
SatI	GCNGC	3 cut(s)	96, 318, 558
Sau3AI	GATC	3 cut(s)	126, 186, 588
Sau96I	GGNCC	2 cut(s)	352, 353
ScrFI	CCNGG	1 cut(s)	444
SduI	GDGCHC	2 cut(s)	356, 377
SetI	ASST	9 cut(s)	259, 265, 280, 312, 554, 559, 576, 599, 610
SfaNI	GCATC	3 cut(s)	316, 338, 495
SmiMI	CAYNNNNRTG	2 cut(s)	393, 623
SmlI	CTYRAG	1 cut(s)	609
SmoI	CTYRAG	1 cut(s)	609
Sse9I	AATT	4 cut(s)	68, 180, 192, 422
SsiI	CCGC	1 cut(s)	317
SspI	AATATT	1 cut(s)	289
StyD4I	CCNGG	1 cut(s)	442
StyI	CCWWGG	1 cut(s)	456
TaaI	ACNGT	1 cut(s)	44
TaiI	ACGT	1 cut(s)	576
TaqI	TCGA	1 cut(s)	543
TasI	AATT	4 cut(s)	68, 180, 192, 422
TauI	GCSGC	1 cut(s)	320
Tru1I	TTAA	2 cut(s)	420, 631
Tru9I	TTAA	2 cut(s)	420, 631
TseI	GCWGC	2 cut(s)	95, 557
TspDTI	ATGAA	1 cut(s)	264
XapI	RAATTY	1 cut(s)	422
Zsp2I	ATGCAT	1 cut(s)	331

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.