Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0011649

Physical Location & Seq

Genomic Coordinates Reverse (-)

12234605 .. 12235403

Gene Structure 799 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G155000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGCTGGGGGCGATATAGCTCCATCGAGTGGTGGAAAACAACACCCCGGTAAACTCACAGCTAGGGTTCTTATAACATGTATTGTTGCGGCTACCGGTGGTCTGATTTTTGGGTACGACCTTGGAGTTTCAGGCGGTGTGACATCGATGGACTCTTTCTTGAAACAGTTCTTTCCAGCGGTTTACCAGAAAGAGTCTTCAATCAAGCCTTCCGACGATCAGTACTGCAAATTCAACAGCCAGACACTTACACTTTTCACATCTTCGCTATATTTGGCTGCTCTGGTTGCATGCATTTTTGCATCAACTATAACCAGAGTGTGTGGTCGCCGGCTCACAATGATCTTGGGTGGAGTCCTTTTCTTGGCTGGTGCCCTGGTCAATGCCTTTGCTAATGCTGTTTGGATGCTTTATGTTGGTCGTCTACTTCTTGGTTTTGGTATTGGATGTGCCAATCAGTCTGTGCCGATCTATGTCTCTGAAACAGCCCCATCTAAATACCGTGGTGCTCTCAACATGATGTTCCAATTGTCGATCACAATTGGAATCCTTGCTGCTGGTGTGCTTAACTATTTCTTTGCGGAGATCAAAGGCGGTGGGGGGTGGCGTTTGAGTTTGGGAGGTGCTGCGTATCAGATTGGTAAAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

217

Amino Acids

22.74

Weight (kDa)

9.46

Isoelectric Point (pI)

33.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011649)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21480
fragaria_vesca	FvH4_5g01480
malus_domestica	MD02G1190700.v1.1 MD05G1076900.v1.1 MD06G1072400.v1.1
prunus_persica	Prupe.1G155000_v2.0.a1 Prupe.5G083900_v2.0.a1 Prupe.5G090900_v2.0.a1 Prupe.5G091100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0199221
rosa_laevigata	RLG00000003805
rosa_multiflora	Rmu_sc0000950.1_g000019
rosa_roxburghii	Rroxscaffold_3G00256950
rosa_rugosa	Rorug07G0053500
rosa_samantha	Rh7AG177300 Rh7BG180800 Rh7CG186500 Rh7DG180400
rosa_wichuraiana	Rw7G015600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	74
AccB1I	GGYRCC	1 cut(s)	371
AccB7I	CCANNNNNTGG	1 cut(s)	29
AccI	GTMKAC	1 cut(s)	424
AciI	CCGC	5 cut(s)	89, 135, 179, 581, 594
AcsI	RAATTY	1 cut(s)	230
AfaI	GTAC	2 cut(s)	116, 224
AfiI	CCNNNNNNNGG	2 cut(s)	29, 364
AflIII	ACRYGT	1 cut(s)	77
AgeI	ACCGGT	1 cut(s)	95
AgsI	TTSAA	3 cut(s)	163, 201, 235
AjnI	CCWGG	1 cut(s)	375
AluBI	AGCT	2 cut(s)	20, 62
AluI	AGCT	2 cut(s)	20, 62
Alw21I	GWGCWC	1 cut(s)	511
Alw26I	GTCTC	1 cut(s)	481
ApeKI	GCWGC	3 cut(s)	278, 554, 626
ApoI	RAATTY	1 cut(s)	230
AsiGI	ACCGGT	1 cut(s)	95
Asp700I	GAANNNNTTC	1 cut(s)	167
AsuC2I	CCSGG	1 cut(s)	48
BaeGI	GKGCMC	1 cut(s)	376
BanI	GGYRCC	1 cut(s)	371
BbsI	GAAGAC	1 cut(s)	189
Bbv12I	GWGCWC	1 cut(s)	511
BbvI	GCAGC	3 cut(s)	265, 541, 613
BccI	CCATC	3 cut(s)	31, 142, 499
BciT130I	CCWGG	1 cut(s)	377
BcnI	CCSGG	1 cut(s)	48
BcoDI	GTCTC	1 cut(s)	481
BfaI	CTAG	1 cut(s)	63
BisI	GCNGC	4 cut(s)	90, 279, 555, 627
BlsI	GCNGC	4 cut(s)	91, 280, 556, 628
BmcAI	AGTACT	1 cut(s)	224
Bme1390I	CCNGG	2 cut(s)	48, 377
BmiI	GGNNCC	1 cut(s)	373
BmrFI	CCNGG	2 cut(s)	48, 377
BmsI	GCATC	2 cut(s)	311, 396
BpiI	GAAGAC	1 cut(s)	189
BpuMI	CCSGG	1 cut(s)	48
Bsa29I	ATCGAT	1 cut(s)	146
BsaJI	CCNNGG	4 cut(s)	46, 121, 375, 502
BsaWI	WCCGGW	1 cut(s)	95
Bsc4I	CCNNNNNNNGG	2 cut(s)	29, 364
Bse118I	RCCGGY	2 cut(s)	95, 330
BseBI	CCWGG	1 cut(s)	377
BseCI	ATCGAT	1 cut(s)	146
BseDI	CCNNGG	4 cut(s)	46, 121, 375, 502
BseGI	GGATG	2 cut(s)	411, 452
BseLI	CCNNNNNNNGG	2 cut(s)	29, 364
BseSI	GKGCMC	1 cut(s)	376
BseXI	GCAGC	3 cut(s)	265, 541, 613
BseYI	CCCAGC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	371
BshTI	ACCGGT	1 cut(s)	95
BshVI	ATCGAT	1 cut(s)	146
BsiHKAI	GWGCWC	1 cut(s)	511
BsiSI	CCGG	3 cut(s)	48, 96, 331
BslI	CCNNNNNNNGG	2 cut(s)	29, 364
BsmAI	GTCTC	1 cut(s)	481
Bsp1286I	GDGCHC	2 cut(s)	376, 511
Bsp143I	GATC	5 cut(s)	217, 342, 468, 534, 585
BspACI	CCGC	5 cut(s)	89, 135, 179, 581, 594
BspDI	ATCGAT	1 cut(s)	146
BspLI	GGNNCC	1 cut(s)	373
BspT107I	GGYRCC	1 cut(s)	371
BsrFI	RCCGGY	2 cut(s)	95, 330
BssAI	RCCGGY	2 cut(s)	95, 330
BssECI	CCNNGG	4 cut(s)	46, 121, 375, 502
BssMI	GATC	5 cut(s)	217, 342, 468, 534, 585
BssT1I	CCWWGG	1 cut(s)	121
Bst2UI	CCWGG	1 cut(s)	377
Bst4CI	ACNGT	2 cut(s)	168, 503
BstC8I	GCNNGC	2 cut(s)	292, 332
BstDSI	CCRYGG	1 cut(s)	502
BstF5I	GGATG	2 cut(s)	411, 452
BstKTI	GATC	5 cut(s)	220, 345, 471, 537, 588
BstMAI	GTCTC	1 cut(s)	481
BstMBI	GATC	5 cut(s)	217, 342, 468, 534, 585
BstMWI	GCNNNNNNNGC	1 cut(s)	287
BstNI	CCWGG	1 cut(s)	377
BstNSI	RCATGY	2 cut(s)	81, 294
BstSCI	CCNGG	2 cut(s)	46, 375
BstSLI	GKGCMC	1 cut(s)	376
BstV1I	GCAGC	3 cut(s)	265, 541, 613
BstV2I	GAAGAC	1 cut(s)	189
Bsu15I	ATCGAT	1 cut(s)	146
BsuTUI	ATCGAT	1 cut(s)	146
BtgI	CCRYGG	1 cut(s)	502
BtsCI	GGATG	2 cut(s)	411, 452
Cac8I	GCNNGC	2 cut(s)	292, 332
Cfr10I	RCCGGY	2 cut(s)	95, 330
ClaI	ATCGAT	1 cut(s)	146
Csp6I	GTAC	2 cut(s)	115, 223
CspAI	ACCGGT	1 cut(s)	95
CspCI	CAANNNNNGTGG	2 cut(s)	577, 612
CviAII	CATG	3 cut(s)	78, 291, 517
CviQI	GTAC	2 cut(s)	115, 223
DpnI	GATC	5 cut(s)	219, 344, 470, 536, 587
DpnII	GATC	5 cut(s)	217, 342, 468, 534, 585
Eco130I	CCWWGG	1 cut(s)	121
EcoRII	CCWGG	1 cut(s)	375
EcoT14I	CCWWGG	1 cut(s)	121
EcoT22I	ATGCAT	1 cut(s)	296
ErhI	CCWWGG	1 cut(s)	121
FaeI	CATG	3 cut(s)	81, 294, 520
FaiI	YATR	9 cut(s)	17, 74, 79, 271, 292, 311, 414, 474, 518
FatI	CATG	3 cut(s)	77, 290, 516
FblI	GTMKAC	1 cut(s)	424
Fnu4HI	GCNGC	4 cut(s)	90, 279, 555, 627
FokI	GGATG	2 cut(s)	418, 459
Fsp4HI	GCNGC	4 cut(s)	90, 279, 555, 627
FspBI	CTAG	1 cut(s)	63
GluI	GCNGC	4 cut(s)	90, 279, 555, 627
GsaI	CCCAGC	1 cut(s)	9
HapII	CCGG	3 cut(s)	48, 96, 331
Hin1II	CATG	3 cut(s)	81, 294, 520
HinfI	GANTC	4 cut(s)	152, 194, 354, 546
HpaII	CCGG	3 cut(s)	48, 96, 331
Hpy166II	GTNNAC	3 cut(s)	53, 184, 425
Hpy188I	TCNGA	4 cut(s)	105, 214, 481, 636
Hpy188III	TCNNGA	1 cut(s)	160
Hpy8I	GTNNAC	3 cut(s)	53, 184, 425
Hpy99I	CGWCG	1 cut(s)	218
HpyAV	CCTTC	1 cut(s)	219
HpyCH4III	ACNGT	2 cut(s)	168, 503
HpyCH4V	TGCA	4 cut(s)	228, 290, 294, 302
HpyF10VI	GCNNNNNNNGC	1 cut(s)	287
Hsp92II	CATG	3 cut(s)	81, 294, 520
KroI	GCCGGC	1 cut(s)	330
KroNI	GCCGGC	1 cut(s)	332
Kzo9I	GATC	5 cut(s)	217, 342, 468, 534, 585
LmnI	GCTCC	1 cut(s)	25
Lsp1109I	GCAGC	3 cut(s)	265, 541, 613
LweI	GCATC	2 cut(s)	311, 396
MaeI	CTAG	1 cut(s)	63
MaeIII	GTNAC	1 cut(s)	139
MalI	GATC	5 cut(s)	219, 344, 470, 536, 587
MboI	GATC	5 cut(s)	217, 342, 468, 534, 585
MboII	GAAGA	2 cut(s)	189, 255
MfeI	CAATTG	2 cut(s)	527, 540
MhlI	GDGCHC	2 cut(s)	376, 511
MluCI	AATT	3 cut(s)	230, 527, 540
MlyI	GAGTC	3 cut(s)	146, 203, 363
MmeI	TCCRAC	1 cut(s)	237
MnlI	CCTC	1 cut(s)	614
Mph1103I	ATGCAT	1 cut(s)	296
MroNI	GCCGGC	1 cut(s)	330
MroXI	GAANNNNTTC	1 cut(s)	167
MseI	TTAA	1 cut(s)	567
MspA1I	CMGCKG	1 cut(s)	179
MspI	CCGG	3 cut(s)	48, 96, 331
MspR9I	CCNGG	2 cut(s)	48, 377
MunI	CAATTG	2 cut(s)	527, 540
MvaI	CCWGG	1 cut(s)	377
MwoI	GCNNNNNNNGC	1 cut(s)	287
NaeI	GCCGGC	1 cut(s)	332
NciI	CCSGG	1 cut(s)	48
NdeII	GATC	5 cut(s)	217, 342, 468, 534, 585
NgoMIV	GCCGGC	1 cut(s)	330
NlaIII	CATG	3 cut(s)	81, 294, 520
NlaIV	GGNNCC	1 cut(s)	373
NmuCI	GTSAC	1 cut(s)	139
NsiI	ATGCAT	1 cut(s)	296
NspI	RCATGY	2 cut(s)	81, 294
PaeI	GCATGC	1 cut(s)	294
PciI	ACATGT	1 cut(s)	77
PdiI	GCCGGC	1 cut(s)	332
PdmI	GAANNNNTTC	1 cut(s)	167
PfeI	GAWTC	1 cut(s)	546
PflMI	CCANNNNNTGG	1 cut(s)	29
PinAI	ACCGGT	1 cut(s)	95
PkrI	GCNGC	4 cut(s)	91, 280, 556, 628
PleI	GAGTC	3 cut(s)	146, 202, 362
PpsI	GAGTC	3 cut(s)	146, 202, 362
PscI	ACATGT	1 cut(s)	77
PsiI	TTATAA	1 cut(s)	74
Psp6I	CCWGG	1 cut(s)	375
PspFI	CCCAGC	1 cut(s)	5
PspGI	CCWGG	1 cut(s)	375
PspN4I	GGNNCC	1 cut(s)	373
RsaI	GTAC	2 cut(s)	116, 224
RsaNI	GTAC	2 cut(s)	115, 223
SaqAI	TTAA	1 cut(s)	567
SatI	GCNGC	4 cut(s)	90, 279, 555, 627
Sau3AI	GATC	5 cut(s)	217, 342, 468, 534, 585
ScaI	AGTACT	1 cut(s)	224
SchI	GAGTC	3 cut(s)	146, 203, 363
ScrFI	CCNGG	2 cut(s)	48, 377
SduI	GDGCHC	2 cut(s)	376, 511
SetI	ASST	4 cut(s)	22, 64, 123, 625
SfaNI	GCATC	2 cut(s)	311, 396
SphI	GCATGC	1 cut(s)	294
Sse9I	AATT	3 cut(s)	230, 527, 540
SsiI	CCGC	5 cut(s)	89, 135, 179, 581, 594
SspMI	CTAG	1 cut(s)	63
StyD4I	CCNGG	2 cut(s)	46, 375
StyI	CCWWGG	1 cut(s)	121
TaaI	ACNGT	2 cut(s)	168, 503
TaqI	TCGA	3 cut(s)	26, 146, 533
TasI	AATT	3 cut(s)	230, 527, 540
TatI	WGTACW	1 cut(s)	222
TauI	GCSGC	1 cut(s)	92
TfiI	GAWTC	1 cut(s)	546
Tru1I	TTAA	1 cut(s)	567
Tru9I	TTAA	1 cut(s)	567
TseFI	GTSAC	1 cut(s)	139
TseI	GCWGC	3 cut(s)	278, 554, 626
Tsp45I	GTSAC	1 cut(s)	139
Van91I	CCANNNNNTGG	1 cut(s)	29
XapI	RAATTY	1 cut(s)	230
XceI	RCATGY	2 cut(s)	81, 294
XmiI	GTMKAC	1 cut(s)	424
XmnI	GAANNNNTTC	1 cut(s)	167
XspI	CTAG	1 cut(s)	63
ZrmI	AGTACT	1 cut(s)	224
Zsp2I	ATGCAT	1 cut(s)	296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.