Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0011649

Physical Location & Seq

Genomic Coordinates Forward (+)

10124114 .. 10126399

Gene Structure 2286 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G090900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1554 bp

ATGGCTGGGGGCGGTATAGCTCCATCGAGTGGTGGAAAACAATACCCTGGTAAACTCACAGCTAGGGTTCTTATAACATGTATTGTTGCGGCCACCGGCGGTCTGATTTTTGGGTACGACCTTGGAGTTTCAGGCGGTGTTACATCCATGGACTCTTTCTTGAAACAGTTCTTTCCAGCGGTTTACCAGAAAGAGTCTTCGATCAAGCCTTCCGACGATCAATACTGCAAATTCGATAGCCAGACACTTACTCTTTTCACATCTTCGCTATATTTGGCTGCTCTAGTTGCATGCGTTTTTGCATCAACTATAACCAGAGTGTGTGGTCGCAGGCTCACAATGATCTTGGGTGGAGTTCTTTTCTTGGCTGGTGCCTTGGTCAATGCCTTTGCTAATGCTGTTTGGATGCTTTATGTTGGTCGTCTACTTCTTGGTTTTGGTATTGGATGTGCCAATCAGTCTGTGCCGATCTATGTCTCTGAAACAGCCCCATCTAAGTACCGTGGTGCTCTCAACATGATGTTCCAATTGTCGATCACAATTGGAATCCTTGCTGCTGGTGTGCTTAACTATTTCTTTGCCGAGATCAAAGGCGGTGGGGGATGGCGTTTGAGTTTGGGAGGTGCTGCAGTCCCTGCCATTATAATCATAGTTGGAGCATTGTTTTTACCCGATACACCAAACTCCTTGGTCGAGCGTGGCAAGCATGAGGAAGCCAAAGCTCAGCTTCTTAAGCTCAGAGGAGTTCCTAATGTTGATGAGGAGTTTAATGATCTAGTTGCGGCCAGTGAAGTATCCAAGTTGGTAAAACACCCTTGGGTTACCTTGTTGAGCAGGAAATATAGACCCCAGCTTGTATTTGCAATCGGCATCCCCGCCTTCCAGCAACTCACCGGCATGAACGTGATCACGTTTTATGCTCCTGTCTTGTTCAAAACAATGGGATTTGGAAGCAGTGCTTCTCTCATGTCAGCTGTCATCACCAATCTGGTTAATGCTTTAGCTACATTTGTCTCAATTCTCACTGTTGATAAGGTTGGAAGGAGGAAGCTTTTCTTACAGGGTGGTTGCCAAATGCTCCTCATGCAGGTGGCTGTTGGAATTGCTATGGCTGTTAAATTTGGGGTCAGCGGCAACCCTGGGAAGTTGACACTGGGGTTTGCTGTTCCCTTGGTGCTCTTGATCTGTGTTTACGTTGCTGGATTTGCCTGGTCATGGGGACCTCTAGGATGGTTGGTGCCCAGTGAAATTTTCCCACTTGAAGTAAGGTCTGCTGCTCAGGCTATCAATGTCTCCGTCAACATGATCTTCACCTTTGCCATAGCCCAAGTCTTCACAGCCATGCTCTGCCACATGAAGTTTGGCTTGTTCTTCTTCTTCTCAGTCTGCGTGGTGGTGATGAGCATTTTTATCTACAAATTGTTGCCCGAAACGAAAGGAGTTCCAATTGAAGAAATGCACACTGTGTGGGAGAACCATCCATTTTGGAGGAAATATGTGGTTAAAGATGAAGCCATTGCCATGGGCAAAGGCAAGGGCGGACAGAGTGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

518

Amino Acids

55.56

Weight (kDa)

9.37

Isoelectric Point (pI)

34.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011649)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21480
fragaria_vesca	FvH4_5g01480
malus_domestica	MD02G1190700.v1.1 MD05G1076900.v1.1 MD06G1072400.v1.1
prunus_persica	Prupe.1G155000_v2.0.a1 Prupe.5G083900_v2.0.a1 Prupe.5G090900_v2.0.a1 Prupe.5G091100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0199221
rosa_laevigata	RLG00000003805
rosa_multiflora	Rmu_sc0000950.1_g000019
rosa_roxburghii	Rroxscaffold_3G00256950
rosa_rugosa	Rorug07G0053500
rosa_samantha	Rh7AG177300 Rh7BG180800 Rh7CG186500 Rh7DG180400
rosa_wichuraiana	Rw7G015600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	74, 644
AarI	CACCTGC	1 cut(s)	1078
Acc36I	ACCTGC	1 cut(s)	1078
AccB1I	GGYRCC	2 cut(s)	371, 1237
AccB7I	CCANNNNNTGG	1 cut(s)	29
AccI	GTMKAC	1 cut(s)	424
AcoI	YGGCCR	2 cut(s)	90, 783
AcsI	RAATTY	3 cut(s)	230, 1118, 1248
AdeI	CACNNNGTG	2 cut(s)	1465, 1467
AfaI	GTAC	2 cut(s)	116, 500
AfiI	CCNNNNNNNGG	3 cut(s)	29, 1087, 1215
AflII	CTTAAG	1 cut(s)	731
AflIII	ACRYGT	1 cut(s)	77
AgsI	TTSAA	4 cut(s)	163, 934, 1262, 1451
AjnI	CCWGG	3 cut(s)	46, 1138, 1208
AluBI	AGCT	9 cut(s)	20, 62, 722, 727, 736, 853, 974, 1004, 1051
AluI	AGCT	9 cut(s)	20, 62, 722, 727, 736, 853, 974, 1004, 1051
Alw21I	GWGCWC	2 cut(s)	511, 1179
Alw26I	GTCTC	3 cut(s)	481, 1018, 1297
AlwNI	CAGNNNCTG	1 cut(s)	635
AoxI	GGCC	2 cut(s)	90, 783
ApeKI	GCWGC	4 cut(s)	278, 554, 626, 1274
ApoI	RAATTY	3 cut(s)	230, 1118, 1248
Asp700I	GAANNNNTTC	2 cut(s)	167, 1052
AspS9I	GGNCC	1 cut(s)	1220
AsuHPI	GGTGA	4 cut(s)	883, 973, 1303, 1408
AvaII	GGWCC	1 cut(s)	1220
BaeGI	GKGCMC	1 cut(s)	1242
BanI	GGYRCC	2 cut(s)	371, 1237
BbsI	GAAGAC	2 cut(s)	189, 1324
Bbv12I	GWGCWC	2 cut(s)	511, 1179
BbvI	GCAGC	4 cut(s)	265, 541, 613, 1261
BccI	CCATC	5 cut(s)	31, 499, 597, 1224, 1485
BciT130I	CCWGG	3 cut(s)	48, 1140, 1210
BciVI	GTATCC	1 cut(s)	805
BclI	TGATCA	1 cut(s)	906
BcoDI	GTCTC	3 cut(s)	481, 1018, 1297
BfaI	CTAG	4 cut(s)	63, 284, 776, 1226
BfmI	CTRYAG	1 cut(s)	627
BfrI	CTTAAG	1 cut(s)	731
BfuAI	ACCTGC	1 cut(s)	1078
BfuI	GTATCC	1 cut(s)	805
BisI	GCNGC	7 cut(s)	90, 279, 555, 627, 783, 1132, 1275
BlpI	GCTNAGC	1 cut(s)	723
BlsI	GCNGC	7 cut(s)	91, 280, 556, 628, 784, 1133, 1276
Bme1390I	CCNGG	3 cut(s)	48, 1140, 1210
Bme18I	GGWCC	1 cut(s)	1220
BmgT120I	GGNCC	1 cut(s)	1220
BmiI	GGNNCC	3 cut(s)	373, 1221, 1239
BmrFI	CCNGG	3 cut(s)	48, 1140, 1210
BmrI	ACTGGG	2 cut(s)	1163, 1236
BmsI	GCATC	3 cut(s)	311, 396, 879
BmuI	ACTGGG	2 cut(s)	1163, 1236
BpiI	GAAGAC	2 cut(s)	189, 1324
Bpu10I	CCTNAGC	1 cut(s)	1278
Bpu1102I	GCTNAGC	1 cut(s)	723
Bsc4I	CCNNNNNNNGG	3 cut(s)	29, 1087, 1215
Bse118I	RCCGGY	2 cut(s)	95, 893
Bse1I	ACTGG	3 cut(s)	786, 1158, 1242
Bse3DI	GCAATG	1 cut(s)	1515
BseBI	CCWGG	3 cut(s)	48, 1140, 1210
BseGI	GGATG	7 cut(s)	143, 411, 452, 608, 870, 1235, 1477
BseLI	CCNNNNNNNGG	3 cut(s)	29, 1087, 1215
BseMI	GCAATG	1 cut(s)	1515
BseMII	CTCAG	4 cut(s)	737, 751, 1292, 1395
BseNI	ACTGG	3 cut(s)	786, 1158, 1242
BseRI	GAGGAG	3 cut(s)	756, 776, 1070
BseSI	GKGCMC	1 cut(s)	1242
BseXI	GCAGC	4 cut(s)	265, 541, 613, 1261
BseYI	CCCAGC	2 cut(s)	5, 849
BshFI	GGCC	2 cut(s)	92, 785
BshNI	GGYRCC	2 cut(s)	371, 1237
BsiHKAI	GWGCWC	2 cut(s)	511, 1179
BsiSI	CCGG	2 cut(s)	96, 894
BslFI	GGGAC	2 cut(s)	617, 1233
BslI	CCNNNNNNNGG	3 cut(s)	29, 1087, 1215
BsmAI	GTCTC	3 cut(s)	481, 1018, 1297
BsmFI	GGGAC	2 cut(s)	617, 1233
BsnI	GGCC	2 cut(s)	92, 785
Bsp1286I	GDGCHC	3 cut(s)	511, 1179, 1242
Bsp1720I	GCTNAGC	1 cut(s)	723
Bsp19I	CCATGG	2 cut(s)	147, 1521
BspANI	GGCC	2 cut(s)	92, 785
BspCNI	CTCAG	4 cut(s)	736, 750, 1291, 1394
BspLI	GGNNCC	3 cut(s)	373, 1221, 1239
BspMAI	CTGCAG	1 cut(s)	631
BspMI	ACCTGC	1 cut(s)	1078
BspT107I	GGYRCC	2 cut(s)	371, 1237
BspTI	CTTAAG	1 cut(s)	731
BsrDI	GCAATG	1 cut(s)	1515
BsrFI	RCCGGY	2 cut(s)	95, 893
BsrI	ACTGG	3 cut(s)	786, 1158, 1242
BssAI	RCCGGY	2 cut(s)	95, 893
BssT1I	CCWWGG	7 cut(s)	121, 147, 375, 687, 815, 1170, 1521
Bst2UI	CCWGG	3 cut(s)	48, 1140, 1210
Bst4CI	ACNGT	4 cut(s)	168, 503, 1027, 1465
BstAFI	CTTAAG	1 cut(s)	731
BstAPI	GCANNNNNTGC	1 cut(s)	635
BstC8I	GCNNGC	3 cut(s)	292, 332, 704
BstDEI	CTNAG	5 cut(s)	495, 723, 737, 1278, 1381
BstDSI	CCRYGG	3 cut(s)	147, 502, 1521
BstEII	GGTNACC	1 cut(s)	820
BstENI	CCTNNNNNAGG	1 cut(s)	1085
BstF5I	GGATG	7 cut(s)	143, 411, 452, 608, 870, 1235, 1477
BstMAI	GTCTC	3 cut(s)	481, 1018, 1297
BstMWI	GCNNNNNNNGC	7 cut(s)	287, 635, 703, 733, 1084, 1205, 1280
BstNI	CCWGG	3 cut(s)	48, 1140, 1210
BstNSI	RCATGY	2 cut(s)	81, 294
BstPI	GGTNACC	1 cut(s)	820
BstSCI	CCNGG	3 cut(s)	46, 1138, 1208
BstSFI	CTRYAG	1 cut(s)	627
BstSLI	GKGCMC	1 cut(s)	1242
BstV1I	GCAGC	4 cut(s)	265, 541, 613, 1261
BstV2I	GAAGAC	2 cut(s)	189, 1324
BstXI	CCANNNNNNTGG	1 cut(s)	1522
BsuI	GTATCC	1 cut(s)	805
BsuRI	GGCC	2 cut(s)	92, 785
BtgI	CCRYGG	3 cut(s)	147, 502, 1521
BtsCI	GGATG	7 cut(s)	143, 411, 452, 608, 870, 1235, 1477
BtsI	GCAGTG	1 cut(s)	961
BtsIMutI	CAGTG	6 cut(s)	793, 961, 1023, 1151, 1249, 1461
BveI	ACCTGC	1 cut(s)	1078
Cac8I	GCNNGC	3 cut(s)	292, 332, 704
CaiI	CAGNNNCTG	1 cut(s)	635
Cfr10I	RCCGGY	2 cut(s)	95, 893
Cfr13I	GGNCC	1 cut(s)	1220
Csp6I	GTAC	2 cut(s)	115, 499
CspCI	CAANNNNNGTGG	2 cut(s)	577, 612
CviQI	GTAC	2 cut(s)	115, 499
DdeI	CTNAG	5 cut(s)	495, 723, 737, 1278, 1381
DraIII	CACNNNGTG	2 cut(s)	1465, 1467
EaeI	YGGCCR	2 cut(s)	90, 783
EciI	GGCGGA	1 cut(s)	1554
Eco130I	CCWWGG	7 cut(s)	121, 147, 375, 687, 815, 1170, 1521
Eco47I	GGWCC	1 cut(s)	1220
Eco91I	GGTNACC	1 cut(s)	820
EcoNI	CCTNNNNNAGG	1 cut(s)	1085
EcoO109I	RGGNCCY	1 cut(s)	1220
EcoO65I	GGTNACC	1 cut(s)	820
EcoRII	CCWGG	3 cut(s)	46, 1138, 1208
EcoT14I	CCWWGG	7 cut(s)	121, 147, 375, 687, 815, 1170, 1521
ErhI	CCWWGG	7 cut(s)	121, 147, 375, 687, 815, 1170, 1521
FalI	AAGNNNNNCTT	8 cut(s)	711, 743, 943, 975, 1040, 1072, 1349, 1381
FaqI	GGGAC	2 cut(s)	617, 1233
FauI	CCCGC	1 cut(s)	883
FbaI	TGATCA	1 cut(s)	906
FblI	GTMKAC	1 cut(s)	424
Fnu4HI	GCNGC	7 cut(s)	90, 279, 555, 627, 783, 1132, 1275
FokI	GGATG	7 cut(s)	130, 418, 459, 615, 857, 1242, 1464
Fsp4HI	GCNGC	7 cut(s)	90, 279, 555, 627, 783, 1132, 1275
FspBI	CTAG	4 cut(s)	63, 284, 776, 1226
GluI	GCNGC	7 cut(s)	90, 279, 555, 627, 783, 1132, 1275
GsaI	CCCAGC	2 cut(s)	9, 853
HaeIII	GGCC	2 cut(s)	92, 785
HapII	CCGG	2 cut(s)	96, 894
HincII	GTYRAC	2 cut(s)	1149, 1300
HindII	GTYRAC	2 cut(s)	1149, 1300
HindIII	AAGCTT	1 cut(s)	1049
HinfI	GANTC	3 cut(s)	152, 194, 546
HpaII	CCGG	2 cut(s)	96, 894
HphI	GGTGA	4 cut(s)	883, 973, 1303, 1408
Hpy166II	GTNNAC	6 cut(s)	53, 184, 425, 1149, 1192, 1300
Hpy188I	TCNGA	4 cut(s)	105, 214, 481, 740
Hpy188III	TCNNGA	2 cut(s)	160, 1180
Hpy8I	GTNNAC	6 cut(s)	53, 184, 425, 1149, 1192, 1300
Hpy99I	CGWCG	1 cut(s)	218
HpyAV	CCTTC	3 cut(s)	219, 889, 1035
HpyCH4III	ACNGT	4 cut(s)	168, 503, 1027, 1465
HpyCH4IV	ACGT	3 cut(s)	903, 911, 1194
HpyCH4V	TGCA	7 cut(s)	228, 290, 302, 629, 863, 1087, 1459
HpyF10VI	GCNNNNNNNGC	7 cut(s)	287, 635, 703, 733, 1084, 1205, 1280
HpyF3I	CTNAG	5 cut(s)	495, 723, 737, 1278, 1381
HpySE526I	ACGT	3 cut(s)	903, 911, 1194
Ksp22I	TGATCA	1 cut(s)	906
LmnI	GCTCC	4 cut(s)	25, 656, 925, 1083
Lsp1109I	GCAGC	4 cut(s)	265, 541, 613, 1261
LweI	GCATC	3 cut(s)	311, 396, 879
MaeI	CTAG	4 cut(s)	63, 284, 776, 1226
MaeII	ACGT	3 cut(s)	903, 911, 1194
MaeIII	GTNAC	2 cut(s)	139, 820
MboII	GAAGA	8 cut(s)	189, 255, 1300, 1324, 1363, 1366, 1369, 1463
MfeI	CAATTG	3 cut(s)	527, 540, 1446
MhlI	GDGCHC	3 cut(s)	511, 1179, 1242
MluCI	AATT	9 cut(s)	230, 527, 540, 1017, 1101, 1118, 1248, 1418, 1446
MlyI	GAGTC	2 cut(s)	146, 203
MmeI	TCCRAC	4 cut(s)	237, 634, 1018, 1078
MnlI	CCTC	8 cut(s)	614, 703, 734, 754, 1038, 1091, 1233, 1482
MroXI	GAANNNNTTC	2 cut(s)	167, 1052
MseI	TTAA	6 cut(s)	567, 732, 768, 993, 1116, 1503
MslI	CAYNNNNRTG	5 cut(s)	896, 902, 1088, 1340, 1520
MspA1I	CMGCKG	3 cut(s)	179, 974, 1131
MspCI	CTTAAG	1 cut(s)	731
MspI	CCGG	2 cut(s)	96, 894
MspR9I	CCNGG	3 cut(s)	48, 1140, 1210
MunI	CAATTG	3 cut(s)	527, 540, 1446
MvaI	CCWGG	3 cut(s)	48, 1140, 1210
MwoI	GCNNNNNNNGC	7 cut(s)	287, 635, 703, 733, 1084, 1205, 1280
NcoI	CCATGG	2 cut(s)	147, 1521
NlaIV	GGNNCC	3 cut(s)	373, 1221, 1239
NmeAIII	GCCGAG	1 cut(s)	607
NspI	RCATGY	2 cut(s)	81, 294
PaeI	GCATGC	1 cut(s)	294
PaqCI	CACCTGC	1 cut(s)	1078
PasI	CCCWGGG	1 cut(s)	1139
PciI	ACATGT	1 cut(s)	77
PdmI	GAANNNNTTC	2 cut(s)	167, 1052
PfeI	GAWTC	1 cut(s)	546
PflMI	CCANNNNNTGG	1 cut(s)	29
PkrI	GCNGC	7 cut(s)	91, 280, 556, 628, 784, 1133, 1276
PleI	GAGTC	2 cut(s)	146, 202
PpsI	GAGTC	2 cut(s)	146, 202
PpuMI	RGGWCCY	1 cut(s)	1220
PscI	ACATGT	1 cut(s)	77
PsiI	TTATAA	2 cut(s)	74, 644
Psp5II	RGGWCCY	1 cut(s)	1220
Psp6I	CCWGG	3 cut(s)	46, 1138, 1208
PspEI	GGTNACC	1 cut(s)	820
PspFI	CCCAGC	2 cut(s)	5, 849
PspGI	CCWGG	3 cut(s)	46, 1138, 1208
PspN4I	GGNNCC	3 cut(s)	373, 1221, 1239
PspPI	GGNCC	1 cut(s)	1220
PspPPI	RGGWCCY	1 cut(s)	1220
PstI	CTGCAG	1 cut(s)	631
PstNI	CAGNNNCTG	1 cut(s)	635
PvuII	CAGCTG	1 cut(s)	974
RsaI	GTAC	2 cut(s)	116, 500
RsaNI	GTAC	2 cut(s)	115, 499
RseI	CAYNNNNRTG	5 cut(s)	896, 902, 1088, 1340, 1520
SaqAI	TTAA	6 cut(s)	567, 732, 768, 993, 1116, 1503
SatI	GCNGC	7 cut(s)	90, 279, 555, 627, 783, 1132, 1275
Sau96I	GGNCC	1 cut(s)	1220
SchI	GAGTC	2 cut(s)	146, 203
ScrFI	CCNGG	3 cut(s)	48, 1140, 1210
SduI	GDGCHC	3 cut(s)	511, 1179, 1242
SfaNI	GCATC	3 cut(s)	311, 396, 879
SfcI	CTRYAG	1 cut(s)	627
SgrAI	CRCCGGYG	1 cut(s)	95
SinI	GGWCC	1 cut(s)	1220
SmiMI	CAYNNNNRTG	5 cut(s)	896, 902, 1088, 1340, 1520
SmlI	CTYRAG	1 cut(s)	731
SmoI	CTYRAG	1 cut(s)	731
SphI	GCATGC	1 cut(s)	294
Sse9I	AATT	9 cut(s)	230, 527, 540, 1017, 1101, 1118, 1248, 1418, 1446
SspMI	CTAG	4 cut(s)	63, 284, 776, 1226
StyD4I	CCNGG	3 cut(s)	46, 1138, 1208
StyI	CCWWGG	7 cut(s)	121, 147, 375, 687, 815, 1170, 1521
TaaI	ACNGT	4 cut(s)	168, 503, 1027, 1465
TaiI	ACGT	3 cut(s)	906, 914, 1197
TaqI	TCGA	5 cut(s)	26, 200, 234, 533, 693
TasI	AATT	9 cut(s)	230, 527, 540, 1017, 1101, 1118, 1248, 1418, 1446
TauI	GCSGC	3 cut(s)	92, 785, 1134
TfiI	GAWTC	1 cut(s)	546
Tru1I	TTAA	6 cut(s)	567, 732, 768, 993, 1116, 1503
Tru9I	TTAA	6 cut(s)	567, 732, 768, 993, 1116, 1503
TscAI	CASTG	6 cut(s)	793, 961, 1030, 1158, 1249, 1468
TseI	GCWGC	4 cut(s)	278, 554, 626, 1274
TspDTI	ATGAA	3 cut(s)	914, 1370, 1524
TspGWI	ACGGA	1 cut(s)	1285
TspRI	CASTG	6 cut(s)	793, 961, 1030, 1158, 1249, 1468
Van91I	CCANNNNNTGG	1 cut(s)	29
Vha464I	CTTAAG	1 cut(s)	731
VpaK11BI	GGWCC	1 cut(s)	1220
XagI	CCTNNNNNAGG	1 cut(s)	1085
XapI	RAATTY	3 cut(s)	230, 1118, 1248
XceI	RCATGY	2 cut(s)	81, 294
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1358
XmiI	GTMKAC	1 cut(s)	424
XmnI	GAANNNNTTC	2 cut(s)	167, 1052
XspI	CTAG	4 cut(s)	63, 284, 776, 1226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.