MD05G1114700.v1.1

drought-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0016711
Physical Location & Seq
Forward (+)
23375651 .. 23375899
249 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1114700.v1.1.491

Sequence Viewer

Length: 249 bp
ATGGGAGGTCCGATCATGCTGACTCAGTTCGCCACCGGTCTCGGCGTCTTGGCAAGCGCGATCTTCGTCAAATCGGTCATCGACCAGAAGCCTATGACCTACCCCTTCCCGCGCTGTCCCAGGTGCAACGGAACGGGTTGGGTCATCTGCTTCTGTTTACGCTGGTCTGATGGTGATGTCGGGTGTCGGAGCTGTGCCGGCTCGGGTCGTACATTTTGTAGCAGCTGTGGTAGGACGGGTACGAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

83

Amino Acids

8.68

Weight (kDa)

8.95

Isoelectric Point (pI)

34.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016711)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G43260
malus_domestica MD05G1114700.v1.1 MD13G1119200.v1.1 MD16G1119600.v1.1
prunus_persica Prupe.1G225600_v2.0.a1
pyrus_communis pycom13g10400 pycom16g10230
rosa_chinensis RchiOBHm_Chr4g0430231
rosa_multiflora Rmu_co8297869.1_g000001 Rmu_sc0030011.1_g000002
rosa_roxburghii Rroxscaffold_5G00372020
rosa_rugosa Rorug04G0241700
rosa_samantha Rh4BG304700
rosa_wichuraiana Rw4G025860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 59, 112
AciI CCGC 1 cut(s) 110
AcyI GRCGYC 1 cut(s) 45
AfaI GTAC 2 cut(s) 211, 241
AgeI ACCGGT 1 cut(s) 35
AjnI CCWGG 1 cut(s) 119
AluBI AGCT 2 cut(s) 192, 225
AluI AGCT 2 cut(s) 192, 225
Alw26I GTCTC 1 cut(s) 44
Ama87I CYCGRG 1 cut(s) 202
ApeKI GCWGC 1 cut(s) 222
AsiGI ACCGGT 1 cut(s) 35
AspLEI GCGC 2 cut(s) 59, 114
AspS9I GGNCC 1 cut(s) 8
AsuHPI GGTGA 1 cut(s) 185
AvaI CYCGRG 1 cut(s) 202
AvaII GGWCC 1 cut(s) 8
BbvI GCAGC 1 cut(s) 234
BccI CCATC 1 cut(s) 164
BciT130I CCWGG 1 cut(s) 121
BcoDI GTCTC 1 cut(s) 44
BisI GCNGC 1 cut(s) 223
BlsI GCNGC 1 cut(s) 224
Bme1390I CCNGG 1 cut(s) 121
Bme18I GGWCC 1 cut(s) 8
BmeT110I CYCGRG 1 cut(s) 202
BmgT120I GGNCC 1 cut(s) 8
BmrFI CCNGG 1 cut(s) 121
BsaHI GRCGYC 1 cut(s) 45
BsaI GGTCTC 1 cut(s) 44
BsaJI CCNNGG 1 cut(s) 119
BsaWI WCCGGW 1 cut(s) 35
Bse118I RCCGGY 2 cut(s) 35, 197
BseBI CCWGG 1 cut(s) 121
BseDI CCNNGG 1 cut(s) 119
BseMII CTCAG 1 cut(s) 38
BseXI GCAGC 1 cut(s) 234
Bsh1236I CGCG 2 cut(s) 59, 112
BshTI ACCGGT 1 cut(s) 35
BsiHKCI CYCGRG 1 cut(s) 202
BsiSI CCGG 2 cut(s) 36, 198
BslFI GGGAC 1 cut(s) 102
BsmAI GTCTC 1 cut(s) 44
BsmFI GGGAC 1 cut(s) 102
Bso31I GGTCTC 1 cut(s) 44
BsoBI CYCGRG 1 cut(s) 202
Bsp143I GATC 2 cut(s) 12, 60
BspACI CCGC 1 cut(s) 110
BspCNI CTCAG 1 cut(s) 37
BspFNI CGCG 2 cut(s) 59, 112
BspTNI GGTCTC 1 cut(s) 44
BsrFI RCCGGY 2 cut(s) 35, 197
BssAI RCCGGY 2 cut(s) 35, 197
BssECI CCNNGG 1 cut(s) 119
BssMI GATC 2 cut(s) 12, 60
BssNI GRCGYC 1 cut(s) 45
Bst2UI CCWGG 1 cut(s) 121
BstACI GRCGYC 1 cut(s) 45
BstC8I GCNNGC 2 cut(s) 55, 199
BstDEI CTNAG 1 cut(s) 24
BstFNI CGCG 2 cut(s) 59, 112
BstHHI GCGC 2 cut(s) 59, 114
BstKTI GATC 2 cut(s) 15, 63
BstMAI GTCTC 1 cut(s) 44
BstMBI GATC 2 cut(s) 12, 60
BstMWI GCNNNNNNNGC 1 cut(s) 198
BstNI CCWGG 1 cut(s) 121
BstSCI CCNGG 1 cut(s) 119
BstUI CGCG 2 cut(s) 59, 112
BstV1I GCAGC 1 cut(s) 234
Cac8I GCNNGC 2 cut(s) 55, 199
CfoI GCGC 2 cut(s) 59, 114
Cfr10I RCCGGY 2 cut(s) 35, 197
Cfr13I GGNCC 1 cut(s) 8
CseI GACGC 1 cut(s) 34
Csp6I GTAC 2 cut(s) 210, 240
CspAI ACCGGT 1 cut(s) 35
CviAII CATG 1 cut(s) 16
CviJI RGCY 4 cut(s) 91, 192, 201, 225
CviKI_1 RGCY 4 cut(s) 91, 192, 201, 225
CviQI GTAC 2 cut(s) 210, 240
DdeI CTNAG 1 cut(s) 24
DpnI GATC 2 cut(s) 14, 62
DpnII GATC 2 cut(s) 12, 60
Eco31I GGTCTC 1 cut(s) 44
Eco47I GGWCC 1 cut(s) 8
Eco88I CYCGRG 1 cut(s) 202
EcoRII CCWGG 1 cut(s) 119
FaeI CATG 1 cut(s) 19
FaiI YATR 2 cut(s) 17, 95
FaqI GGGAC 1 cut(s) 102
FatI CATG 1 cut(s) 15
FauI CCCGC 1 cut(s) 117
Fnu4HI GCNGC 1 cut(s) 223
Fsp4HI GCNGC 1 cut(s) 223
GlaI GCGC 2 cut(s) 58, 113
GluI GCNGC 1 cut(s) 223
HapII CCGG 2 cut(s) 36, 198
HgaI GACGC 1 cut(s) 34
HhaI GCGC 2 cut(s) 59, 114
Hin1I GRCGYC 1 cut(s) 45
Hin1II CATG 1 cut(s) 19
Hin6I GCGC 2 cut(s) 57, 112
HinP1I GCGC 2 cut(s) 57, 112
HinfI GANTC 1 cut(s) 22
HpaII CCGG 2 cut(s) 36, 198
HphI GGTGA 1 cut(s) 185
Hpy166II GTNNAC 1 cut(s) 158
Hpy188I TCNGA 3 cut(s) 12, 169, 189
Hpy8I GTNNAC 1 cut(s) 158
HpyAV CCTTC 1 cut(s) 115
HpyCH4V TGCA 1 cut(s) 126
HpyF10VI GCNNNNNNNGC 1 cut(s) 198
HpyF3I CTNAG 1 cut(s) 24
Hsp92I GRCGYC 1 cut(s) 45
Hsp92II CATG 1 cut(s) 19
HspAI GCGC 2 cut(s) 57, 112
KroI GCCGGC 1 cut(s) 197
KroNI GCCGGC 1 cut(s) 199
Kzo9I GATC 2 cut(s) 12, 60
LmnI GCTCC 1 cut(s) 189
LpnPI CCDG 6 cut(s) 49, 98, 106, 133, 148, 211
Lsp1109I GCAGC 1 cut(s) 234
MalI GATC 2 cut(s) 14, 62
MboI GATC 2 cut(s) 12, 60
MboII GAAGA 1 cut(s) 55
MlyI GAGTC 1 cut(s) 16
MmeI TCCRAC 1 cut(s) 167
MroNI GCCGGC 1 cut(s) 197
MspA1I CMGCKG 1 cut(s) 225
MspI CCGG 2 cut(s) 36, 198
MspR9I CCNGG 1 cut(s) 121
MvaI CCWGG 1 cut(s) 121
MvnI CGCG 2 cut(s) 59, 112
MwoI GCNNNNNNNGC 1 cut(s) 198
NaeI GCCGGC 1 cut(s) 199
NdeII GATC 2 cut(s) 12, 60
NgoMIV GCCGGC 1 cut(s) 197
NlaIII CATG 1 cut(s) 19
NmeAIII GCCGAG 1 cut(s) 21
PdiI GCCGGC 1 cut(s) 199
PinAI ACCGGT 1 cut(s) 35
PkrI GCNGC 1 cut(s) 224
PleI GAGTC 1 cut(s) 16
PpsI GAGTC 1 cut(s) 16
Psp6I CCWGG 1 cut(s) 119
PspGI CCWGG 1 cut(s) 119
PspPI GGNCC 1 cut(s) 8
PvuII CAGCTG 1 cut(s) 225
RsaI GTAC 2 cut(s) 211, 241
RsaNI GTAC 2 cut(s) 210, 240
SatI GCNGC 1 cut(s) 223
Sau3AI GATC 2 cut(s) 12, 60
Sau96I GGNCC 1 cut(s) 8
SchI GAGTC 1 cut(s) 16
ScrFI CCNGG 1 cut(s) 121
SetI ASST 5 cut(s) 10, 101, 125, 194, 227
SinI GGWCC 1 cut(s) 8
SsiI CCGC 1 cut(s) 110
StyD4I CCNGG 1 cut(s) 119
TaqI TCGA 1 cut(s) 81
TaqII GACCGA 1 cut(s) 64
TseI GCWGC 1 cut(s) 222
TspGWI ACGGA 1 cut(s) 144
VpaK11BI GGWCC 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.