Rroxscaffold_5G00372020

drought-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0016711
Physical Location & Seq
Forward (+)
53491011 .. 53491313
303 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00372020.1

Sequence Viewer

Length: 303 bp
ATGGGCGGTCCGATCGTGTTGACCCAGATAGCTCAGGGCCTCGGCGTCTTGGCCGGAGCGGCCATCGTCAAATCGCTGATGGACAAACCCATGGCCGGGCCGTTTCCGCGGTGCCCCAGTTGCAACGGAACGGGTCGGGTCAGCTGCCTCTGCAAGCGATGGTCGGATGGTGACGTCGGGTGCCGGACCTGCTCCGGGTCGGGTCGGACTTTCTGCAGCAGCTGTGGCGGATCGGGTACGGGTCGGCCTCTACCCGTTCAGCTCTCCGTGAGGCGTCAAAACCCGCCACCCGGTTCGGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

100

Amino Acids

10.08

Weight (kDa)

9.54

Isoelectric Point (pI)

49.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016711)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G43260
malus_domestica MD05G1114700.v1.1 MD13G1119200.v1.1 MD16G1119600.v1.1
prunus_persica Prupe.1G225600_v2.0.a1
pyrus_communis pycom13g10400 pycom16g10230
rosa_chinensis RchiOBHm_Chr4g0430231
rosa_multiflora Rmu_co8297869.1_g000001 Rmu_sc0030011.1_g000002
rosa_roxburghii Rroxscaffold_5G00372020
rosa_rugosa Rorug04G0241700
rosa_samantha Rh4BG304700
rosa_wichuraiana Rw4G025860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 177
Acc36I ACCTGC 1 cut(s) 197
AccB1I GGYRCC 2 cut(s) 111, 180
AccBSI CCGCTC 1 cut(s) 59
AccII CGCG 1 cut(s) 109
AciI CCGC 6 cut(s) 6, 59, 107, 109, 228, 284
AclWI GGATC 1 cut(s) 238
AcoI YGGCCR 3 cut(s) 51, 60, 93
AcyI GRCGYC 3 cut(s) 45, 174, 274
AfaI GTAC 1 cut(s) 238
AfiI CCNNNNNNNGG 5 cut(s) 95, 96, 195, 290, 296
AluBI AGCT 4 cut(s) 32, 144, 222, 262
AluI AGCT 4 cut(s) 32, 144, 222, 262
AlwI GGATC 1 cut(s) 238
AlwNI CAGNNNCTG 1 cut(s) 222
AoxI GGCC 6 cut(s) 37, 51, 60, 93, 98, 245
ApeKI GCWGC 3 cut(s) 144, 216, 219
AspS9I GGNCC 4 cut(s) 8, 37, 98, 186
AsuC2I CCSGG 3 cut(s) 97, 196, 291
AsuHPI GGTGA 1 cut(s) 182
AvaII GGWCC 2 cut(s) 8, 186
BaeGI GKGCMC 1 cut(s) 116
BanI GGYRCC 2 cut(s) 111, 180
BbvI GCAGC 3 cut(s) 131, 228, 231
BccI CCATC 4 cut(s) 71, 73, 153, 161
BceAI ACGGC 1 cut(s) 85
BcnI CCSGG 3 cut(s) 97, 196, 291
BfmI CTRYAG 1 cut(s) 214
BfuAI ACCTGC 1 cut(s) 197
BglI GCCNNNNNGGC 1 cut(s) 59
BisI GCNGC 4 cut(s) 60, 145, 217, 220
BlsI GCNGC 4 cut(s) 61, 146, 218, 221
Bme1390I CCNGG 3 cut(s) 97, 196, 291
Bme18I GGWCC 2 cut(s) 8, 186
BmgT120I GGNCC 4 cut(s) 8, 37, 98, 186
BmiI GGNNCC 2 cut(s) 113, 182
BmrFI CCNGG 3 cut(s) 97, 196, 291
BmrI ACTGGG 1 cut(s) 111
BmuI ACTGGG 1 cut(s) 111
Bpu10I CCTNAGC 1 cut(s) 33
BpuMI CCSGG 3 cut(s) 97, 196, 291
BsaHI GRCGYC 3 cut(s) 45, 174, 274
BsaJI CCNNGG 3 cut(s) 40, 90, 107
Bsc4I CCNNNNNNNGG 5 cut(s) 95, 96, 195, 290, 296
Bse1I ACTGG 1 cut(s) 117
BseDI CCNNGG 3 cut(s) 40, 90, 107
BseGI GGATG 1 cut(s) 172
BseLI CCNNNNNNNGG 5 cut(s) 95, 96, 195, 290, 296
BseMII CTCAG 1 cut(s) 47
BseNI ACTGG 1 cut(s) 117
BseSI GKGCMC 1 cut(s) 116
BseXI GCAGC 3 cut(s) 131, 228, 231
Bsh1236I CGCG 1 cut(s) 109
Bsh1285I CGRYCG 1 cut(s) 15
BshFI GGCC 6 cut(s) 39, 53, 62, 95, 100, 247
BshNI GGYRCC 2 cut(s) 111, 180
BsiEI CGRYCG 1 cut(s) 15
BsiSI CCGG 5 cut(s) 54, 96, 184, 195, 291
BslI CCNNNNNNNGG 5 cut(s) 95, 96, 195, 290, 296
BsnI GGCC 6 cut(s) 39, 53, 62, 95, 100, 247
Bsp1286I GDGCHC 1 cut(s) 116
Bsp143I GATC 2 cut(s) 12, 230
Bsp19I CCATGG 1 cut(s) 90
BspACI CCGC 6 cut(s) 6, 59, 107, 109, 228, 284
BspANI GGCC 6 cut(s) 39, 53, 62, 95, 100, 247
BspCNI CTCAG 1 cut(s) 46
BspFNI CGCG 1 cut(s) 109
BspLI GGNNCC 2 cut(s) 113, 182
BspMAI CTGCAG 1 cut(s) 218
BspMI ACCTGC 1 cut(s) 197
BspPI GGATC 1 cut(s) 238
BspT107I GGYRCC 2 cut(s) 111, 180
BsrBI CCGCTC 1 cut(s) 59
BsrI ACTGG 1 cut(s) 117
BssECI CCNNGG 3 cut(s) 40, 90, 107
BssMI GATC 2 cut(s) 12, 230
BssNI GRCGYC 3 cut(s) 45, 174, 274
BssT1I CCWWGG 1 cut(s) 90
BstACI GRCGYC 3 cut(s) 45, 174, 274
BstC8I GCNNGC 1 cut(s) 155
BstDEI CTNAG 1 cut(s) 33
BstDSI CCRYGG 2 cut(s) 90, 107
BstF5I GGATG 1 cut(s) 172
BstFNI CGCG 1 cut(s) 109
BstKTI GATC 2 cut(s) 15, 233
BstMBI GATC 2 cut(s) 12, 230
BstMCI CGRYCG 1 cut(s) 15
BstMWI GCNNNNNNNGC 6 cut(s) 59, 106, 120, 150, 189, 225
BstSCI CCNGG 3 cut(s) 95, 194, 289
BstSFI CTRYAG 1 cut(s) 214
BstSLI GKGCMC 1 cut(s) 116
BstUI CGCG 1 cut(s) 109
BstV1I GCAGC 3 cut(s) 131, 228, 231
BsuRI GGCC 6 cut(s) 39, 53, 62, 95, 100, 247
BtgI CCRYGG 2 cut(s) 90, 107
BtgZI GCGATG 1 cut(s) 172
BtsCI GGATG 1 cut(s) 172
BveI ACCTGC 1 cut(s) 197
Cac8I GCNNGC 1 cut(s) 155
CaiI CAGNNNCTG 1 cut(s) 222
Cfr13I GGNCC 4 cut(s) 8, 37, 98, 186
Cfr42I CCGCGG 1 cut(s) 110
CpoI CGGWCCG 1 cut(s) 8
CseI GACGC 2 cut(s) 34, 263
Csp6I GTAC 1 cut(s) 237
CspI CGGWCCG 1 cut(s) 8
CviAII CATG 1 cut(s) 91
CviQI GTAC 1 cut(s) 237
DdeI CTNAG 1 cut(s) 33
DpnI GATC 2 cut(s) 14, 232
DpnII GATC 2 cut(s) 12, 230
EaeI YGGCCR 3 cut(s) 51, 60, 93
EciI GGCGGA 1 cut(s) 243
Eco130I CCWWGG 1 cut(s) 90
Eco47I GGWCC 2 cut(s) 8, 186
EcoO109I RGGNCCY 1 cut(s) 37
EcoT14I CCWWGG 1 cut(s) 90
ErhI CCWWGG 1 cut(s) 90
FaeI CATG 1 cut(s) 94
FaiI YATR 1 cut(s) 92
FatI CATG 1 cut(s) 90
FauI CCCGC 1 cut(s) 291
Fnu4HI GCNGC 4 cut(s) 60, 145, 217, 220
FokI GGATG 1 cut(s) 179
Fsp4HI GCNGC 4 cut(s) 60, 145, 217, 220
GluI GCNGC 4 cut(s) 60, 145, 217, 220
HaeIII GGCC 6 cut(s) 39, 53, 62, 95, 100, 247
HapII CCGG 5 cut(s) 54, 96, 184, 195, 291
HgaI GACGC 2 cut(s) 34, 263
Hin1I GRCGYC 3 cut(s) 45, 174, 274
Hin1II CATG 1 cut(s) 94
HincII GTYRAC 1 cut(s) 21
HindII GTYRAC 1 cut(s) 21
HpaII CCGG 5 cut(s) 54, 96, 184, 195, 291
HphI GGTGA 1 cut(s) 182
Hpy166II GTNNAC 1 cut(s) 21
Hpy188I TCNGA 3 cut(s) 12, 166, 207
Hpy8I GTNNAC 1 cut(s) 21
Hpy99I CGWCG 1 cut(s) 179
HpyCH4IV ACGT 1 cut(s) 174
HpyCH4V TGCA 3 cut(s) 123, 153, 216
HpyF10VI GCNNNNNNNGC 6 cut(s) 59, 106, 120, 150, 189, 225
HpyF3I CTNAG 1 cut(s) 33
HpySE526I ACGT 1 cut(s) 174
Hsp92I GRCGYC 3 cut(s) 45, 174, 274
Hsp92II CATG 1 cut(s) 94
KspI CCGCGG 1 cut(s) 110
Kzo9I GATC 2 cut(s) 12, 230
LmnI GCTCC 2 cut(s) 56, 197
LpnPI CCDG 8 cut(s) 20, 38, 67, 109, 130, 197, 202, 208
Lsp1109I GCAGC 3 cut(s) 131, 228, 231
MaeII ACGT 1 cut(s) 174
MaeIII GTNAC 1 cut(s) 170
MalI GATC 2 cut(s) 14, 232
MbiI CCGCTC 1 cut(s) 59
MboI GATC 2 cut(s) 12, 230
MhlI GDGCHC 1 cut(s) 116
MmeI TCCRAC 2 cut(s) 144, 185
MnlI CCTC 4 cut(s) 50, 158, 258, 264
MspA1I CMGCKG 3 cut(s) 109, 144, 222
MspI CCGG 5 cut(s) 54, 96, 184, 195, 291
MspR9I CCNGG 3 cut(s) 97, 196, 291
MvnI CGCG 1 cut(s) 109
MwoI GCNNNNNNNGC 6 cut(s) 59, 106, 120, 150, 189, 225
NciI CCSGG 3 cut(s) 97, 196, 291
NcoI CCATGG 1 cut(s) 90
NdeII GATC 2 cut(s) 12, 230
NlaIII CATG 1 cut(s) 94
NlaIV GGNNCC 2 cut(s) 113, 182
NmeAIII GCCGAG 1 cut(s) 21
NmuCI GTSAC 1 cut(s) 170
PkrI GCNGC 4 cut(s) 61, 146, 218, 221
Ple19I CGATCG 1 cut(s) 15
PspN4I GGNNCC 2 cut(s) 113, 182
PspPI GGNCC 4 cut(s) 8, 37, 98, 186
PstI CTGCAG 1 cut(s) 218
PstNI CAGNNNCTG 1 cut(s) 222
PvuI CGATCG 1 cut(s) 15
PvuII CAGCTG 2 cut(s) 144, 222
RsaI GTAC 1 cut(s) 238
RsaNI GTAC 1 cut(s) 237
Rsr2I CGGWCCG 1 cut(s) 8
RsrII CGGWCCG 1 cut(s) 8
SacII CCGCGG 1 cut(s) 110
SatI GCNGC 4 cut(s) 60, 145, 217, 220
Sau3AI GATC 2 cut(s) 12, 230
Sau96I GGNCC 4 cut(s) 8, 37, 98, 186
ScrFI CCNGG 3 cut(s) 97, 196, 291
SduI GDGCHC 1 cut(s) 116
SetI ASST 6 cut(s) 34, 146, 177, 191, 224, 264
SfcI CTRYAG 1 cut(s) 214
SfiI GGCCNNNNNGGCC 1 cut(s) 59
Sfr303I CCGCGG 1 cut(s) 110
SgrBI CCGCGG 1 cut(s) 110
SinI GGWCC 2 cut(s) 8, 186
SsiI CCGC 6 cut(s) 6, 59, 107, 109, 228, 284
StyD4I CCNGG 3 cut(s) 95, 194, 289
StyI CCWWGG 1 cut(s) 90
TaiI ACGT 1 cut(s) 177
TauI GCSGC 1 cut(s) 62
TseFI GTSAC 1 cut(s) 170
TseI GCWGC 3 cut(s) 144, 216, 219
Tsp45I GTSAC 1 cut(s) 170
TspGWI ACGGA 2 cut(s) 141, 256
VpaK11BI GGWCC 2 cut(s) 8, 186
ZraI GACGTC 1 cut(s) 175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.