Prupe.1G225600_v2.0.a1

drought-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0016711
Physical Location & Seq
Forward (+)
23906600 .. 23907226
627 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G225600.1

Sequence Viewer

Length: 297 bp
ATGGGTGGTCCGATTGTGTTGACCCAGCTGGCTACGGGTCTCGGCGTATTGGCCGGGGCAGTCCTCGTCAAATCGGTCATGGACCAGAAGCCCATGGCCGGCCCGTTTCCCAGGTGCCCCAGTTGCAATGGCACGGGTCGGGTCTCCTGCTTCTGCTCGCGCTGGTCCGATGGCGATGTCGGGTGCCGGAGCTGTGCCGGGTCGGGTCGCACGTTCTGCAGAAGCTGTGGCGGTTCTGGTACTGGTCGACCCCTTCCGGTTCAAATCTCCGTACGGCCTCCCACCCCACCCTCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

99

Amino Acids

9.91

Weight (kDa)

9.37

Isoelectric Point (pI)

54.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016711)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G43260
malus_domestica MD05G1114700.v1.1 MD13G1119200.v1.1 MD16G1119600.v1.1
prunus_persica Prupe.1G225600_v2.0.a1
pyrus_communis pycom13g10400 pycom16g10230
rosa_chinensis RchiOBHm_Chr4g0430231
rosa_multiflora Rmu_co8297869.1_g000001 Rmu_sc0030011.1_g000002
rosa_roxburghii Rroxscaffold_5G00372020
rosa_rugosa Rorug04G0241700
rosa_samantha Rh4BG304700
rosa_wichuraiana Rw4G025860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 114, 183
AccI GTMKAC 1 cut(s) 247
AccII CGCG 1 cut(s) 160
AciI CCGC 1 cut(s) 231
AcoI YGGCCR 2 cut(s) 51, 96
AfaI GTAC 2 cut(s) 241, 273
AfiI CCNNNNNNNGG 1 cut(s) 98
AgsI TTSAA 1 cut(s) 263
AjnI CCWGG 1 cut(s) 110
AluBI AGCT 3 cut(s) 28, 192, 225
AluI AGCT 3 cut(s) 28, 192, 225
Alw26I GTCTC 2 cut(s) 44, 148
AlwNI CAGNNNCTG 1 cut(s) 225
AoxI GGCC 4 cut(s) 51, 96, 100, 275
AspLEI GCGC 1 cut(s) 162
AspS9I GGNCC 4 cut(s) 8, 82, 101, 165
AsuC2I CCSGG 2 cut(s) 55, 199
AvaII GGWCC 3 cut(s) 8, 82, 165
BaeGI GKGCMC 1 cut(s) 119
BanI GGYRCC 2 cut(s) 114, 183
BccI CCATC 1 cut(s) 164
BceAI ACGGC 1 cut(s) 290
BciT130I CCWGG 1 cut(s) 112
BcnI CCSGG 2 cut(s) 55, 199
BcoDI GTCTC 2 cut(s) 44, 148
BfmI CTRYAG 1 cut(s) 217
Bme1390I CCNGG 3 cut(s) 55, 112, 199
Bme18I GGWCC 3 cut(s) 8, 82, 165
BmgT120I GGNCC 4 cut(s) 8, 82, 101, 165
BmiI GGNNCC 2 cut(s) 116, 185
BmrFI CCNGG 3 cut(s) 55, 112, 199
BmrI ACTGGG 1 cut(s) 114
BmuI ACTGGG 1 cut(s) 114
BpuMI CCSGG 2 cut(s) 55, 199
BsaI GGTCTC 2 cut(s) 44, 148
BsaJI CCNNGG 3 cut(s) 54, 93, 110
BsaWI WCCGGW 1 cut(s) 256
Bsc4I CCNNNNNNNGG 1 cut(s) 98
Bse118I RCCGGY 1 cut(s) 98
Bse1I ACTGG 2 cut(s) 120, 247
Bse3DI GCAATG 1 cut(s) 133
BseBI CCWGG 1 cut(s) 112
BseDI CCNNGG 3 cut(s) 54, 93, 110
BseLI CCNNNNNNNGG 1 cut(s) 98
BseMI GCAATG 1 cut(s) 133
BseNI ACTGG 2 cut(s) 120, 247
BseSI GKGCMC 1 cut(s) 119
BseYI CCCAGC 1 cut(s) 24
Bsh1236I CGCG 1 cut(s) 160
BshFI GGCC 4 cut(s) 53, 98, 102, 277
BshNI GGYRCC 2 cut(s) 114, 183
BsiSI CCGG 5 cut(s) 54, 99, 187, 198, 257
BsiWI CGTACG 1 cut(s) 271
BslI CCNNNNNNNGG 1 cut(s) 98
BsmAI GTCTC 2 cut(s) 44, 148
BsnI GGCC 4 cut(s) 53, 98, 102, 277
Bso31I GGTCTC 2 cut(s) 44, 148
Bsp1286I GDGCHC 1 cut(s) 119
Bsp19I CCATGG 1 cut(s) 93
BspACI CCGC 1 cut(s) 231
BspANI GGCC 4 cut(s) 53, 98, 102, 277
BspFNI CGCG 1 cut(s) 160
BspLI GGNNCC 2 cut(s) 116, 185
BspMAI CTGCAG 1 cut(s) 221
BspT107I GGYRCC 2 cut(s) 114, 183
BspTNI GGTCTC 2 cut(s) 44, 148
BsrDI GCAATG 1 cut(s) 133
BsrFI RCCGGY 1 cut(s) 98
BsrI ACTGG 2 cut(s) 120, 247
BssAI RCCGGY 1 cut(s) 98
BssECI CCNNGG 3 cut(s) 54, 93, 110
BssT1I CCWWGG 1 cut(s) 93
Bst2UI CCWGG 1 cut(s) 112
BstAPI GCANNNNNTGC 1 cut(s) 216
BstC8I GCNNGC 3 cut(s) 30, 100, 158
BstDSI CCRYGG 1 cut(s) 93
BstFNI CGCG 1 cut(s) 160
BstHHI GCGC 1 cut(s) 162
BstMAI GTCTC 2 cut(s) 44, 148
BstMWI GCNNNNNNNGC 2 cut(s) 123, 216
BstNI CCWGG 1 cut(s) 112
BstSCI CCNGG 3 cut(s) 53, 110, 197
BstSFI CTRYAG 1 cut(s) 217
BstSLI GKGCMC 1 cut(s) 119
BstUI CGCG 1 cut(s) 160
BsuRI GGCC 4 cut(s) 53, 98, 102, 277
BtgI CCRYGG 1 cut(s) 93
BtgZI GCGATG 1 cut(s) 189
Cac8I GCNNGC 3 cut(s) 30, 100, 158
CaiI CAGNNNCTG 1 cut(s) 225
CfoI GCGC 1 cut(s) 162
Cfr10I RCCGGY 1 cut(s) 98
Cfr13I GGNCC 4 cut(s) 8, 82, 101, 165
Csp6I GTAC 2 cut(s) 240, 272
CviAII CATG 2 cut(s) 79, 94
CviJI RGCY 9 cut(s) 28, 32, 53, 91, 98, 102, 192, 225, 277
CviKI_1 RGCY 9 cut(s) 28, 32, 53, 91, 98, 102, 192, 225, 277
CviQI GTAC 2 cut(s) 240, 272
EaeI YGGCCR 2 cut(s) 51, 96
Eco130I CCWWGG 1 cut(s) 93
Eco31I GGTCTC 2 cut(s) 44, 148
Eco47I GGWCC 3 cut(s) 8, 82, 165
EcoRII CCWGG 1 cut(s) 110
EcoT14I CCWWGG 1 cut(s) 93
ErhI CCWWGG 1 cut(s) 93
FaeI CATG 2 cut(s) 82, 97
FaiI YATR 2 cut(s) 80, 95
FatI CATG 2 cut(s) 78, 93
FblI GTMKAC 1 cut(s) 247
FseI GGCCGGCC 1 cut(s) 102
GlaI GCGC 1 cut(s) 161
GsaI CCCAGC 1 cut(s) 28
HaeIII GGCC 4 cut(s) 53, 98, 102, 277
HapII CCGG 5 cut(s) 54, 99, 187, 198, 257
HhaI GCGC 1 cut(s) 162
Hin1II CATG 2 cut(s) 82, 97
Hin6I GCGC 1 cut(s) 160
HinP1I GCGC 1 cut(s) 160
HincII GTYRAC 2 cut(s) 21, 248
HindII GTYRAC 2 cut(s) 21, 248
HpaII CCGG 5 cut(s) 54, 99, 187, 198, 257
Hpy166II GTNNAC 2 cut(s) 21, 248
Hpy188I TCNGA 2 cut(s) 12, 169
Hpy8I GTNNAC 2 cut(s) 21, 248
HpyAV CCTTC 1 cut(s) 263
HpyCH4IV ACGT 1 cut(s) 212
HpyCH4V TGCA 2 cut(s) 126, 219
HpyF10VI GCNNNNNNNGC 2 cut(s) 123, 216
HpySE526I ACGT 1 cut(s) 212
Hsp92II CATG 2 cut(s) 82, 97
HspAI GCGC 1 cut(s) 160
KroI GCCGGC 1 cut(s) 98
KroNI GCCGGC 1 cut(s) 100
LmnI GCTCC 1 cut(s) 189
MaeII ACGT 1 cut(s) 212
MhlI GDGCHC 1 cut(s) 119
MnlI CCTC 2 cut(s) 74, 288
MroNI GCCGGC 1 cut(s) 98
MspA1I CMGCKG 1 cut(s) 28
MspI CCGG 5 cut(s) 54, 99, 187, 198, 257
MspR9I CCNGG 3 cut(s) 55, 112, 199
MvaI CCWGG 1 cut(s) 112
MvnI CGCG 1 cut(s) 160
MwoI GCNNNNNNNGC 2 cut(s) 123, 216
NaeI GCCGGC 1 cut(s) 100
NciI CCSGG 2 cut(s) 55, 199
NcoI CCATGG 1 cut(s) 93
NgoMIV GCCGGC 1 cut(s) 98
NlaIII CATG 2 cut(s) 82, 97
NlaIV GGNNCC 2 cut(s) 116, 185
NmeAIII GCCGAG 1 cut(s) 21
PcsI WCGNNNNNNNCGW 1 cut(s) 209
PdiI GCCGGC 1 cut(s) 100
Pfl23II CGTACG 1 cut(s) 271
Psp6I CCWGG 1 cut(s) 110
PspFI CCCAGC 1 cut(s) 24
PspGI CCWGG 1 cut(s) 110
PspLI CGTACG 1 cut(s) 271
PspN4I GGNNCC 2 cut(s) 116, 185
PspPI GGNCC 4 cut(s) 8, 82, 101, 165
PstI CTGCAG 1 cut(s) 221
PstNI CAGNNNCTG 1 cut(s) 225
PvuII CAGCTG 1 cut(s) 28
RigI GGCCGGCC 1 cut(s) 102
RsaI GTAC 2 cut(s) 241, 273
RsaNI GTAC 2 cut(s) 240, 272
SalI GTCGAC 1 cut(s) 246
Sau96I GGNCC 4 cut(s) 8, 82, 101, 165
ScrFI CCNGG 3 cut(s) 55, 112, 199
SduI GDGCHC 1 cut(s) 119
SetI ASST 5 cut(s) 30, 116, 194, 215, 227
SfcI CTRYAG 1 cut(s) 217
SinI GGWCC 3 cut(s) 8, 82, 165
SsiI CCGC 1 cut(s) 231
StyD4I CCNGG 3 cut(s) 53, 110, 197
StyI CCWWGG 1 cut(s) 93
TaiI ACGT 1 cut(s) 215
TaqI TCGA 1 cut(s) 247
TaqII GACCGA 1 cut(s) 64
TspGWI ACGGA 1 cut(s) 259
VpaK11BI GGWCC 3 cut(s) 8, 82, 165
XmiI GTMKAC 1 cut(s) 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.