Rmu_co8297869.1_g000001

drought-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8297869.1
OG0016711
Physical Location & Seq
Forward (+)
1 .. 548
548 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8297869.1_g000001.1.cds

Sequence Viewer

Length: 276 bp
atagctcagggcctcggcgtcttggccggagcggccatcgtcaaatcgctgatggacaagcccatggccggccagtttccgcggtgccccagttgcaacggaacgggtcgggtcagctgcctctgcaagcgatggtcggatggtgatgtcgggtgccggacctgttccgggtcgggtcggactttctgcagcagctgtggcgggtcgggtacgggtcggcctctacccgttcagctctccgtaaggcgtcaaaacccgccacccggttcgggctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

91

Amino Acids

9.21

Weight (kDa)

9.54

Isoelectric Point (pI)

51.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016711)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G43260
malus_domestica MD05G1114700.v1.1 MD13G1119200.v1.1 MD16G1119600.v1.1
prunus_persica Prupe.1G225600_v2.0.a1
pyrus_communis pycom13g10400 pycom16g10230
rosa_chinensis RchiOBHm_Chr4g0430231
rosa_multiflora Rmu_co8297869.1_g000001 Rmu_sc0030011.1_g000002
rosa_roxburghii Rroxscaffold_5G00372020
rosa_rugosa Rorug04G0241700
rosa_samantha Rh4BG304700
rosa_wichuraiana Rw4G025860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 84, 153
AccBSI CCGCTC 1 cut(s) 32
AccII CGCG 1 cut(s) 82
AciI CCGC 5 cut(s) 32, 80, 82, 201, 257
AcoI YGGCCR 4 cut(s) 24, 33, 66, 70
AcyI GRCGYC 2 cut(s) 18, 247
AfaI GTAC 1 cut(s) 211
AfiI CCNNNNNNNGG 4 cut(s) 68, 168, 263, 269
AluBI AGCT 4 cut(s) 5, 117, 195, 235
AluI AGCT 4 cut(s) 5, 117, 195, 235
AlwNI CAGNNNCTG 1 cut(s) 195
AoxI GGCC 6 cut(s) 10, 24, 33, 66, 70, 218
ApeKI GCWGC 3 cut(s) 117, 189, 192
AspS9I GGNCC 2 cut(s) 10, 159
AsuC2I CCSGG 2 cut(s) 169, 264
AsuHPI GGTGA 1 cut(s) 155
AvaII GGWCC 1 cut(s) 159
BaeGI GKGCMC 1 cut(s) 89
BanI GGYRCC 2 cut(s) 84, 153
BbvI GCAGC 3 cut(s) 104, 201, 204
BccI CCATC 4 cut(s) 44, 46, 126, 134
BcnI CCSGG 2 cut(s) 169, 264
BfmI CTRYAG 1 cut(s) 187
BglI GCCNNNNNGGC 1 cut(s) 32
BisI GCNGC 4 cut(s) 33, 118, 190, 193
BlsI GCNGC 4 cut(s) 34, 119, 191, 194
Bme1390I CCNGG 2 cut(s) 169, 264
Bme18I GGWCC 1 cut(s) 159
BmgT120I GGNCC 2 cut(s) 10, 159
BmiI GGNNCC 2 cut(s) 86, 155
BmrFI CCNGG 2 cut(s) 169, 264
BmrI ACTGGG 1 cut(s) 84
BmuI ACTGGG 1 cut(s) 84
Bpu10I CCTNAGC 1 cut(s) 6
BpuMI CCSGG 2 cut(s) 169, 264
BsaHI GRCGYC 2 cut(s) 18, 247
BsaJI CCNNGG 3 cut(s) 13, 63, 80
Bsc4I CCNNNNNNNGG 4 cut(s) 68, 168, 263, 269
Bse118I RCCGGY 1 cut(s) 68
Bse1I ACTGG 2 cut(s) 73, 90
BseDI CCNNGG 3 cut(s) 13, 63, 80
BseGI GGATG 1 cut(s) 145
BseLI CCNNNNNNNGG 4 cut(s) 68, 168, 263, 269
BseMII CTCAG 1 cut(s) 20
BseNI ACTGG 2 cut(s) 73, 90
BseSI GKGCMC 1 cut(s) 89
BseXI GCAGC 3 cut(s) 104, 201, 204
Bsh1236I CGCG 1 cut(s) 82
BshFI GGCC 6 cut(s) 12, 26, 35, 68, 72, 220
BshNI GGYRCC 2 cut(s) 84, 153
BsiSI CCGG 5 cut(s) 27, 69, 157, 168, 264
BslI CCNNNNNNNGG 4 cut(s) 68, 168, 263, 269
BsnI GGCC 6 cut(s) 12, 26, 35, 68, 72, 220
Bsp1286I GDGCHC 1 cut(s) 89
Bsp19I CCATGG 1 cut(s) 63
BspACI CCGC 5 cut(s) 32, 80, 82, 201, 257
BspANI GGCC 6 cut(s) 12, 26, 35, 68, 72, 220
BspCNI CTCAG 1 cut(s) 19
BspFNI CGCG 1 cut(s) 82
BspLI GGNNCC 2 cut(s) 86, 155
BspMAI CTGCAG 1 cut(s) 191
BspT107I GGYRCC 2 cut(s) 84, 153
BsrBI CCGCTC 1 cut(s) 32
BsrFI RCCGGY 1 cut(s) 68
BsrI ACTGG 2 cut(s) 73, 90
BssAI RCCGGY 1 cut(s) 68
BssECI CCNNGG 3 cut(s) 13, 63, 80
BssNI GRCGYC 2 cut(s) 18, 247
BssT1I CCWWGG 1 cut(s) 63
BstACI GRCGYC 2 cut(s) 18, 247
BstC8I GCNNGC 2 cut(s) 70, 128
BstDEI CTNAG 1 cut(s) 6
BstDSI CCRYGG 2 cut(s) 63, 80
BstF5I GGATG 1 cut(s) 145
BstFNI CGCG 1 cut(s) 82
BstMWI GCNNNNNNNGC 4 cut(s) 32, 93, 123, 198
BstSCI CCNGG 2 cut(s) 167, 262
BstSFI CTRYAG 1 cut(s) 187
BstSLI GKGCMC 1 cut(s) 89
BstUI CGCG 1 cut(s) 82
BstV1I GCAGC 3 cut(s) 104, 201, 204
BsuRI GGCC 6 cut(s) 12, 26, 35, 68, 72, 220
BtgI CCRYGG 2 cut(s) 63, 80
BtgZI GCGATG 1 cut(s) 145
BtsCI GGATG 1 cut(s) 145
Cac8I GCNNGC 2 cut(s) 70, 128
CaiI CAGNNNCTG 1 cut(s) 195
Cfr10I RCCGGY 1 cut(s) 68
Cfr13I GGNCC 2 cut(s) 10, 159
Cfr42I CCGCGG 1 cut(s) 83
CseI GACGC 2 cut(s) 7, 236
Csp6I GTAC 1 cut(s) 210
CviAII CATG 1 cut(s) 64
CviQI GTAC 1 cut(s) 210
DdeI CTNAG 1 cut(s) 6
EaeI YGGCCR 4 cut(s) 24, 33, 66, 70
Eco130I CCWWGG 1 cut(s) 63
Eco47I GGWCC 1 cut(s) 159
EcoO109I RGGNCCY 1 cut(s) 10
EcoT14I CCWWGG 1 cut(s) 63
ErhI CCWWGG 1 cut(s) 63
FaeI CATG 1 cut(s) 67
FaiI YATR 1 cut(s) 65
FatI CATG 1 cut(s) 63
FauI CCCGC 2 cut(s) 194, 264
Fnu4HI GCNGC 4 cut(s) 33, 118, 190, 193
FokI GGATG 1 cut(s) 152
FseI GGCCGGCC 1 cut(s) 72
Fsp4HI GCNGC 4 cut(s) 33, 118, 190, 193
GluI GCNGC 4 cut(s) 33, 118, 190, 193
HaeIII GGCC 6 cut(s) 12, 26, 35, 68, 72, 220
HapII CCGG 5 cut(s) 27, 69, 157, 168, 264
HgaI GACGC 2 cut(s) 7, 236
Hin1I GRCGYC 2 cut(s) 18, 247
Hin1II CATG 1 cut(s) 67
HpaII CCGG 5 cut(s) 27, 69, 157, 168, 264
HphI GGTGA 1 cut(s) 155
Hpy188I TCNGA 2 cut(s) 139, 180
HpyCH4V TGCA 3 cut(s) 96, 126, 189
HpyF10VI GCNNNNNNNGC 4 cut(s) 32, 93, 123, 198
HpyF3I CTNAG 1 cut(s) 6
Hsp92I GRCGYC 2 cut(s) 18, 247
Hsp92II CATG 1 cut(s) 67
KroI GCCGGC 1 cut(s) 68
KroNI GCCGGC 1 cut(s) 70
KspI CCGCGG 1 cut(s) 83
LmnI GCTCC 1 cut(s) 29
LpnPI CCDG 7 cut(s) 40, 82, 86, 103, 170, 175, 181
Lsp1109I GCAGC 3 cut(s) 104, 201, 204
MbiI CCGCTC 1 cut(s) 32
MhlI GDGCHC 1 cut(s) 89
MmeI TCCRAC 2 cut(s) 117, 158
MnlI CCTC 3 cut(s) 23, 131, 231
MroNI GCCGGC 1 cut(s) 68
MspA1I CMGCKG 3 cut(s) 82, 117, 195
MspI CCGG 5 cut(s) 27, 69, 157, 168, 264
MspR9I CCNGG 2 cut(s) 169, 264
MvnI CGCG 1 cut(s) 82
MwoI GCNNNNNNNGC 4 cut(s) 32, 93, 123, 198
NaeI GCCGGC 1 cut(s) 70
NciI CCSGG 2 cut(s) 169, 264
NcoI CCATGG 1 cut(s) 63
NgoMIV GCCGGC 1 cut(s) 68
NlaIII CATG 1 cut(s) 67
NlaIV GGNNCC 2 cut(s) 86, 155
PdiI GCCGGC 1 cut(s) 70
PkrI GCNGC 4 cut(s) 34, 119, 191, 194
PspN4I GGNNCC 2 cut(s) 86, 155
PspPI GGNCC 2 cut(s) 10, 159
PstI CTGCAG 1 cut(s) 191
PstNI CAGNNNCTG 1 cut(s) 195
PvuII CAGCTG 2 cut(s) 117, 195
RigI GGCCGGCC 1 cut(s) 72
RsaI GTAC 1 cut(s) 211
RsaNI GTAC 1 cut(s) 210
SacII CCGCGG 1 cut(s) 83
SatI GCNGC 4 cut(s) 33, 118, 190, 193
Sau96I GGNCC 2 cut(s) 10, 159
ScrFI CCNGG 2 cut(s) 169, 264
SduI GDGCHC 1 cut(s) 89
SetI ASST 5 cut(s) 7, 119, 164, 197, 237
SfcI CTRYAG 1 cut(s) 187
SfiI GGCCNNNNNGGCC 1 cut(s) 32
Sfr303I CCGCGG 1 cut(s) 83
SgrBI CCGCGG 1 cut(s) 83
SinI GGWCC 1 cut(s) 159
SsiI CCGC 5 cut(s) 32, 80, 82, 201, 257
StyD4I CCNGG 2 cut(s) 167, 262
StyI CCWWGG 1 cut(s) 63
TauI GCSGC 1 cut(s) 35
TseI GCWGC 3 cut(s) 117, 189, 192
TspGWI ACGGA 2 cut(s) 114, 229
VpaK11BI GGWCC 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.