MD13G1119200.v1.1

drought-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0016711
Physical Location & Seq
Reverse (-)
8737298 .. 8737594
297 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1119200.v1.1.491

Sequence Viewer

Length: 297 bp
ATGGGAGGTCCGATCGTGCTGACTCAGCTCGCCACCGGTCTCGGCGTCTTGGCGGGCGCGGTCTTCGTCAAATCGGTCATGGACCAGAAGCCCATGGCCGGCCCCTTCCCGCGCTGTCCCAGGTGCAACGGAACGGGTCGGGTCACCTGCTTCTGCTCGCGCTGGTCCGATGGTGATGTCGGGTGCCGGAGCTGTGCCGGCTCGGGTCGTACGTTTTGTAGCAGCTGTGGTGGGTCGGGTACGAGTCGGCCGCTTCCGGTTCAGATCTCCGTACAGCGCCCCAACCCTCCGTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

99

Amino Acids

10.03

Weight (kDa)

9.37

Isoelectric Point (pI)

42.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016711)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G43260
malus_domestica MD05G1114700.v1.1 MD13G1119200.v1.1 MD16G1119600.v1.1
prunus_persica Prupe.1G225600_v2.0.a1
pyrus_communis pycom13g10400 pycom16g10230
rosa_chinensis RchiOBHm_Chr4g0430231
rosa_multiflora Rmu_co8297869.1_g000001 Rmu_sc0030011.1_g000002
rosa_roxburghii Rroxscaffold_5G00372020
rosa_rugosa Rorug04G0241700
rosa_samantha Rh4BG304700
rosa_wichuraiana Rw4G025860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 155
Acc36I ACCTGC 1 cut(s) 155
AccB1I GGYRCC 1 cut(s) 183
AccII CGCG 3 cut(s) 59, 112, 160
AciI CCGC 4 cut(s) 53, 59, 110, 251
AcoI YGGCCR 2 cut(s) 96, 248
AcyI GRCGYC 1 cut(s) 45
AfaI GTAC 3 cut(s) 211, 241, 273
AfiI CCNNNNNNNGG 1 cut(s) 98
AgeI ACCGGT 1 cut(s) 35
AjnI CCWGG 1 cut(s) 119
AluBI AGCT 3 cut(s) 28, 192, 225
AluI AGCT 3 cut(s) 28, 192, 225
Alw26I GTCTC 1 cut(s) 44
Ama87I CYCGRG 1 cut(s) 202
AoxI GGCC 3 cut(s) 96, 100, 248
ApeKI GCWGC 1 cut(s) 222
AsiGI ACCGGT 1 cut(s) 35
AspLEI GCGC 4 cut(s) 59, 114, 162, 279
AspS9I GGNCC 4 cut(s) 8, 82, 101, 165
AsuHPI GGTGA 2 cut(s) 136, 185
AvaI CYCGRG 1 cut(s) 202
AvaII GGWCC 3 cut(s) 8, 82, 165
BanI GGYRCC 1 cut(s) 183
BbsI GAAGAC 1 cut(s) 55
BbvI GCAGC 1 cut(s) 234
BccI CCATC 1 cut(s) 164
BciT130I CCWGG 1 cut(s) 121
BcoDI GTCTC 1 cut(s) 44
BfoI RGCGCY 1 cut(s) 280
BfuAI ACCTGC 1 cut(s) 155
BglII AGATCT 1 cut(s) 264
BisI GCNGC 2 cut(s) 223, 251
BlsI GCNGC 2 cut(s) 224, 252
Bme1390I CCNGG 1 cut(s) 121
Bme18I GGWCC 3 cut(s) 8, 82, 165
BmeT110I CYCGRG 1 cut(s) 202
BmgT120I GGNCC 4 cut(s) 8, 82, 101, 165
BmiI GGNNCC 2 cut(s) 103, 185
BmrFI CCNGG 1 cut(s) 121
BpiI GAAGAC 1 cut(s) 55
BsaHI GRCGYC 1 cut(s) 45
BsaI GGTCTC 1 cut(s) 44
BsaJI CCNNGG 2 cut(s) 93, 119
BsaWI WCCGGW 2 cut(s) 35, 256
Bsc4I CCNNNNNNNGG 1 cut(s) 98
Bse118I RCCGGY 3 cut(s) 35, 98, 197
BseBI CCWGG 1 cut(s) 121
BseDI CCNNGG 2 cut(s) 93, 119
BseLI CCNNNNNNNGG 1 cut(s) 98
BseMII CTCAG 1 cut(s) 38
BseX3I CGGCCG 1 cut(s) 248
BseXI GCAGC 1 cut(s) 234
Bsh1236I CGCG 3 cut(s) 59, 112, 160
Bsh1285I CGRYCG 2 cut(s) 15, 251
BshFI GGCC 3 cut(s) 98, 102, 250
BshNI GGYRCC 1 cut(s) 183
BshTI ACCGGT 1 cut(s) 35
BsiEI CGRYCG 2 cut(s) 15, 251
BsiHKCI CYCGRG 1 cut(s) 202
BsiSI CCGG 5 cut(s) 36, 99, 187, 198, 257
BsiWI CGTACG 1 cut(s) 209
BslFI GGGAC 1 cut(s) 102
BslI CCNNNNNNNGG 1 cut(s) 98
BsmAI GTCTC 1 cut(s) 44
BsmFI GGGAC 1 cut(s) 102
BsnI GGCC 3 cut(s) 98, 102, 250
Bso31I GGTCTC 1 cut(s) 44
BsoBI CYCGRG 1 cut(s) 202
Bsp143I GATC 2 cut(s) 12, 264
Bsp19I CCATGG 1 cut(s) 93
BspACI CCGC 4 cut(s) 53, 59, 110, 251
BspANI GGCC 3 cut(s) 98, 102, 250
BspCNI CTCAG 1 cut(s) 37
BspFNI CGCG 3 cut(s) 59, 112, 160
BspLI GGNNCC 2 cut(s) 103, 185
BspMI ACCTGC 1 cut(s) 155
BspT107I GGYRCC 1 cut(s) 183
BspTNI GGTCTC 1 cut(s) 44
BsrFI RCCGGY 3 cut(s) 35, 98, 197
BssAI RCCGGY 3 cut(s) 35, 98, 197
BssECI CCNNGG 2 cut(s) 93, 119
BssMI GATC 2 cut(s) 12, 264
BssNI GRCGYC 1 cut(s) 45
BssT1I CCWWGG 1 cut(s) 93
Bst2UI CCWGG 1 cut(s) 121
BstACI GRCGYC 1 cut(s) 45
BstC8I GCNNGC 5 cut(s) 30, 55, 100, 158, 199
BstDEI CTNAG 2 cut(s) 24, 294
BstDSI CCRYGG 1 cut(s) 93
BstEII GGTNACC 1 cut(s) 142
BstFNI CGCG 3 cut(s) 59, 112, 160
BstH2I RGCGCY 1 cut(s) 280
BstHHI GCGC 4 cut(s) 59, 114, 162, 279
BstKTI GATC 2 cut(s) 15, 267
BstMAI GTCTC 1 cut(s) 44
BstMBI GATC 2 cut(s) 12, 264
BstMCI CGRYCG 2 cut(s) 15, 251
BstMWI GCNNNNNNNGC 2 cut(s) 25, 198
BstNI CCWGG 1 cut(s) 121
BstPI GGTNACC 1 cut(s) 142
BstSCI CCNGG 1 cut(s) 119
BstUI CGCG 3 cut(s) 59, 112, 160
BstV1I GCAGC 1 cut(s) 234
BstV2I GAAGAC 1 cut(s) 55
BstX2I RGATCY 1 cut(s) 264
BstYI RGATCY 1 cut(s) 264
BstZI CGGCCG 1 cut(s) 248
BsuRI GGCC 3 cut(s) 98, 102, 250
BtgI CCRYGG 1 cut(s) 93
BveI ACCTGC 1 cut(s) 155
Cac8I GCNNGC 5 cut(s) 30, 55, 100, 158, 199
CfoI GCGC 4 cut(s) 59, 114, 162, 279
Cfr10I RCCGGY 3 cut(s) 35, 98, 197
Cfr13I GGNCC 4 cut(s) 8, 82, 101, 165
CseI GACGC 1 cut(s) 34
Csp6I GTAC 3 cut(s) 210, 240, 272
CspAI ACCGGT 1 cut(s) 35
CviAII CATG 2 cut(s) 79, 94
CviJI RGCY 8 cut(s) 28, 91, 98, 102, 192, 201, 225, 250
CviKI_1 RGCY 8 cut(s) 28, 91, 98, 102, 192, 201, 225, 250
CviQI GTAC 3 cut(s) 210, 240, 272
DdeI CTNAG 2 cut(s) 24, 294
DpnI GATC 2 cut(s) 14, 266
DpnII GATC 2 cut(s) 12, 264
EaeI YGGCCR 2 cut(s) 96, 248
EagI CGGCCG 1 cut(s) 248
EclXI CGGCCG 1 cut(s) 248
Eco130I CCWWGG 1 cut(s) 93
Eco31I GGTCTC 1 cut(s) 44
Eco47I GGWCC 3 cut(s) 8, 82, 165
Eco52I CGGCCG 1 cut(s) 248
Eco88I CYCGRG 1 cut(s) 202
Eco91I GGTNACC 1 cut(s) 142
EcoO65I GGTNACC 1 cut(s) 142
EcoRII CCWGG 1 cut(s) 119
EcoT14I CCWWGG 1 cut(s) 93
ErhI CCWWGG 1 cut(s) 93
FaeI CATG 2 cut(s) 82, 97
FaiI YATR 2 cut(s) 80, 95
FaqI GGGAC 1 cut(s) 102
FatI CATG 2 cut(s) 78, 93
FauI CCCGC 2 cut(s) 46, 117
Fnu4HI GCNGC 2 cut(s) 223, 251
FseI GGCCGGCC 1 cut(s) 102
Fsp4HI GCNGC 2 cut(s) 223, 251
GlaI GCGC 4 cut(s) 58, 113, 161, 278
GluI GCNGC 2 cut(s) 223, 251
HaeII RGCGCY 1 cut(s) 280
HaeIII GGCC 3 cut(s) 98, 102, 250
HapII CCGG 5 cut(s) 36, 99, 187, 198, 257
HgaI GACGC 1 cut(s) 34
HhaI GCGC 4 cut(s) 59, 114, 162, 279
Hin1I GRCGYC 1 cut(s) 45
Hin1II CATG 2 cut(s) 82, 97
Hin6I GCGC 4 cut(s) 57, 112, 160, 277
HinP1I GCGC 4 cut(s) 57, 112, 160, 277
HinfI GANTC 2 cut(s) 22, 244
HpaII CCGG 5 cut(s) 36, 99, 187, 198, 257
HphI GGTGA 2 cut(s) 136, 185
Hpy188I TCNGA 3 cut(s) 12, 169, 264
HpyAV CCTTC 1 cut(s) 115
HpyCH4IV ACGT 1 cut(s) 212
HpyCH4V TGCA 1 cut(s) 126
HpyF10VI GCNNNNNNNGC 2 cut(s) 25, 198
HpyF3I CTNAG 2 cut(s) 24, 294
HpySE526I ACGT 1 cut(s) 212
Hsp92I GRCGYC 1 cut(s) 45
Hsp92II CATG 2 cut(s) 82, 97
HspAI GCGC 4 cut(s) 57, 112, 160, 277
KroI GCCGGC 2 cut(s) 98, 197
KroNI GCCGGC 2 cut(s) 100, 199
Kzo9I GATC 2 cut(s) 12, 264
LmnI GCTCC 1 cut(s) 189
Lsp1109I GCAGC 1 cut(s) 234
MaeII ACGT 1 cut(s) 212
MaeIII GTNAC 1 cut(s) 142
MalI GATC 2 cut(s) 14, 266
MboI GATC 2 cut(s) 12, 264
MboII GAAGA 1 cut(s) 55
MflI RGATCY 1 cut(s) 264
MlyI GAGTC 2 cut(s) 16, 253
MnlI CCTC 1 cut(s) 297
MroNI GCCGGC 2 cut(s) 98, 197
MspA1I CMGCKG 1 cut(s) 225
MspI CCGG 5 cut(s) 36, 99, 187, 198, 257
MspR9I CCNGG 1 cut(s) 121
MvaI CCWGG 1 cut(s) 121
MvnI CGCG 3 cut(s) 59, 112, 160
MwoI GCNNNNNNNGC 2 cut(s) 25, 198
NaeI GCCGGC 2 cut(s) 100, 199
NcoI CCATGG 1 cut(s) 93
NdeII GATC 2 cut(s) 12, 264
NgoMIV GCCGGC 2 cut(s) 98, 197
NlaIII CATG 2 cut(s) 82, 97
NlaIV GGNNCC 2 cut(s) 103, 185
NmeAIII GCCGAG 1 cut(s) 21
NmuCI GTSAC 1 cut(s) 142
PaqCI CACCTGC 1 cut(s) 155
PcsI WCGNNNNNNNCGW 1 cut(s) 209
PdiI GCCGGC 2 cut(s) 100, 199
Pfl23II CGTACG 1 cut(s) 209
PinAI ACCGGT 1 cut(s) 35
PkrI GCNGC 2 cut(s) 224, 252
Ple19I CGATCG 1 cut(s) 15
PleI GAGTC 2 cut(s) 16, 252
PpsI GAGTC 2 cut(s) 16, 252
Psp6I CCWGG 1 cut(s) 119
PspEI GGTNACC 1 cut(s) 142
PspGI CCWGG 1 cut(s) 119
PspLI CGTACG 1 cut(s) 209
PspN4I GGNNCC 2 cut(s) 103, 185
PspPI GGNCC 4 cut(s) 8, 82, 101, 165
PsuI RGATCY 1 cut(s) 264
PvuI CGATCG 1 cut(s) 15
PvuII CAGCTG 1 cut(s) 225
RigI GGCCGGCC 1 cut(s) 102
RsaI GTAC 3 cut(s) 211, 241, 273
RsaNI GTAC 3 cut(s) 210, 240, 272
SatI GCNGC 2 cut(s) 223, 251
Sau3AI GATC 2 cut(s) 12, 264
Sau96I GGNCC 4 cut(s) 8, 82, 101, 165
SchI GAGTC 2 cut(s) 16, 253
ScrFI CCNGG 1 cut(s) 121
SetI ASST 7 cut(s) 10, 30, 125, 149, 194, 215, 227
SinI GGWCC 3 cut(s) 8, 82, 165
SsiI CCGC 4 cut(s) 53, 59, 110, 251
StyD4I CCNGG 1 cut(s) 119
StyI CCWWGG 1 cut(s) 93
TaiI ACGT 1 cut(s) 215
TaqII GACCGA 1 cut(s) 64
TauI GCSGC 1 cut(s) 253
TseFI GTSAC 1 cut(s) 142
TseI GCWGC 1 cut(s) 222
Tsp45I GTSAC 1 cut(s) 142
TspGWI ACGGA 3 cut(s) 144, 259, 279
VpaK11BI GGWCC 3 cut(s) 8, 82, 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.